Information for 20-ATTAAGCTTC (Motif 20)


Reverse Opposite:

p-value:1e-6
log p-value:-1.497e+01
Information Content per bp:1.650
Number of Target Sequences with motif88.0
Percentage of Target Sequences with motif14.01%
Number of Background Sequences with motif3401.0
Percentage of Background Sequences with motif8.04%
Average Position of motif in Targets380.7 +/- 299.3bp
Average Position of motif in Background390.6 +/- 264.2bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.08
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0164.1_Nr2e3/Jaspar

Match Rank:1
Score:0.78
Offset:2
Orientation:forward strand
Alignment:ATTAAGCTTC
--CAAGCTT-

POL008.1_DCE_S_I/Jaspar

Match Rank:2
Score:0.66
Offset:5
Orientation:forward strand
Alignment:ATTAAGCTTC-
-----GCTTCC

MA0151.1_ARID3A/Jaspar

Match Rank:3
Score:0.62
Offset:0
Orientation:forward strand
Alignment:ATTAAGCTTC
ATTAAA----

MA0467.1_Crx/Jaspar

Match Rank:4
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:ATTAAGCTTC--
-CTAATCCTCTT

PH0130.1_Otx2/Jaspar

Match Rank:5
Score:0.59
Offset:-7
Orientation:forward strand
Alignment:-------ATTAAGCTTC
TGTAGGGATTAATTGTC

Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer

Match Rank:6
Score:0.59
Offset:-2
Orientation:reverse strand
Alignment:--ATTAAGCTTC
YCATTAMC----

PH0120.1_Nkx6-3/Jaspar

Match Rank:7
Score:0.58
Offset:-7
Orientation:reverse strand
Alignment:-------ATTAAGCTTC
CNNANTAATTAATTNNC

PH0138.1_Pitx2/Jaspar

Match Rank:8
Score:0.58
Offset:-4
Orientation:reverse strand
Alignment:----ATTAAGCTTC---
GNNNATTAATCCCTNCN

MA0063.1_Nkx2-5/Jaspar

Match Rank:9
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--ATTAAGCTTC
CAATTAA-----

PH0129.1_Otx1/Jaspar

Match Rank:10
Score:0.57
Offset:-4
Orientation:reverse strand
Alignment:----ATTAAGCTTC---
NNNAATTAATCCCCNCN