Information for 4-GATGCTTT (Motif 21)


Reverse Opposite:

p-value:1e-6
log p-value:-1.435e+01
Information Content per bp:1.528
Number of Target Sequences with motif240.0
Percentage of Target Sequences with motif38.22%
Number of Background Sequences with motif12310.4
Percentage of Background Sequences with motif29.11%
Average Position of motif in Targets405.0 +/- 334.2bp
Average Position of motif in Background391.3 +/- 358.1bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.30
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0164.1_Nr2e3/Jaspar

Match Rank:1
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:GATGCTTT
-AAGCTTG

POL008.1_DCE_S_I/Jaspar

Match Rank:2
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-GATGCTTT
NGAAGC---

Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer

Match Rank:3
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--GATGCTTT
MTGATGCAAT

Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer

Match Rank:4
Score:0.56
Offset:-12
Orientation:forward strand
Alignment:------------GATGCTTT
ACTYKNATTCGTGNTACTTC

Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer

Match Rank:5
Score:0.54
Offset:-2
Orientation:reverse strand
Alignment:--GATGCTTT
ATGATGCAAT

PH0037.1_Hdx/Jaspar

Match Rank:6
Score:0.53
Offset:-3
Orientation:reverse strand
Alignment:---GATGCTTT------
TNNNATGATTTCNNCNN

PB0125.1_Gata3_2/Jaspar

Match Rank:7
Score:0.53
Offset:-7
Orientation:forward strand
Alignment:-------GATGCTTT-------
TTTTGTAGATTTTATCGACTTA

PB0203.1_Zfp691_2/Jaspar

Match Rank:8
Score:0.53
Offset:-7
Orientation:reverse strand
Alignment:-------GATGCTTT--
NTNNNAGGAGTCTCNTN

PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer

Match Rank:9
Score:0.52
Offset:-1
Orientation:reverse strand
Alignment:-GATGCTTT------
AGATGCTRCTRCCHT

PH0125.1_Obox5_2/Jaspar

Match Rank:10
Score:0.52
Offset:-6
Orientation:reverse strand
Alignment:------GATGCTTT---
NANAGGGATTAATTATN