Information for 3-CGCGCGGCGCGC (Motif 3)


Reverse Opposite:

p-value:1e-10
log p-value:-2.309e+01
Information Content per bp:1.691
Number of Target Sequences with motif246.0
Percentage of Target Sequences with motif39.17%
Number of Background Sequences with motif11567.7
Percentage of Background Sequences with motif27.35%
Average Position of motif in Targets556.5 +/- 333.9bp
Average Position of motif in Background396.7 +/- 493.9bp
Strand Bias (log2 ratio + to - strand density)-0.0
Multiplicity (# of sites on avg that occur together)1.87
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0199.1_Zfp161_2/Jaspar

Match Rank:1
Score:0.71
Offset:-2
Orientation:forward strand
Alignment:--CGCGCGGCGCGC
GCCGCGCAGTGCGT

POL006.1_BREu/Jaspar

Match Rank:2
Score:0.67
Offset:5
Orientation:reverse strand
Alignment:CGCGCGGCGCGC-
-----GGCGCGCT

PB0008.1_E2F2_1/Jaspar

Match Rank:3
Score:0.63
Offset:3
Orientation:reverse strand
Alignment:CGCGCGGCGCGC------
---NTCGCGCGCCTTNNN

PB0009.1_E2F3_1/Jaspar

Match Rank:4
Score:0.61
Offset:3
Orientation:reverse strand
Alignment:CGCGCGGCGCGC------
---ANCGCGCGCCCTTNN

PB0095.1_Zfp161_1/Jaspar

Match Rank:5
Score:0.60
Offset:2
Orientation:forward strand
Alignment:CGCGCGGCGCGC------
--TGGCGCGCGCGCCTGA

Sp1(Zf)/Promoter/Homer

Match Rank:6
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-CGCGCGGCGCGC
GGGGGCGGGGCC-

PB0052.1_Plagl1_1/Jaspar

Match Rank:7
Score:0.54
Offset:0
Orientation:reverse strand
Alignment:CGCGCGGCGCGC----
NNNGGGGCGCCCCCNN

POL013.1_MED-1/Jaspar

Match Rank:8
Score:0.53
Offset:4
Orientation:reverse strand
Alignment:CGCGCGGCGCGC
----CGGAGC--

PB0147.1_Max_2/Jaspar

Match Rank:9
Score:0.52
Offset:-4
Orientation:reverse strand
Alignment:----CGCGCGGCGCGC
NNGTCGCGTGNCAC--

POL001.1_MTE/Jaspar

Match Rank:10
Score:0.51
Offset:-3
Orientation:forward strand
Alignment:---CGCGCGGCGCGC----
TTTCGAGCGGAACGGTCGC