Information for 2-AAGATAATTG (Motif 4)


Reverse Opposite:

p-value:1e-9
log p-value:-2.100e+01
Information Content per bp:1.842
Number of Target Sequences with motif26.0
Percentage of Target Sequences with motif4.14%
Number of Background Sequences with motif399.5
Percentage of Background Sequences with motif0.94%
Average Position of motif in Targets315.2 +/- 183.4bp
Average Position of motif in Background390.6 +/- 246.5bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0063.1_Nkx2-5/Jaspar

Match Rank:1
Score:0.73
Offset:3
Orientation:forward strand
Alignment:AAGATAATTG
---TTAATTG

MA0125.1_Nobox/Jaspar

Match Rank:2
Score:0.73
Offset:4
Orientation:forward strand
Alignment:AAGATAATTG--
----TAATTGGT

MA0075.1_Prrx2/Jaspar

Match Rank:3
Score:0.70
Offset:4
Orientation:reverse strand
Alignment:AAGATAATTG
----TAATT-

PH0007.1_Barx1/Jaspar

Match Rank:4
Score:0.69
Offset:0
Orientation:forward strand
Alignment:AAGATAATTG------
AAAGTAATTAGTGAAT

PH0022.1_Dlx3/Jaspar

Match Rank:5
Score:0.69
Offset:-2
Orientation:forward strand
Alignment:--AAGATAATTG-----
TCGCGATAATTACCGAC

PH0021.1_Dlx2/Jaspar

Match Rank:6
Score:0.68
Offset:0
Orientation:forward strand
Alignment:AAGATAATTG------
GGAATAATTACCTCAG

Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer

Match Rank:7
Score:0.68
Offset:2
Orientation:forward strand
Alignment:AAGATAATTG
--GKTAATGR

PH0009.1_Bsx/Jaspar

Match Rank:8
Score:0.67
Offset:0
Orientation:forward strand
Alignment:AAGATAATTG------
CAGGTAATTACCTCAG

MF0010.1_Homeobox_class/Jaspar

Match Rank:9
Score:0.66
Offset:2
Orientation:forward strand
Alignment:AAGATAATTG
--AATAATT-

Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer

Match Rank:10
Score:0.66
Offset:3
Orientation:forward strand
Alignment:AAGATAATTG-
---CTAATKGV