Information for 3-TGCTTTTAAA (Motif 5)


Reverse Opposite:

p-value:1e-8
log p-value:-2.061e+01
Information Content per bp:1.824
Number of Target Sequences with motif43.0
Percentage of Target Sequences with motif6.85%
Number of Background Sequences with motif1000.6
Percentage of Background Sequences with motif2.37%
Average Position of motif in Targets417.6 +/- 360.1bp
Average Position of motif in Background385.2 +/- 271.1bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.02
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

TATA-Box(TBP)/Promoter/Homer

Match Rank:1
Score:0.75
Offset:1
Orientation:forward strand
Alignment:TGCTTTTAAA---
-CCTTTTATAGNC

CHR(?)/Hela-CellCycle-Expression/Homer

Match Rank:2
Score:0.66
Offset:3
Orientation:reverse strand
Alignment:TGCTTTTAAA---
---TTTGAAACCG

Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer

Match Rank:3
Score:0.64
Offset:0
Orientation:forward strand
Alignment:TGCTTTTAAA
NGCAATTAAA

POL012.1_TATA-Box/Jaspar

Match Rank:4
Score:0.63
Offset:-4
Orientation:reverse strand
Alignment:----TGCTTTTAAA-
NNNNNNCTTTTATAN

MA0108.2_TBP/Jaspar

Match Rank:5
Score:0.63
Offset:-4
Orientation:reverse strand
Alignment:----TGCTTTTAAA-
NNNNNNCTTTTATAN

Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer

Match Rank:6
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:TGCTTTTAAA-
-CCTTTGATGT

PH0157.1_Rhox11_1/Jaspar

Match Rank:7
Score:0.62
Offset:-4
Orientation:forward strand
Alignment:----TGCTTTTAAA---
AAGACGCTGTAAAGCGA

PH0068.1_Hoxc13/Jaspar

Match Rank:8
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--TGCTTTTAAA----
AAAGCTCGTAAAATTT

PH0158.1_Rhox11_2/Jaspar

Match Rank:9
Score:0.60
Offset:-4
Orientation:forward strand
Alignment:----TGCTTTTAAA---
AGGACGCTGTAAAGGGA

PH0048.1_Hoxa13/Jaspar

Match Rank:10
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--TGCTTTTAAA----
AAACCTCGTAAAATTT