Information for 5-WCTGTBACTA (Motif 9)


Reverse Opposite:

p-value:1e-8
log p-value:-2.019e+01
Information Content per bp:1.858
Number of Target Sequences with motif29.0
Percentage of Target Sequences with motif4.62%
Number of Background Sequences with motif510.7
Percentage of Background Sequences with motif1.21%
Average Position of motif in Targets358.8 +/- 255.6bp
Average Position of motif in Background403.2 +/- 254.3bp
Strand Bias (log2 ratio + to - strand density)0.5
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0498.1_Meis1/Jaspar

Match Rank:1
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-WCTGTBACTA----
AGCTGTCACTCACCT

Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer

Match Rank:2
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-WCTGTBACTA
VGCTGWCAVB-

Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer

Match Rank:3
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:WCTGTBACTA---
-CTGTTGCTAGGS

PH0141.1_Pknox2/Jaspar

Match Rank:4
Score:0.62
Offset:-5
Orientation:forward strand
Alignment:-----WCTGTBACTA-
AAGCACCTGTCAATAT

PH0169.1_Tgif1/Jaspar

Match Rank:5
Score:0.62
Offset:-5
Orientation:reverse strand
Alignment:-----WCTGTBACTA--
NNNCAGCTGTCAATATN

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:6
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--WCTGTBACTA
TGTCTGDCACCT

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:7
Score:0.62
Offset:0
Orientation:forward strand
Alignment:WCTGTBACTA--
NCTGTCAATCAN

PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer

Match Rank:8
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-WCTGTBACTA-
GSCTGTCACTCA

POL009.1_DCE_S_II/Jaspar

Match Rank:9
Score:0.61
Offset:0
Orientation:forward strand
Alignment:WCTGTBACTA
GCTGTG----

MA0100.2_Myb/Jaspar

Match Rank:10
Score:0.61
Offset:-3
Orientation:forward strand
Alignment:---WCTGTBACTA
CCAACTGCCA---