Motif Name	Consensus	P-value	Log P-value	q-value (Benjamini)	# of Target Sequences with Motif(of 628)	% of Target Sequences with Motif	# of Background Sequences with Motif(of 42236)	% of Background Sequences with Motif
RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer	CGGTTGCCATGGCAAC	1e-5	-1.300e+01	0.0006	45.0	7.17%	1414.9	3.35%
Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	KGTTGCCATGGCAA	1e-5	-1.201e+01	0.0008	72.0	11.46%	2812.2	6.65%
Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer	GTTGCCATGGCAACM	1e-4	-1.148e+01	0.0009	45.0	7.17%	1503.9	3.56%
X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	GGTTGCCATGGCAA	1e-3	-8.103e+00	0.0200	37.0	5.89%	1340.1	3.17%
OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAACAATG	1e-2	-6.441e+00	0.0842	35.0	5.57%	1368.9	3.24%
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1e-2	-6.352e+00	0.0842	59.0	9.39%	2671.4	6.32%
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer	BCCATTGTTC	1e-2	-6.310e+00	0.0842	164.0	26.11%	8960.8	21.19%
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1e-2	-5.789e+00	0.1010	69.0	10.99%	3312.8	7.83%
Brachyury(T-box)/Mesoendoderm-Brachyury-ChIP-exo(GSE54963)/Homer	ANTTMRCASBNNNGTGYKAAN	1e-2	-4.792e+00	0.2434	52.0	8.28%	2476.0	5.85%
Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAW	1e-2	-4.782e+00	0.2434	70.0	11.15%	3523.7	8.33%
Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer	TGCGTGGGYG	1e-2	-4.749e+00	0.2434	305.0	48.57%	18509.2	43.76%
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1e-1	-4.559e+00	0.2434	8.0	1.27%	198.4	0.47%
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer	GKTAATGR	1e-1	-4.437e+00	0.2434	269.0	42.83%	16216.4	38.34%
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer	CYAAAAATAG	1e-1	-4.230e+00	0.2745	62.0	9.87%	3143.0	7.43%
Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer	NGCGTGGGCGGR	1e-1	-4.227e+00	0.2745	122.0	19.43%	6803.3	16.09%
Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer	YCTTTGTTCC	1e-1	-4.176e+00	0.2745	153.0	24.36%	8769.9	20.74%
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	1e-1	-4.166e+00	0.2745	258.0	41.08%	15576.8	36.83%
Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer	NBWGATAAGR	1e-1	-4.003e+00	0.2745	137.0	21.82%	7801.2	18.45%
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer	CTAATKGV	1e-1	-3.829e+00	0.3018	255.0	40.61%	15489.7	36.62%
Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer	CCWTTGTYYB	1e-1	-3.698e+00	0.3272	253.0	40.29%	15402.3	36.42%
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	1e-1	-3.592e+00	0.3464	230.0	36.62%	13925.4	32.93%
STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer	RTTTCTNAGAAA	1e-1	-3.424e+00	0.3909	55.0	8.76%	2866.8	6.78%
CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski et al.)/Homer	AYAGTGCCMYCTRGTGGCCA	1e-1	-3.388e+00	0.3909	53.0	8.44%	2753.8	6.51%
PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GTCACGCTCSCTGM	1e-1	-3.341e+00	0.3909	37.0	5.89%	1818.4	4.30%
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	1e-1	-3.289e+00	0.3939	196.0	31.21%	11806.4	27.92%
HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer	GCACGTACCC	1e-1	-3.067e+00	0.4727	112.0	17.83%	6475.4	15.31%
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	1e-1	-2.950e+00	0.5116	268.0	42.68%	16673.8	39.42%
Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer	ATATGCAAAT	1e-1	-2.935e+00	0.5116	43.0	6.85%	2237.1	5.29%
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer	TAATTAGN	1e-1	-2.841e+00	0.5312	129.0	20.54%	7626.2	18.03%
Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer	SSCMATWAAA	1e-1	-2.811e+00	0.5312	90.0	14.33%	5158.5	12.20%
PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1e-1	-2.789e+00	0.5312	92.0	14.65%	5290.4	12.51%
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer	YCATYAATCA	1e-1	-2.512e+00	0.6692	116.0	18.47%	6900.8	16.32%
E2F(E2F)/Hela-CellCycle-Expression/Homer	TTSGCGCGAAAA	1e-1	-2.436e+00	0.6998	32.0	5.10%	1668.1	3.94%
MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1e-1	-2.420e+00	0.6998	231.0	36.78%	14442.9	34.15%
BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer	CNNBRGCGCCCCCTGSTGGC	1e0	-2.285e+00	0.7675	112.0	17.83%	6720.0	15.89%
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson et al.)/Homer	GYCATCMATCAT	1e0	-2.265e+00	0.7675	19.0	3.03%	929.0	2.20%
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1e0	-2.021e+00	0.9459	152.0	24.20%	9419.5	22.27%
NRF(NRF)/Promoter/Homer	STGCGCATGCGC	1e0	-1.936e+00	1.0000	105.0	16.72%	6395.0	15.12%
NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber et al.)/Homer	GGGGGAATCCCC	1e0	-1.848e+00	1.0000	44.0	7.01%	2528.6	5.98%
Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer	SAGATAAGRV	1e0	-1.836e+00	1.0000	77.0	12.26%	4627.1	10.94%
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1e0	-1.786e+00	1.0000	23.0	3.66%	1242.7	2.94%
Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer	ATTAACACCT	1e0	-1.748e+00	1.0000	269.0	42.83%	17304.4	40.91%
Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer	BBCTTATCTS	1e0	-1.731e+00	1.0000	84.0	13.38%	5115.0	12.09%
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer	YTGCCAAG	1e0	-1.702e+00	1.0000	296.0	47.13%	19139.3	45.25%
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1e0	-1.625e+00	1.0000	27.0	4.30%	1521.0	3.60%
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer	VNRVCAGCTGGY	1e0	-1.608e+00	1.0000	217.0	34.55%	13915.7	32.90%
Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer	VGCTGWCAVB	1e0	-1.604e+00	1.0000	281.0	44.75%	18191.8	43.01%
CHR(?)/Hela-CellCycle-Expression/Homer	SRGTTTCAAA	1e0	-1.598e+00	1.0000	81.0	12.90%	4971.2	11.75%
GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATAASR	1e0	-1.573e+00	1.0000	173.0	27.55%	11015.2	26.04%
EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer	DGTCCCYRGGGA	1e0	-1.536e+00	1.0000	61.0	9.71%	3702.1	8.75%
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer	ADBTAATTAR	1e0	-1.529e+00	1.0000	178.0	28.34%	11370.8	26.89%
STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer	ABTTCYYRRGAA	1e0	-1.517e+00	1.0000	72.0	11.46%	4420.0	10.45%
NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer	CTGCGCATGCGC	1e0	-1.492e+00	1.0000	108.0	17.20%	6775.4	16.02%
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1e0	-1.489e+00	1.0000	29.0	4.62%	1676.7	3.96%
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	1e0	-1.445e+00	1.0000	102.0	16.24%	6404.4	15.14%
E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer	CWGGCGGGAA	1e0	-1.387e+00	1.0000	147.0	23.41%	9396.3	22.22%
NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer	CYTGGCABNSTGCCAR	1e0	-1.386e+00	1.0000	90.0	14.33%	5646.0	13.35%
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1e0	-1.348e+00	1.0000	74.0	11.78%	4616.6	10.92%
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer	MAATCACTGC	1e0	-1.347e+00	1.0000	94.0	14.97%	5925.7	14.01%
STAT6(Stat)/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer	TTCCKNAGAA	1e0	-1.333e+00	1.0000	73.0	11.62%	4557.5	10.78%
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1e0	-1.326e+00	1.0000	249.0	39.65%	16223.1	38.36%
c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer	VCCACGTG	1e0	-1.317e+00	1.0000	155.0	24.68%	9965.3	23.56%
MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	RRCAGCTGYTSY	1e0	-1.305e+00	1.0000	197.0	31.37%	12764.9	30.18%
HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer	NCYAATAAAA	1e0	-1.278e+00	1.0000	126.0	20.06%	8067.0	19.07%
Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer	VCAGCTGYTG	1e0	-1.172e+00	1.0000	214.0	34.08%	13987.2	33.07%
TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer	CCWGGAATGY	1e0	-1.147e+00	1.0000	74.0	11.78%	4705.9	11.13%
Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer	AGGTGTGAAM	1e0	-1.128e+00	1.0000	138.0	21.97%	8950.2	21.16%
Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer	AGGTGTCA	1e0	-1.125e+00	1.0000	438.0	69.75%	29105.5	68.82%
ETS:RUNX(ETS,Runt)/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer	RCAGGATGTGGT	1e0	-1.125e+00	1.0000	22.0	3.50%	1323.8	3.13%
Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer	ASWTCAAAGG	1e0	-1.123e+00	1.0000	36.0	5.73%	2228.8	5.27%
AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer	SCCTSAGGSCAW	1e0	-1.114e+00	1.0000	336.0	53.50%	22219.1	52.54%
AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer	ATGCCCTGAGGC	1e0	-1.104e+00	1.0000	278.0	44.27%	18325.8	43.33%
GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer	CGTGGGTGGTCC	1e0	-1.091e+00	1.0000	31.0	4.94%	1915.0	4.53%
Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1e0	-1.046e+00	1.0000	234.0	37.26%	15418.1	36.46%
Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer	AGGTGHCAGACA	1e0	-1.042e+00	1.0000	32.0	5.10%	1995.0	4.72%
Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	DATGASTCATHN	1e0	-9.998e-01	1.0000	80.0	12.74%	5175.9	12.24%
Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo et al.)/Homer	TBGCACGCAA	1e0	-9.930e-01	1.0000	183.0	29.14%	12043.5	28.48%
GATA(Zf),IR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NAGATWNBNATCTNN	1e0	-9.913e-01	1.0000	10.0	1.59%	585.4	1.38%
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer	CCWGGAATGY	1e0	-9.823e-01	1.0000	126.0	20.06%	8244.2	19.49%
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	ATGACGTCATCY	1e0	-9.695e-01	1.0000	49.0	7.80%	3139.6	7.42%
ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer	AGGAARCAGCTG	1e0	-9.570e-01	1.0000	16.0	2.55%	979.2	2.32%
EBNA1(EBV virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	1e0	-9.435e-01	1.0000	4.0	0.64%	213.5	0.50%
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer	NATTTCCNGGAAAT	1e0	-9.416e-01	1.0000	40.0	6.37%	2557.4	6.05%
p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer	NNDRCATGYCYNRRCATGYH	1e0	-9.294e-01	1.0000	67.0	10.67%	4350.7	10.29%
BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	DATGASTCAT	1e0	-8.863e-01	1.0000	79.0	12.58%	5172.1	12.23%
Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer	RRSCACTYAA	1e0	-8.605e-01	1.0000	333.0	53.03%	22228.8	52.56%
Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer	CCATTGTATGCAAAT	1e0	-8.510e-01	1.0000	16.0	2.55%	1007.5	2.38%
Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer	NNATGASTCATH	1e0	-8.427e-01	1.0000	67.0	10.67%	4397.3	10.40%
E-box(bHLH)/Promoter/Homer	SSGGTCACGTGA	1e0	-8.369e-01	1.0000	26.0	4.14%	1672.3	3.95%
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer	SCTGTCAMTCAN	1e0	-8.306e-01	1.0000	45.0	7.17%	2937.1	6.94%
Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	CACAGCAGGGGG	1e0	-8.292e-01	1.0000	123.0	19.59%	8150.5	19.27%
TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer	ACWTCAAAGG	1e0	-8.233e-01	1.0000	12.0	1.91%	751.4	1.78%
Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGCATAATTCA	1e0	-7.883e-01	1.0000	38.0	6.05%	2490.9	5.89%
NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WNTGTTTRYTTTGGCA	1e0	-7.874e-01	1.0000	6.0	0.96%	364.4	0.86%
HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer	BSTTCTRGAABVTTCYAGAA	1e0	-7.721e-01	1.0000	30.0	4.78%	1963.9	4.64%
GATA:SCL(Zf,bHLH)/Ter119-SCL-ChIP-Seq(GSE18720)/Homer	CRGCTGBNGNSNNSAGATAA	1e0	-7.635e-01	1.0000	17.0	2.71%	1099.9	2.60%
HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer	TTCTAGAABNTTCTA	1e0	-7.409e-01	1.0000	34.0	5.41%	2244.9	5.31%
TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer	YCWGGAATGY	1e0	-7.337e-01	1.0000	77.0	12.26%	5133.8	12.14%
Atf2(bZIP)/3T3L1-Atf2-ChIP-Seq(GSE56872)/Homer	NRRTGACGTCAT	1e0	-7.321e-01	1.0000	56.0	8.92%	3724.9	8.81%
PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GCAGCCAAGCRTGACH	1e0	-7.303e-01	1.0000	103.0	16.40%	6882.2	16.27%
HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer	TACGTGCV	1e0	-6.970e-01	1.0000	71.0	11.31%	4754.8	11.24%
Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer	NNVVCAGCTGBN	1e0	-6.825e-01	1.0000	307.0	48.89%	20653.3	48.83%
Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer	KTGACCTTGA	1e0	-6.703e-01	1.0000	112.0	17.83%	7535.2	17.82%
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1e0	-6.687e-01	1.0000	301.0	47.93%	20264.1	47.91%
Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer	SVYTTCCNGGAARB	1e0	-6.664e-01	1.0000	114.0	18.15%	7673.2	18.14%
Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer	ASATCAAAGGVA	1e0	-6.547e-01	1.0000	59.0	9.39%	3973.9	9.40%
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	CTGGCAGSCTGCCA	1e0	-6.271e-01	1.0000	79.0	12.58%	5343.3	12.63%
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1e0	-6.201e-01	1.0000	87.0	13.85%	5889.3	13.92%
p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer	RRCATGYCYRGRCATGYYYN	1e0	-5.956e-01	1.0000	14.0	2.23%	952.4	2.25%
p53(p53)/Saos-p53-ChIP-Seq/Homer	RRCATGYCYRGRCATGYYYN	1e0	-5.956e-01	1.0000	14.0	2.23%	952.4	2.25%
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer	ASWTCCTGBT	1e0	-5.920e-01	1.0000	194.0	30.89%	13140.8	31.07%
ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer	VAGGTCACNSTGACC	1e0	-5.818e-01	1.0000	49.0	7.80%	3343.8	7.91%
PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer	ACCRTGACTAATTNN	1e0	-5.769e-01	1.0000	23.0	3.66%	1575.6	3.73%
HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer	RTACGTGC	1e0	-5.698e-01	1.0000	264.0	42.04%	17885.4	42.29%
Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer	TAATCCCN	1e0	-5.340e-01	1.0000	426.0	67.83%	28823.9	68.15%
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1e0	-5.286e-01	1.0000	55.0	8.76%	3788.3	8.96%
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	1e0	-5.276e-01	1.0000	79.0	12.58%	5423.7	12.82%
E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer	DNRCAGCTGY	1e0	-5.273e-01	1.0000	295.0	46.97%	20026.3	47.35%
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1e0	-5.239e-01	1.0000	322.0	51.27%	21848.8	51.66%
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1e0	-5.100e-01	1.0000	59.0	9.39%	4075.4	9.64%
HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer	GGCCATAAATCA	1e0	-4.812e-01	1.0000	74.0	11.78%	5123.8	12.11%
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1e0	-4.512e-01	1.0000	210.0	33.44%	14392.9	34.03%
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski et al.)/Homer	GCTGTGGTTW	1e0	-4.415e-01	1.0000	102.0	16.24%	7073.0	16.72%
NFAT:AP1(RHD,bZIP)/Jurkat-NFATC1-ChIP-Seq(Jolma et al.)/Homer	SARTGGAAAAWRTGAGTCAB	1e0	-4.287e-01	1.0000	19.0	3.03%	1372.0	3.24%
Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer	CGGTCACSCCAC	1e0	-4.105e-01	1.0000	24.0	3.82%	1732.6	4.10%
ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer	GGVTCTCGCGAGAAC	1e0	-3.996e-01	1.0000	27.0	4.30%	1949.5	4.61%
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1e0	-3.987e-01	1.0000	81.0	12.90%	5683.2	13.44%
Pax7(Paired,Homeobox),long/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCHGATTAC	1e0	-3.903e-01	1.0000	2.0	0.32%	157.4	0.37%
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	RGCCATTAAC	1e0	-3.767e-01	1.0000	439.0	69.90%	29900.0	70.70%
ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer	AGTTTCASTTTC	1e0	-3.735e-01	1.0000	6.0	0.96%	465.2	1.10%
Pax7(Paired,Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCAATTA	1e0	-3.715e-01	1.0000	9.0	1.43%	686.7	1.62%
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer	WGGGGATTTCCC	1e0	-3.471e-01	1.0000	85.0	13.54%	6017.5	14.23%
STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer	NYTTCCWGGAAR	1e0	-3.464e-01	1.0000	120.0	19.11%	8420.2	19.91%
p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	ACATGCCCGGGCAT	1e0	-3.391e-01	1.0000	3.0	0.48%	248.1	0.59%
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1e0	-3.379e-01	1.0000	327.0	52.07%	22462.5	53.11%
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	1e0	-3.329e-01	1.0000	100.0	15.92%	7068.0	16.71%
HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer	NTATYGATCH	1e0	-3.299e-01	1.0000	60.0	9.55%	4309.5	10.19%
Atf7(bZIP)/3T3L1-Atf7-ChIP-Seq(GSE56872)/Homer	NGRTGACGTCAY	1e0	-3.288e-01	1.0000	73.0	11.62%	5211.2	12.32%
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1e0	-3.254e-01	1.0000	6.0	0.96%	483.4	1.14%
SpiB(ETS)/OCILY3-SPIB-ChIP-Seq(GSE56857)/Homer	AAAGRGGAAGTG	1e0	-3.209e-01	1.0000	37.0	5.89%	2712.7	6.41%
T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer	ACTTTCGTTTCT	1e0	-3.208e-01	1.0000	1.0	0.16%	87.0	0.21%
GATA3(Zf),DR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATGKDGAGATAAG	1e0	-3.204e-01	1.0000	8.0	1.27%	635.6	1.50%
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1e0	-3.105e-01	1.0000	145.0	23.09%	10184.9	24.08%
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan et al.)/Homer	CTGTTTAC	1e0	-3.080e-01	1.0000	247.0	39.33%	17122.0	40.48%
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1e0	-3.058e-01	1.0000	132.0	21.02%	9302.4	21.99%
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1e0	-3.020e-01	1.0000	485.0	77.23%	33072.1	78.20%
ETS(ETS)/Promoter/Homer	AACCGGAAGT	1e0	-2.925e-01	1.0000	93.0	14.81%	6641.7	15.70%
BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer	NHAACBGYYV	1e0	-2.887e-01	1.0000	232.0	36.94%	16144.0	38.17%
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer	CYTGTTTACWYW	1e0	-2.629e-01	1.0000	91.0	14.49%	6547.0	15.48%
EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer	GTCCCCWGGGGA	1e0	-2.607e-01	1.0000	252.0	40.13%	17554.6	41.51%
Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer	GTRGGTCASTGGGTCA	1e0	-2.575e-01	1.0000	24.0	3.82%	1845.9	4.36%
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	1e0	-2.539e-01	1.0000	194.0	30.89%	13631.0	32.23%
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1e0	-2.527e-01	1.0000	294.0	46.82%	20408.1	48.25%
CEBP(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1e0	-2.457e-01	1.0000	66.0	10.51%	4833.1	11.43%
MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer	RTCATGTGAC	1e0	-2.376e-01	1.0000	148.0	23.57%	10520.5	24.88%
Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer	NNNCTTTCCAGGAAA	1e0	-2.334e-01	1.0000	180.0	28.66%	12719.2	30.07%
Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer	NATGASTCABNN	1e0	-2.326e-01	1.0000	36.0	5.73%	2732.7	6.46%
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1e0	-2.248e-01	1.0000	297.0	47.29%	20674.5	48.88%
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1e0	-2.150e-01	1.0000	21.0	3.34%	1667.9	3.94%
AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	TGGCAGTTGG	1e0	-2.084e-01	1.0000	245.0	39.01%	17200.9	40.67%
CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer	GCTAATCC	1e0	-2.012e-01	1.0000	272.0	43.31%	19046.7	45.03%
TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer	GAGGTCAAAGGTCA	1e0	-1.996e-01	1.0000	19.0	3.03%	1535.8	3.63%
SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	AVCAGCTG	1e0	-1.926e-01	1.0000	540.0	85.99%	36859.9	87.15%
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1e0	-1.632e-01	1.0000	274.0	43.63%	19288.9	45.61%
MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer	GCTGASTCAGCA	1e0	-1.601e-01	1.0000	30.0	4.78%	2393.9	5.66%
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	1e0	-1.495e-01	1.0000	78.0	12.42%	5851.0	13.83%
n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	VRCCACGTGG	1e0	-1.479e-01	1.0000	146.0	23.25%	10597.0	25.06%
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	1e0	-1.456e-01	1.0000	59.0	9.39%	4511.9	10.67%
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1e0	-1.434e-01	1.0000	4.0	0.64%	417.6	0.99%
PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer	RGGTCTCTAACY	1e0	-1.383e-01	1.0000	45.0	7.17%	3521.6	8.33%
IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	GAAAGTGAAAGT	1e0	-1.371e-01	1.0000	14.0	2.23%	1227.4	2.90%
Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGMATATDC	1e0	-1.300e-01	1.0000	98.0	15.61%	7307.3	17.28%
Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer	RTCACSCCAY	1e0	-1.274e-01	1.0000	29.0	4.62%	2372.0	5.61%
RBPJ:Ebox(?,bHLH)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	GGGRAARRGRMCAGMTG	1e0	-1.255e-01	1.0000	54.0	8.60%	4197.4	9.92%
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1e0	-1.237e-01	1.0000	11.0	1.75%	1009.3	2.39%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e0	-1.213e-01	1.0000	11.0	1.75%	1012.4	2.39%
LXRE(NR),DR4/RAW-LXRb.biotin-ChIP-Seq(GSE21512)/Homer	RGGTTACTANAGGTCA	1e0	-1.202e-01	1.0000	5.0	0.80%	522.8	1.24%
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1e0	-1.186e-01	1.0000	402.0	64.01%	28012.4	66.23%
Pax7(Paired,Homeobox),longest/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	NTAATTDGCYAATTANNWWD	1e0	-1.184e-01	1.0000	2.0	0.32%	252.9	0.60%
Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer	ACTYKNATTCGTGNTACTTC	1e0	-1.129e-01	1.0000	5.0	0.80%	529.8	1.25%
Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer	CTTCCGGGAA	1e0	-1.120e-01	1.0000	85.0	13.54%	6443.3	15.23%
IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	ACTGAAACCA	1e0	-1.072e-01	1.0000	49.0	7.80%	3880.1	9.17%
Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer	NNNVCTGWGYAAACASN	1e0	-1.026e-01	1.0000	116.0	18.47%	8656.2	20.47%
Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer	RSCACTYRAG	1e0	-9.656e-02	1.0000	391.0	62.26%	27372.1	64.72%
ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer	AGGCCTRG	1e0	-9.126e-02	1.0000	295.0	46.97%	20979.3	49.60%
Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer	GYMATAAAAH	1e0	-9.117e-02	1.0000	69.0	10.99%	5369.5	12.70%
USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	SGTCACGTGR	1e0	-8.558e-02	1.0000	87.0	13.85%	6674.6	15.78%
Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer	ACAGCTGTTN	1e0	-8.512e-02	1.0000	410.0	65.29%	28681.5	67.82%
E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	NVCACCTGBN	1e0	-8.168e-02	1.0000	269.0	42.83%	19271.4	45.57%
RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer	AGGTCAAGGTCA	1e0	-7.900e-02	1.0000	8.0	1.27%	827.4	1.96%
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer	NRAACCRGTTYRAACCRGYT	1e0	-7.605e-02	1.0000	28.0	4.46%	2408.4	5.69%
FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong et al.)/Homer	AGGTCANTGACCTB	1e0	-7.290e-02	1.0000	74.0	11.78%	5795.3	13.70%
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1e0	-7.184e-02	1.0000	67.0	10.67%	5295.0	12.52%
GATA(Zf),IR3/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NNNNNBAGATAWYATCTVHN	1e0	-7.155e-02	1.0000	10.0	1.59%	1007.6	2.38%
YY1(Zf)/Promoter/Homer	CAAGATGGCGGC	1e0	-6.444e-02	1.0000	24.0	3.82%	2135.6	5.05%
NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	GATGACTCAGCA	1e0	-6.368e-02	1.0000	4.0	0.64%	499.7	1.18%
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1e0	-6.089e-02	1.0000	10.0	1.59%	1029.6	2.43%
Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1e0	-5.995e-02	1.0000	50.0	7.96%	4104.5	9.70%
Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer	GCCACACCCA	1e0	-5.795e-02	1.0000	115.0	18.31%	8787.1	20.78%
Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer	GKVTCADRTTWC	1e0	-5.561e-02	1.0000	23.0	3.66%	2085.5	4.93%
GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer	NRGVACABNVTGTYCY	1e0	-5.446e-02	1.0000	17.0	2.71%	1616.1	3.82%
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	GATGASTCATCN	1e0	-5.400e-02	1.0000	21.0	3.34%	1934.3	4.57%
c-Myc(bHLH)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	VVCCACGTGG	1e0	-5.304e-02	1.0000	93.0	14.81%	7253.5	17.15%
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer	GGCCATAAATCA	1e0	-5.125e-02	1.0000	46.0	7.32%	3846.6	9.09%
bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer	KCACGTGMCN	1e0	-5.122e-02	1.0000	62.0	9.87%	5025.7	11.88%
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	ACAGGAAGTG	1e0	-4.793e-02	1.0000	201.0	32.01%	14848.0	35.11%
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	1e0	-4.539e-02	1.0000	195.0	31.05%	14454.9	34.18%
Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer	NYTAATCCYB	1e0	-4.179e-02	1.0000	87.0	13.85%	6894.8	16.30%
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	1e0	-4.026e-02	1.0000	121.0	19.27%	9331.7	22.06%
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	VACAGGAAAT	1e0	-3.908e-02	1.0000	103.0	16.40%	8061.3	19.06%
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski et al.)/Homer	MACAGGAAGT	1e0	-3.892e-02	1.0000	38.0	6.05%	3307.4	7.82%
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	TGACCTTTNCNT	1e0	-3.859e-02	1.0000	15.0	2.39%	1508.5	3.57%
Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer	BTCAAGGTCA	1e0	-3.714e-02	1.0000	87.0	13.85%	6928.8	16.38%
GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer	RGGATTAR	1e0	-3.365e-02	1.0000	122.0	19.43%	9459.8	22.37%
GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer	VAGRACAKWCTGTYC	1e0	-3.319e-02	1.0000	28.0	4.46%	2570.2	6.08%
CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	NTNATGCAAYMNNHTGMAAY	1e0	-3.312e-02	1.0000	8.0	1.27%	935.0	2.21%
VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer	ARAGGTCANWGAGTTCANNN	1e0	-3.249e-02	1.0000	28.0	4.46%	2574.5	6.09%
Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer	GTCATGCHTGRCTGS	1e0	-3.217e-02	1.0000	63.0	10.03%	5218.3	12.34%
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	AAACCACARM	1e0	-3.114e-02	1.0000	135.0	21.50%	10403.8	24.60%
Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer	BTCAAGGTCA	1e0	-3.096e-02	1.0000	112.0	17.83%	8774.1	20.75%
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	ATTTCCTGTN	1e0	-2.558e-02	1.0000	87.0	13.85%	7032.7	16.63%
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1e0	-2.506e-02	1.0000	395.0	62.90%	28142.1	66.54%
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	1e0	-2.401e-02	1.0000	238.0	37.90%	17638.8	41.71%
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	RACCGGAAGT	1e0	-2.200e-02	1.0000	184.0	29.30%	13947.1	32.98%
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma et al.)/Homer	ATTTTCCATT	1e0	-2.075e-02	1.0000	88.0	14.01%	7161.1	16.93%
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1e0	-1.978e-02	1.0000	2.0	0.32%	393.2	0.93%
Max(bHLH)/K562-Max-ChIP-Seq(GSE31477)/Homer	RCCACGTGGYYN	1e0	-1.859e-02	1.0000	114.0	18.15%	9067.9	21.44%
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	1e0	-1.797e-02	1.0000	163.0	25.96%	12547.8	29.67%
PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer	TGACCTTTGCCCCA	1e0	-1.717e-02	1.0000	149.0	23.73%	11577.0	27.37%
HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer	CARRGKBCAAAGTYCA	1e0	-1.704e-02	1.0000	59.0	9.39%	5072.9	11.99%
Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer	GGTTAAWCATTAA	1e0	-1.499e-02	1.0000	7.0	1.11%	932.7	2.21%
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	MTGATGCAAT	1e0	-1.402e-02	1.0000	19.0	3.03%	1990.5	4.71%
Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer	YTAATYNRATTA	1e0	-1.333e-02	1.0000	26.0	4.14%	2571.8	6.08%
CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	GHCACGTG	1e0	-1.302e-02	1.0000	91.0	14.49%	7501.6	17.74%
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCAT	1e0	-1.285e-02	1.0000	13.0	2.07%	1492.5	3.53%
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	AVCCGGAAGT	1e0	-1.271e-02	1.0000	139.0	22.13%	10959.4	25.91%
NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer	GGAAATTCCC	1e0	-1.205e-02	1.0000	3.0	0.48%	548.3	1.30%
Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer	CVGTSCTCCC	1e0	-1.199e-02	1.0000	385.0	61.31%	27720.5	65.54%
RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	SAAACCACAG	1e0	-1.107e-02	1.0000	95.0	15.13%	7834.9	18.53%
THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1e0	-1.062e-02	1.0000	70.0	11.15%	6002.4	14.19%
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1e0	-7.483e-03	1.0000	101.0	16.08%	8370.1	19.79%
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1e0	-7.058e-03	1.0000	112.0	17.83%	9184.6	21.72%
GFY(?)/Promoter/Homer	ACTACAATTCCC	1e0	-5.837e-03	1.0000	7.0	1.11%	1031.7	2.44%
BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer	GNCACGTG	1e0	-5.640e-03	1.0000	242.0	38.54%	18375.3	43.45%
GATA3(Zf),DR8/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATSTNDNNDSAGATAASN	1e0	-5.484e-03	1.0000	5.0	0.80%	834.8	1.97%
GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer	AAACYKGTTWDACMRGTTTB	1e0	-5.394e-03	1.0000	36.0	5.73%	3526.3	8.34%
Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer	CAAAGGTCAG	1e0	-5.198e-03	1.0000	324.0	51.59%	23937.2	56.60%
ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	ACAGGAAGTG	1e0	-5.195e-03	1.0000	250.0	39.81%	18946.1	44.80%
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1e0	-5.097e-03	1.0000	32.0	5.10%	3214.5	7.60%
FOXA1:AR(Forkhead,NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	AGTAAACAAAAAAGAACAND	1e0	-4.327e-03	1.0000	3.0	0.48%	633.8	1.50%
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer	WAAGTAAACA	1e0	-2.441e-03	1.0000	88.0	14.01%	7671.8	18.14%
EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	AVCAGGAAGT	1e0	-2.116e-03	1.0000	197.0	31.37%	15537.6	36.74%
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1e0	-1.767e-03	1.0000	148.0	23.57%	12121.0	28.66%
CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan et al.)/Homer	CCATATATGGNM	1e0	-1.664e-03	1.0000	25.0	3.98%	2803.7	6.63%
ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	AACCGGAAGT	1e0	-1.544e-03	1.0000	246.0	39.17%	19006.5	44.94%
KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer	DGGGYGKGGC	1e0	-1.496e-03	1.0000	357.0	56.85%	26453.8	62.55%
bZIP:IRF(bZIP,IRF)/Th17-BatF-ChIP-Seq(GSE39756)/Homer	NAGTTTCABTHTGACTNW	1e0	-1.241e-03	1.0000	34.0	5.41%	3600.1	8.51%
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NWGGGTGTGGCY	1e0	-1.078e-03	1.0000	28.0	4.46%	3119.4	7.38%
NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer	KCCACGTGAC	1e0	-7.150e-04	1.0000	159.0	25.32%	13121.2	31.02%
GFY-Staf(?,Zf)/Promoter/Homer	RACTACAATTCCCAGAAKGC	1e0	-1.570e-04	1.0000	5.0	0.80%	1147.0	2.71%
ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer	AGGCCTAG	1e0	-1.520e-04	1.0000	384.0	61.15%	28716.9	67.90%
RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer	TAGGGCAAAGGTCA	1e0	-6.300e-05	1.0000	169.0	26.91%	14357.8	33.95%
NFY(CCAAT)/Promoter/Homer	RGCCAATSRG	1e0	-0.000e+00	1.0000	102.0	16.24%	10561.4	24.97%
CTCF-SatelliteElement(Zf?)/CD4+-CTCF-ChIP-Seq(Barski et al.)/Homer	TGCAGTTCCMVNWRTGGCCA	1e0	0.000e+00	1.0000	0.0	0.00%	193.5	0.46%