Motif Name	Consensus	P-value	Log P-value	q-value (Benjamini)	# of Target Sequences with Motif(of 3907)	% of Target Sequences with Motif	# of Background Sequences with Motif(of 45495)	% of Background Sequences with Motif
Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer	TGCGTGGGYG	1e-145	-3.353e+02	0.0000	1251.0	32.02%	7038.1	15.47%
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1e-118	-2.721e+02	0.0000	1069.0	27.36%	6057.9	13.31%
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer	CYAAAAATAG	1e-106	-2.462e+02	0.0000	970.0	24.83%	5460.4	12.00%
Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer	NNATGASTCATH	1e-75	-1.740e+02	0.0000	1072.0	27.44%	7183.5	15.79%
Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	DATGASTCATHN	1e-73	-1.687e+02	0.0000	1198.0	30.66%	8453.4	18.58%
BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	DATGASTCAT	1e-65	-1.515e+02	0.0000	1188.0	30.41%	8613.2	18.93%
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1e-62	-1.442e+02	0.0000	1264.0	32.35%	9480.2	20.83%
Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer	NATGASTCABNN	1e-61	-1.416e+02	0.0000	696.0	17.81%	4206.7	9.24%
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	GATGASTCATCN	1e-57	-1.325e+02	0.0000	537.0	13.74%	2970.8	6.53%
Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer	VGCTGWCAVB	1e-57	-1.314e+02	0.0000	2300.0	58.87%	20975.0	46.09%
Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer	NGCGTGGGCGGR	1e-49	-1.133e+02	0.0000	300.0	7.68%	1320.7	2.90%
Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer	AGGTGTCA	1e-24	-5.646e+01	0.0000	3073.0	78.65%	32488.7	71.40%
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1e-23	-5.319e+01	0.0000	368.0	9.42%	2471.5	5.43%
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer	SCTGTCAMTCAN	1e-23	-5.299e+01	0.0000	457.0	11.70%	3284.4	7.22%
Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAW	1e-19	-4.537e+01	0.0000	747.0	19.12%	6277.4	13.80%
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer	TAATTAGN	1e-18	-4.156e+01	0.0000	1492.0	38.19%	14355.4	31.55%
Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer	AGGTGTGAAM	1e-17	-4.113e+01	0.0000	1413.0	36.17%	13497.0	29.66%
Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer	ATTAACACCT	1e-17	-3.975e+01	0.0000	2439.0	62.43%	25324.3	55.65%
Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer	CVGTSCTCCC	1e-12	-2.855e+01	0.0000	2011.0	51.47%	20813.9	45.74%
CHR(?)/Hela-CellCycle-Expression/Homer	SRGTTTCAAA	1e-11	-2.709e+01	0.0000	905.0	23.16%	8505.8	18.69%
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	MTGATGCAAT	1e-11	-2.595e+01	0.0000	385.0	9.85%	3150.3	6.92%
Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer	GTTGCCATGGCAACM	1e-10	-2.511e+01	0.0000	153.0	3.92%	991.7	2.18%
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1e-9	-2.263e+01	0.0000	1809.0	46.30%	18794.4	41.30%
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1e-9	-2.206e+01	0.0000	153.0	3.92%	1036.1	2.28%
RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer	CGGTTGCCATGGCAAC	1e-9	-2.074e+01	0.0000	133.0	3.40%	880.9	1.94%
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer	YTGCCAAG	1e-8	-1.951e+01	0.0000	1827.0	46.76%	19180.4	42.15%
MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	RRCAGCTGYTSY	1e-8	-1.920e+01	0.0000	919.0	23.52%	8996.6	19.77%
NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	GATGACTCAGCA	1e-8	-1.917e+01	0.0000	116.0	2.97%	755.4	1.66%
Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	KGTTGCCATGGCAA	1e-7	-1.756e+01	0.0000	287.0	7.35%	2401.0	5.28%
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1e-7	-1.697e+01	0.0000	1102.0	28.21%	11127.7	24.45%
CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan et al.)/Homer	CCATATATGGNM	1e-7	-1.668e+01	0.0000	410.0	10.49%	3675.7	8.08%
X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	GGTTGCCATGGCAA	1e-7	-1.665e+01	0.0000	176.0	4.50%	1344.2	2.95%
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer	ADBTAATTAR	1e-6	-1.579e+01	0.0000	1962.0	50.22%	20978.4	46.10%
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1e-6	-1.485e+01	0.0000	92.0	2.35%	609.9	1.34%
Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer	ATATGCAAAT	1e-6	-1.448e+01	0.0000	445.0	11.39%	4121.5	9.06%
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1e-6	-1.426e+01	0.0000	843.0	21.58%	8417.2	18.50%
STAT6(Stat)/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer	TTCCKNAGAA	1e-6	-1.409e+01	0.0000	749.0	19.17%	7398.6	16.26%
Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGCATAATTCA	1e-5	-1.334e+01	0.0000	515.0	13.18%	4910.4	10.79%
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	1e-5	-1.290e+01	0.0000	535.0	13.69%	5144.5	11.31%
TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer	YCWGGAATGY	1e-5	-1.287e+01	0.0000	852.0	21.81%	8595.2	18.89%
CEBP(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1e-5	-1.164e+01	0.0001	779.0	19.94%	7864.2	17.28%
Brachyury(T-box)/Mesoendoderm-Brachyury-ChIP-exo(GSE54963)/Homer	ANTTMRCASBNNNGTGYKAAN	1e-4	-1.120e+01	0.0001	427.0	10.93%	4070.4	8.95%
Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer	VCAGCTGYTG	1e-4	-1.120e+01	0.0001	1050.0	26.87%	10904.6	23.96%
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer	VNRVCAGCTGGY	1e-4	-1.117e+01	0.0001	1268.0	32.45%	13361.8	29.36%
MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1e-4	-1.046e+01	0.0002	1165.0	29.82%	12250.4	26.92%
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1e-4	-1.039e+01	0.0002	96.0	2.46%	722.0	1.59%
Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer	AGGTGHCAGACA	1e-4	-1.038e+01	0.0002	278.0	7.12%	2538.9	5.58%
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1e-4	-1.015e+01	0.0002	882.0	22.57%	9100.1	20.00%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e-4	-9.706e+00	0.0003	181.0	4.63%	1568.3	3.45%
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1e-4	-9.230e+00	0.0005	302.0	7.73%	2835.9	6.23%
STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer	ABTTCYYRRGAA	1e-3	-9.120e+00	0.0006	716.0	18.33%	7328.0	16.10%
NFAT:AP1(RHD,bZIP)/Jurkat-NFATC1-ChIP-Seq(Jolma et al.)/Homer	SARTGGAAAAWRTGAGTCAB	1e-3	-8.833e+00	0.0007	248.0	6.35%	2286.3	5.02%
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	1e-3	-8.572e+00	0.0009	1620.0	41.46%	17597.2	38.67%
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma et al.)/Homer	ATTTTCCATT	1e-3	-8.169e+00	0.0014	1050.0	26.87%	11134.9	24.47%
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer	GKTAATGR	1e-3	-7.666e+00	0.0022	2602.0	66.60%	29149.2	64.06%
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	1e-2	-6.810e+00	0.0052	797.0	20.40%	8402.5	18.47%
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer	MAATCACTGC	1e-2	-6.765e+00	0.0053	812.0	20.78%	8574.9	18.84%
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer	CCWGGAATGY	1e-2	-6.492e+00	0.0069	1002.0	25.65%	10740.5	23.60%
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1e-2	-6.418e+00	0.0073	360.0	9.21%	3597.6	7.91%
PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer	ACCRTGACTAATTNN	1e-2	-6.123e+00	0.0096	285.0	7.29%	2803.3	6.16%
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer	CTAATKGV	1e-2	-5.957e+00	0.0112	2133.0	54.59%	23821.2	52.35%
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	ATGACGTCATCY	1e-2	-5.751e+00	0.0135	360.0	9.21%	3638.8	8.00%
ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer	AGGAARCAGCTG	1e-2	-5.675e+00	0.0144	142.0	3.63%	1308.6	2.88%
CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	GHCACGTG	1e-2	-5.635e+00	0.0147	629.0	16.10%	6621.5	14.55%
Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer	GCCACACCCA	1e-2	-5.451e+00	0.0174	368.0	9.42%	3745.7	8.23%
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1e-2	-5.047e+00	0.0257	253.0	6.48%	2518.1	5.53%
RBPJ:Ebox(?,bHLH)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	GGGRAARRGRMCAGMTG	1e-2	-4.994e+00	0.0267	407.0	10.42%	4206.1	9.24%
EBNA1(EBV virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	1e-2	-4.870e+00	0.0298	28.0	0.72%	196.2	0.43%
HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer	BSTTCTRGAABVTTCYAGAA	1e-2	-4.864e+00	0.0298	221.0	5.66%	2183.8	4.80%
HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer	TTCTAGAABNTTCTA	1e-2	-4.703e+00	0.0342	343.0	8.78%	3522.2	7.74%
c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer	VCCACGTG	1e-2	-4.610e+00	0.0370	429.0	10.98%	4479.4	9.84%
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	1e-1	-4.516e+00	0.0401	365.0	9.34%	3778.7	8.30%
Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo et al.)/Homer	TBGCACGCAA	1e-1	-4.462e+00	0.0417	731.0	18.71%	7877.6	17.31%
ETS:RUNX(ETS,Runt)/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer	RCAGGATGTGGT	1e-1	-4.343e+00	0.0463	109.0	2.79%	1017.8	2.24%
OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAACAATG	1e-1	-4.298e+00	0.0478	259.0	6.63%	2629.4	5.78%
TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer	CCWGGAATGY	1e-1	-4.291e+00	0.0478	628.0	16.07%	6733.3	14.80%
Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1e-1	-4.189e+00	0.0520	348.0	8.91%	3615.7	7.95%
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCAT	1e-1	-4.130e+00	0.0544	246.0	6.30%	2498.2	5.49%
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer	WGGGGATTTCCC	1e-1	-4.111e+00	0.0548	555.0	14.21%	5930.9	13.03%
Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer	NNVVCAGCTGBN	1e-1	-4.110e+00	0.0548	1552.0	39.72%	17315.0	38.05%
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer	YCATYAATCA	1e-1	-4.087e+00	0.0548	1156.0	29.59%	12760.7	28.04%
BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer	NHAACBGYYV	1e-1	-4.087e+00	0.0548	1687.0	43.18%	18879.5	41.49%
IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	ACTGAAACCA	1e-1	-3.848e+00	0.0678	513.0	13.13%	5484.2	12.05%
CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	NTNATGCAAYMNNHTGMAAY	1e-1	-3.792e+00	0.0709	169.0	4.33%	1683.0	3.70%
MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer	GCTGASTCAGCA	1e-1	-3.728e+00	0.0746	319.0	8.16%	3330.1	7.32%
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1e-1	-3.702e+00	0.0757	123.0	3.15%	1193.3	2.62%
ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer	AGTTTCASTTTC	1e-1	-3.690e+00	0.0758	74.0	1.89%	678.2	1.49%
KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer	DGGGYGKGGC	1e-1	-3.649e+00	0.0781	1089.0	27.87%	12051.4	26.48%
Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer	NNNCTTTCCAGGAAA	1e-1	-3.630e+00	0.0787	1576.0	40.34%	17662.3	38.81%
IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	GAAAGTGAAAGT	1e-1	-3.530e+00	0.0860	177.0	4.53%	1784.9	3.92%
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	CTGGCAGSCTGCCA	1e-1	-3.313e+00	0.1056	484.0	12.39%	5212.0	11.45%
Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer	YTAATYNRATTA	1e-1	-3.255e+00	0.1107	491.0	12.57%	5297.6	11.64%
STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer	NYTTCCWGGAAR	1e-1	-3.206e+00	0.1150	1146.0	29.33%	12769.8	28.06%
Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer	GKVTCADRTTWC	1e-1	-3.155e+00	0.1197	290.0	7.42%	3056.0	6.72%
ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer	GGVTCTCGCGAGAAC	1e-1	-2.816e+00	0.1663	16.0	0.41%	120.0	0.26%
USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	SGTCACGTGR	1e-1	-2.816e+00	0.1663	475.0	12.16%	5166.0	11.35%
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	1e-1	-2.815e+00	0.1663	1655.0	42.36%	18712.9	41.12%
Atf2(bZIP)/3T3L1-Atf2-ChIP-Seq(GSE56872)/Homer	NRRTGACGTCAT	1e-1	-2.772e+00	0.1685	383.0	9.80%	4132.8	9.08%
AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	TGGCAGTTGG	1e-1	-2.549e+00	0.2084	1696.0	43.41%	19237.1	42.28%
NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer	GGAAATTCCC	1e-1	-2.504e+00	0.2158	62.0	1.59%	599.9	1.32%
Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	CACAGCAGGGGG	1e-1	-2.502e+00	0.2158	646.0	16.53%	7148.1	15.71%
SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	AVCAGCTG	1e-1	-2.471e+00	0.2188	3362.0	86.05%	38797.2	85.26%
GATA(Zf),IR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NAGATWNBNATCTNN	1e-1	-2.457e+00	0.2196	105.0	2.69%	1065.6	2.34%
PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1e-1	-2.412e+00	0.2276	714.0	18.27%	7938.6	17.45%
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1e0	-2.199e+00	0.2788	99.0	2.53%	1015.2	2.23%
HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer	TACGTGCV	1e0	-2.158e+00	0.2878	249.0	6.37%	2688.4	5.91%
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1e0	-2.077e+00	0.3093	232.0	5.94%	2505.2	5.51%
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1e0	-2.030e+00	0.3209	195.0	4.99%	2094.6	4.60%
GATA:SCL(Zf,bHLH)/Ter119-SCL-ChIP-Seq(GSE18720)/Homer	CRGCTGBNGNSNNSAGATAA	1e0	-2.011e+00	0.3242	153.0	3.92%	1626.6	3.57%
NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber et al.)/Homer	GGGGGAATCCCC	1e0	-1.950e+00	0.3415	97.0	2.48%	1009.3	2.22%
MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer	RTCATGTGAC	1e0	-1.916e+00	0.3502	983.0	25.16%	11115.5	24.43%
Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer	GGTTAAWCATTAA	1e0	-1.896e+00	0.3539	179.0	4.58%	1928.0	4.24%
SpiB(ETS)/OCILY3-SPIB-ChIP-Seq(GSE56857)/Homer	AAAGRGGAAGTG	1e0	-1.772e+00	0.3973	297.0	7.60%	3274.4	7.20%
NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer	CYTGGCABNSTGCCAR	1e0	-1.752e+00	0.4015	359.0	9.19%	3982.9	8.75%
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	1e0	-1.717e+00	0.4123	616.0	15.77%	6929.9	15.23%
STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer	RTTTCTNAGAAA	1e0	-1.708e+00	0.4126	430.0	11.01%	4799.4	10.55%
LXRE(NR),DR4/RAW-LXRb.biotin-ChIP-Seq(GSE21512)/Homer	RGGTTACTANAGGTCA	1e0	-1.634e+00	0.4405	60.0	1.54%	621.0	1.36%
Atf7(bZIP)/3T3L1-Atf7-ChIP-Seq(GSE56872)/Homer	NGRTGACGTCAY	1e0	-1.570e+00	0.4653	533.0	13.64%	6002.2	13.19%
GATA(Zf),IR3/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NNNNNBAGATAWYATCTVHN	1e0	-1.527e+00	0.4817	176.0	4.50%	1930.5	4.24%
E-box(bHLH)/Promoter/Homer	SSGGTCACGTGA	1e0	-1.448e+00	0.5172	65.0	1.66%	688.7	1.51%
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1e0	-1.412e+00	0.5314	1071.0	27.41%	12244.3	26.91%
Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer	SAGATAAGRV	1e0	-1.349e+00	0.5616	683.0	17.48%	7773.8	17.08%
EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer	DGTCCCYRGGGA	1e0	-1.315e+00	0.5763	220.0	5.63%	2456.7	5.40%
Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer	SSCMATWAAA	1e0	-1.274e+00	0.5952	800.0	20.48%	9142.0	20.09%
Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer	SVYTTCCNGGAARB	1e0	-1.257e+00	0.6008	826.0	21.14%	9448.0	20.76%
Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer	CGGTCACSCCAC	1e0	-1.248e+00	0.6017	138.0	3.53%	1529.7	3.36%
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson et al.)/Homer	GYCATCMATCAT	1e0	-1.233e+00	0.6061	149.0	3.81%	1656.4	3.64%
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	1e0	-1.232e+00	0.6061	109.0	2.79%	1201.6	2.64%
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1e0	-1.146e+00	0.6503	1849.0	47.33%	21358.0	46.94%
HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer	RTACGTGC	1e0	-1.120e+00	0.6626	1124.0	28.77%	12939.0	28.43%
PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GTCACGCTCSCTGM	1e0	-1.116e+00	0.6626	107.0	2.74%	1190.7	2.62%
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1e0	-1.097e+00	0.6677	9.0	0.23%	87.4	0.19%
Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1e0	-1.070e+00	0.6807	1324.0	33.89%	15276.8	33.57%
Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer	BBCTTATCTS	1e0	-1.062e+00	0.6809	767.0	19.63%	8814.9	19.37%
EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer	GTCCCCWGGGGA	1e0	-1.055e+00	0.6810	1016.0	26.00%	11704.2	25.72%
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NWGGGTGTGGCY	1e0	-1.050e+00	0.6810	214.0	5.48%	2425.3	5.33%
bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer	KCACGTGMCN	1e0	-1.044e+00	0.6810	308.0	7.88%	3509.9	7.71%
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	ACAGGAAGTG	1e0	-1.006e+00	0.6995	1192.0	30.51%	13763.6	30.25%
T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer	ACTTTCGTTTCT	1e0	-9.783e-01	0.7141	14.0	0.36%	146.7	0.32%
p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	ACATGCCCGGGCAT	1e0	-9.582e-01	0.7233	15.0	0.38%	158.8	0.35%
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer	NATTTCCNGGAAAT	1e0	-9.522e-01	0.7233	355.0	9.09%	4070.7	8.95%
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	1e0	-9.084e-01	0.7495	867.0	22.19%	10019.9	22.02%
HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer	GCACGTACCC	1e0	-8.804e-01	0.7654	356.0	9.11%	4097.9	9.01%
Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGMATATDC	1e0	-8.077e-01	0.8174	1300.0	33.27%	15089.8	33.16%
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1e0	-8.037e-01	0.8174	1777.0	45.48%	20643.4	45.37%
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski et al.)/Homer	MACAGGAAGT	1e0	-7.907e-01	0.8201	381.0	9.75%	4408.1	9.69%
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1e0	-7.767e-01	0.8260	1685.0	43.13%	19583.9	43.04%
Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer	CTTCCGGGAA	1e0	-7.487e-01	0.8437	545.0	13.95%	6326.9	13.90%
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	ATTTCCTGTN	1e0	-7.298e-01	0.8541	882.0	22.57%	10254.4	22.53%
Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer	ACTYKNATTCGTGNTACTTC	1e0	-6.981e-01	0.8757	86.0	2.20%	997.0	2.19%
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1e0	-6.847e-01	0.8816	4.0	0.10%	43.7	0.10%
Pax7(Paired,Homeobox),long/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCHGATTAC	1e0	-6.785e-01	0.8816	29.0	0.74%	335.8	0.74%
GATA3(Zf),DR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATGKDGAGATAAG	1e0	-6.659e-01	0.8866	108.0	2.76%	1258.6	2.77%
E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer	DNRCAGCTGY	1e0	-6.632e-01	0.8866	1393.0	35.65%	16232.8	35.67%
ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	ACAGGAAGTG	1e0	-6.373e-01	0.9006	1717.0	43.95%	20018.7	43.99%
Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer	RTCACSCCAY	1e0	-6.354e-01	0.9006	213.0	5.45%	2489.5	5.47%
GFY(?)/Promoter/Homer	ACTACAATTCCC	1e0	-6.184e-01	0.9060	55.0	1.41%	645.8	1.42%
Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer	CCATTGTATGCAAAT	1e0	-5.892e-01	0.9270	168.0	4.30%	1973.9	4.34%
E2F(E2F)/Hela-CellCycle-Expression/Homer	TTSGCGCGAAAA	1e0	-5.670e-01	0.9418	19.0	0.49%	226.3	0.50%
GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer	VAGRACAKWCTGTYC	1e0	-5.580e-01	0.9444	301.0	7.70%	3537.8	7.77%
Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer	NBWGATAAGR	1e0	-4.328e-01	1.0000	1149.0	29.41%	13505.0	29.68%
THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1e0	-4.167e-01	1.0000	433.0	11.08%	5133.8	11.28%
PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GCAGCCAAGCRTGACH	1e0	-3.930e-01	1.0000	380.0	9.73%	4520.7	9.93%
E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer	CWGGCGGGAA	1e0	-3.686e-01	1.0000	85.0	2.18%	1040.8	2.29%
GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer	CGTGGGTGGTCC	1e0	-3.482e-01	1.0000	115.0	2.94%	1403.3	3.08%
Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer	ASWTCAAAGG	1e0	-2.907e-01	1.0000	310.0	7.93%	3739.4	8.22%
Pax7(Paired,Homeobox),longest/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	NTAATTDGCYAATTANNWWD	1e0	-2.905e-01	1.0000	35.0	0.90%	451.4	0.99%
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1e0	-2.842e-01	1.0000	2042.0	52.27%	24025.6	52.80%
HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer	GGCCATAAATCA	1e0	-2.479e-01	1.0000	761.0	19.48%	9083.9	19.96%
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1e0	-2.349e-01	1.0000	925.0	23.68%	11020.8	24.22%
Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer	GTCATGCHTGRCTGS	1e0	-2.222e-01	1.0000	341.0	8.73%	4143.7	9.11%
AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer	SCCTSAGGSCAW	1e0	-2.041e-01	1.0000	831.0	21.27%	9943.3	21.85%
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	1e0	-1.934e-01	1.0000	487.0	12.46%	5894.8	12.95%
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	TGACCTTTNCNT	1e0	-1.631e-01	1.0000	206.0	5.27%	2567.6	5.64%
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer	GGCCATAAATCA	1e0	-1.477e-01	1.0000	571.0	14.61%	6930.8	15.23%
Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer	ACAGCTGTTN	1e0	-1.427e-01	1.0000	2415.0	61.81%	28513.0	62.66%
GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer	NRGVACABNVTGTYCY	1e0	-1.366e-01	1.0000	160.0	4.10%	2028.1	4.46%
p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer	NNDRCATGYCYNRRCATGYH	1e0	-1.286e-01	1.0000	387.0	9.91%	4762.6	10.47%
GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATAASR	1e0	-1.272e-01	1.0000	1631.0	41.75%	19414.8	42.67%
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1e0	-1.202e-01	1.0000	684.0	17.51%	8300.7	18.24%
AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer	ATGCCCTGAGGC	1e0	-1.119e-01	1.0000	625.0	16.00%	7612.6	16.73%
NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer	KCCACGTGAC	1e0	-8.810e-02	1.0000	1172.0	30.00%	14107.7	31.00%
p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer	RRCATGYCYRGRCATGYYYN	1e0	-8.611e-02	1.0000	107.0	2.74%	1414.6	3.11%
p53(p53)/Saos-p53-ChIP-Seq/Homer	RRCATGYCYRGRCATGYYYN	1e0	-8.611e-02	1.0000	107.0	2.74%	1414.6	3.11%
ETS(ETS)/Promoter/Homer	AACCGGAAGT	1e0	-6.520e-02	1.0000	303.0	7.76%	3830.8	8.42%
NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer	CTGCGCATGCGC	1e0	-5.809e-02	1.0000	53.0	1.36%	756.2	1.66%
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1e0	-5.478e-02	1.0000	3166.0	81.03%	37321.7	82.02%
GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer	RGGATTAR	1e0	-4.000e-02	1.0000	1384.0	35.42%	16730.9	36.77%
CTCF-SatelliteElement(Zf?)/CD4+-CTCF-ChIP-Seq(Barski et al.)/Homer	TGCAGTTCCMVNWRTGGCCA	1e0	-3.940e-02	1.0000	16.0	0.41%	276.1	0.61%
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer	ASWTCCTGBT	1e0	-3.653e-02	1.0000	1112.0	28.46%	13543.2	29.76%
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	1e0	-3.160e-02	1.0000	34.0	0.87%	531.4	1.17%
NRF(NRF)/Promoter/Homer	STGCGCATGCGC	1e0	-3.001e-02	1.0000	128.0	3.28%	1744.2	3.83%
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	1e0	-2.639e-02	1.0000	1160.0	29.69%	14157.2	31.11%
TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer	ACWTCAAAGG	1e0	-2.409e-02	1.0000	89.0	2.28%	1262.1	2.77%
CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer	GCTAATCC	1e0	-2.234e-02	1.0000	2365.0	60.53%	28251.8	62.09%
bZIP:IRF(bZIP,IRF)/Th17-BatF-ChIP-Seq(GSE39756)/Homer	NAGTTTCABTHTGACTNW	1e0	-2.002e-02	1.0000	557.0	14.26%	7018.8	15.42%
NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WNTGTTTRYTTTGGCA	1e0	-1.383e-02	1.0000	39.0	1.00%	628.0	1.38%
Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer	NYTAATCCYB	1e0	-1.328e-02	1.0000	955.0	24.44%	11822.5	25.98%
Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer	ASATCAAAGGVA	1e0	-1.185e-02	1.0000	530.0	13.57%	6747.3	14.83%
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1e0	-1.184e-02	1.0000	430.0	11.01%	5535.1	12.16%
YY1(Zf)/Promoter/Homer	CAAGATGGCGGC	1e0	-1.169e-02	1.0000	54.0	1.38%	837.8	1.84%
PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer	RGGTCTCTAACY	1e0	-1.089e-02	1.0000	342.0	8.75%	4468.2	9.82%
E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	NVCACCTGBN	1e0	-9.921e-03	1.0000	1346.0	34.45%	16484.9	36.23%
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1e0	-9.212e-03	1.0000	2412.0	61.74%	28915.0	63.54%
Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer	RRSCACTYAA	1e0	-5.837e-03	1.0000	2301.0	58.89%	27692.2	60.86%
BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer	GNCACGTG	1e0	-5.401e-03	1.0000	1923.0	49.22%	23319.7	51.25%
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	VACAGGAAAT	1e0	-5.262e-03	1.0000	618.0	15.82%	7890.1	17.34%
Pax7(Paired,Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCAATTA	1e0	-4.429e-03	1.0000	94.0	2.41%	1408.3	3.09%
EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	AVCAGGAAGT	1e0	-3.775e-03	1.0000	1415.0	36.22%	17417.6	38.28%
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1e0	-2.970e-03	1.0000	2663.0	68.16%	31931.4	70.17%
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1e0	-1.657e-03	1.0000	2313.0	59.20%	27978.0	61.48%
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	AVCCGGAAGT	1e0	-1.586e-03	1.0000	443.0	11.34%	5862.8	12.88%
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer	NRAACCRGTTYRAACCRGYT	1e0	-7.860e-04	1.0000	125.0	3.20%	1893.6	4.16%
Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer	GTRGGTCASTGGGTCA	1e0	-7.240e-04	1.0000	118.0	3.02%	1804.5	3.97%
ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	AACCGGAAGT	1e0	-6.600e-04	1.0000	1409.0	36.06%	17538.2	38.54%
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski et al.)/Homer	GCTGTGGTTW	1e0	-5.500e-04	1.0000	784.0	20.07%	10102.5	22.20%
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	RACCGGAAGT	1e0	-4.430e-04	1.0000	919.0	23.52%	11747.2	25.82%
c-Myc(bHLH)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	VVCCACGTGG	1e0	-3.260e-04	1.0000	568.0	14.54%	7517.6	16.52%
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	RGCCATTAAC	1e0	-3.090e-04	1.0000	3213.0	82.24%	38337.0	84.25%
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer	BCCATTGTTC	1e0	-2.630e-04	1.0000	922.0	23.60%	11829.5	26.00%
n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	VRCCACGTGG	1e0	-1.180e-04	1.0000	742.0	18.99%	9719.4	21.36%
HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer	NCYAATAAAA	1e0	-7.500e-05	1.0000	1217.0	31.15%	15467.8	33.99%
Max(bHLH)/K562-Max-ChIP-Seq(GSE31477)/Homer	RCCACGTGGYYN	1e0	-4.300e-05	1.0000	768.0	19.66%	10112.4	22.22%
ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer	VAGGTCACNSTGACC	1e0	-2.000e-05	1.0000	235.0	6.01%	3500.8	7.69%
GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer	AAACYKGTTWDACMRGTTTB	1e0	-1.200e-05	1.0000	371.0	9.50%	5275.3	11.59%
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1e0	-3.000e-06	1.0000	457.0	11.70%	6431.1	14.13%
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1e0	-3.000e-06	1.0000	329.0	8.42%	4804.8	10.56%
Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer	RSCACTYRAG	1e0	-3.000e-06	1.0000	2669.0	68.31%	32586.6	71.61%
FOXA1:AR(Forkhead,NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	AGTAAACAAAAAAGAACAND	1e0	-2.000e-06	1.0000	60.0	1.54%	1184.3	2.60%
GATA3(Zf),DR8/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATSTNDNNDSAGATAASN	1e0	-1.000e-06	1.0000	95.0	2.43%	1730.4	3.80%
Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer	TAATCCCN	1e0	-0.000e+00	1.0000	3283.0	84.03%	39475.1	86.75%
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	1e0	-0.000e+00	1.0000	1558.0	39.88%	19976.9	43.90%
Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer	YCTTTGTTCC	1e0	-0.000e+00	1.0000	849.0	21.73%	11535.2	25.35%
FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong et al.)/Homer	AGGTCANTGACCTB	1e0	-0.000e+00	1.0000	293.0	7.50%	4520.2	9.93%
Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer	CCWTTGTYYB	1e0	-0.000e+00	1.0000	1612.0	41.26%	20771.3	45.65%
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	1e0	-0.000e+00	1.0000	462.0	11.82%	6811.0	14.97%
VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer	ARAGGTCANWGAGTTCANNN	1e0	-0.000e+00	1.0000	157.0	4.02%	2828.5	6.22%
Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer	GYMATAAAAH	1e0	-0.000e+00	1.0000	744.0	19.04%	10546.3	23.18%
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	1e0	-0.000e+00	1.0000	1678.0	42.95%	21870.6	48.06%
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	AAACCACARM	1e0	-0.000e+00	1.0000	1077.0	27.57%	14702.1	32.31%
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan et al.)/Homer	CTGTTTAC	1e0	-0.000e+00	1.0000	1805.0	46.20%	23390.3	51.40%
Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer	NNNVCTGWGYAAACASN	1e0	-0.000e+00	1.0000	1092.0	27.95%	14975.8	32.91%
TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer	GAGGTCAAAGGTCA	1e0	-0.000e+00	1.0000	79.0	2.02%	1780.1	3.91%
CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski et al.)/Homer	AYAGTGCCMYCTRGTGGCCA	1e0	-0.000e+00	1.0000	116.0	2.97%	2363.3	5.19%
BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer	CNNBRGCGCCCCCTGSTGGC	1e0	-0.000e+00	1.0000	140.0	3.58%	2783.5	6.12%
ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer	AGGCCTAG	1e0	-0.000e+00	1.0000	1289.0	32.99%	17620.8	38.72%
HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer	NTATYGATCH	1e0	-0.000e+00	1.0000	445.0	11.39%	7083.7	15.57%
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1e0	-0.000e+00	1.0000	880.0	22.52%	12669.2	27.84%
RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer	AGGTCAAGGTCA	1e0	-0.000e+00	1.0000	52.0	1.33%	1485.7	3.27%
HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer	CARRGKBCAAAGTYCA	1e0	-0.000e+00	1.0000	418.0	10.70%	6800.8	14.95%
NFY(CCAAT)/Promoter/Homer	RGCCAATSRG	1e0	-0.000e+00	1.0000	660.0	16.89%	9964.4	21.90%
GFY-Staf(?,Zf)/Promoter/Homer	RACTACAATTCCCAGAAKGC	1e0	-0.000e+00	1.0000	32.0	0.82%	1175.1	2.58%
PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer	TGACCTTTGCCCCA	1e0	-0.000e+00	1.0000	857.0	21.93%	12551.5	27.58%
RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer	TAGGGCAAAGGTCA	1e0	-0.000e+00	1.0000	983.0	25.16%	14121.1	31.03%
Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer	CAAAGGTCAG	1e0	0.000e+00	1.0000	1642.0	42.03%	24996.5	54.93%
Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer	KTGACCTTGA	1e0	0.000e+00	1.0000	492.0	12.59%	8900.4	19.56%
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1e0	0.000e+00	1.0000	1054.0	26.98%	17607.7	38.69%
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer	WAAGTAAACA	1e0	0.000e+00	1.0000	864.0	22.11%	15009.4	32.98%
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer	CYTGTTTACWYW	1e0	0.000e+00	1.0000	679.0	17.38%	11574.8	25.44%
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1e0	0.000e+00	1.0000	318.0	8.14%	6372.6	14.00%
Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer	BTCAAGGTCA	1e0	0.000e+00	1.0000	605.0	15.49%	10169.3	22.35%
Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer	BTCAAGGTCA	1e0	0.000e+00	1.0000	475.0	12.16%	7806.9	17.16%
RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	SAAACCACAG	1e0	0.000e+00	1.0000	664.0	17.00%	10651.9	23.41%
ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer	AGGCCTRG	1e0	0.000e+00	1.0000	1100.0	28.15%	15689.5	34.48%