| Rank | Motif | Name | P-value | log P-pvalue | q-value (Benjamini) | # Target Sequences with Motif | % of Targets Sequences with Motif | # Background Sequences with Motif | % of Background Sequences with Motif | Motif File |
PDF |
| 1 |  | Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer | 1e-222 | -5.128e+02 | 0.0000 | 845.0 | 51.49% | 8090.2 | 17.00% | motif file (matrix) |
pdf |
| 2 |  | Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer | 1e-211 | -4.866e+02 | 0.0000 | 903.0 | 55.03% | 9600.1 | 20.17% | motif file (matrix) |
pdf |
| 3 |  | BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer | 1e-203 | -4.682e+02 | 0.0000 | 892.0 | 54.36% | 9616.1 | 20.20% | motif file (matrix) |
pdf |
| 4 |  | Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer | 1e-198 | -4.570e+02 | 0.0000 | 623.0 | 37.96% | 4751.8 | 9.98% | motif file (matrix) |
pdf |
| 5 |  | Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer | 1e-187 | -4.328e+02 | 0.0000 | 520.0 | 31.69% | 3412.4 | 7.17% | motif file (matrix) |
pdf |
| 6 |  | AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer | 1e-184 | -4.259e+02 | 0.0000 | 917.0 | 55.88% | 10772.2 | 22.63% | motif file (matrix) |
pdf |
| 7 |  | NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer | 1e-93 | -2.151e+02 | 0.0000 | 879.0 | 53.56% | 13907.9 | 29.22% | motif file (matrix) |
pdf |
| 8 |  | Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer | 1e-88 | -2.037e+02 | 0.0000 | 985.0 | 60.02% | 16987.4 | 35.69% | motif file (matrix) |
pdf |
| 9 |  | Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer | 1e-73 | -1.693e+02 | 0.0000 | 324.0 | 19.74% | 3002.3 | 6.31% | motif file (matrix) |
pdf |
| 10 |  | Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer | 1e-68 | -1.571e+02 | 0.0000 | 1309.0 | 79.77% | 28303.6 | 59.46% | motif file (matrix) |
pdf |
| 11 |  | Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer | 1e-56 | -1.293e+02 | 0.0000 | 1061.0 | 64.66% | 21494.7 | 45.16% | motif file (matrix) |
pdf |
| 12 |  | Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer | 1e-44 | -1.036e+02 | 0.0000 | 171.0 | 10.42% | 1378.4 | 2.90% | motif file (matrix) |
pdf |
| 13 |  | RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer | 1e-41 | -9.458e+01 | 0.0000 | 154.0 | 9.38% | 1225.6 | 2.57% | motif file (matrix) |
pdf |
| 14 |  | X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer | 1e-37 | -8.524e+01 | 0.0000 | 177.0 | 10.79% | 1695.1 | 3.56% | motif file (matrix) |
pdf |
| 15 |  | Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer | 1e-36 | -8.302e+01 | 0.0000 | 410.0 | 24.98% | 6344.4 | 13.33% | motif file (matrix) |
pdf |
| 16 |  | Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer | 1e-30 | -6.918e+01 | 0.0000 | 368.0 | 22.43% | 5817.7 | 12.22% | motif file (matrix) |
pdf |
| 17 |  | Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer | 1e-29 | -6.803e+01 | 0.0000 | 235.0 | 14.32% | 3046.4 | 6.40% | motif file (matrix) |
pdf |
| 18 |  | NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer | 1e-27 | -6.408e+01 | 0.0000 | 1022.0 | 62.28% | 23183.0 | 48.70% | motif file (matrix) |
pdf |
| 19 |  | Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer | 1e-21 | -5.047e+01 | 0.0000 | 1327.0 | 80.87% | 33473.4 | 70.32% | motif file (matrix) |
pdf |
| 20 |  | SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer | 1e-20 | -4.787e+01 | 0.0000 | 1580.0 | 96.28% | 42880.2 | 90.08% | motif file (matrix) |
pdf |
| 21 |  | NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer | 1e-20 | -4.775e+01 | 0.0000 | 95.0 | 5.79% | 882.8 | 1.85% | motif file (matrix) |
pdf |
| 22 |  | Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer | 1e-18 | -4.167e+01 | 0.0000 | 86.0 | 5.24% | 821.4 | 1.73% | motif file (matrix) |
pdf |
| 23 |  | Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer | 1e-15 | -3.462e+01 | 0.0000 | 75.0 | 4.57% | 743.5 | 1.56% | motif file (matrix) |
pdf |
| 24 |  | MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer | 1e-14 | -3.432e+01 | 0.0000 | 231.0 | 14.08% | 3904.8 | 8.20% | motif file (matrix) |
pdf |
| 25 |  | Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer | 1e-14 | -3.381e+01 | 0.0000 | 454.0 | 27.67% | 9330.9 | 19.60% | motif file (matrix) |
pdf |
| 26 |  | Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer | 1e-11 | -2.644e+01 | 0.0000 | 332.0 | 20.23% | 6666.2 | 14.00% | motif file (matrix) |
pdf |
| 27 |  | Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer | 1e-10 | -2.414e+01 | 0.0000 | 128.0 | 7.80% | 1991.1 | 4.18% | motif file (matrix) |
pdf |
| 28 |  | Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer | 1e-9 | -2.191e+01 | 0.0000 | 589.0 | 35.89% | 13709.2 | 28.80% | motif file (matrix) |
pdf |
| 29 |  | RBPJ:Ebox(?,bHLH)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer | 1e-8 | -1.847e+01 | 0.0000 | 264.0 | 16.09% | 5435.4 | 11.42% | motif file (matrix) |
pdf |
| 30 |  | E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer | 1e-7 | -1.808e+01 | 0.0000 | 801.0 | 48.81% | 19982.2 | 41.98% | motif file (matrix) |
pdf |
| 31 |  | ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer | 1e-7 | -1.794e+01 | 0.0000 | 97.0 | 5.91% | 1530.0 | 3.21% | motif file (matrix) |
pdf |
| 32 |  | Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan et al.)/Homer | 1e-7 | -1.719e+01 | 0.0000 | 1014.0 | 61.79% | 26265.9 | 55.18% | motif file (matrix) |
pdf |
| 33 |  | Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer | 1e-6 | -1.526e+01 | 0.0000 | 388.0 | 23.64% | 8866.9 | 18.63% | motif file (matrix) |
pdf |
| 34 |  | MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer | 1e-6 | -1.454e+01 | 0.0000 | 625.0 | 38.09% | 15388.7 | 32.33% | motif file (matrix) |
pdf |
| 35 |  | Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer | 1e-6 | -1.444e+01 | 0.0000 | 177.0 | 10.79% | 3529.7 | 7.41% | motif file (matrix) |
pdf |
| 36 |  | GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer | 1e-5 | -1.378e+01 | 0.0000 | 199.0 | 12.13% | 4110.6 | 8.64% | motif file (matrix) |
pdf |
| 37 |  | NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer | 1e-5 | -1.336e+01 | 0.0000 | 244.0 | 14.87% | 5271.1 | 11.07% | motif file (matrix) |
pdf |
| 38 |  | Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer | 1e-5 | -1.309e+01 | 0.0000 | 1057.0 | 64.41% | 28004.3 | 58.83% | motif file (matrix) |
pdf |
| 39 |  | MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer | 1e-5 | -1.285e+01 | 0.0000 | 477.0 | 29.07% | 11486.6 | 24.13% | motif file (matrix) |
pdf |
| 40 |  | NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma et al.)/Homer | 1e-5 | -1.215e+01 | 0.0000 | 513.0 | 31.26% | 12547.7 | 26.36% | motif file (matrix) |
pdf |
| 41 |  | NFAT:AP1(RHD,bZIP)/Jurkat-NFATC1-ChIP-Seq(Jolma et al.)/Homer | 1e-5 | -1.168e+01 | 0.0001 | 127.0 | 7.74% | 2475.5 | 5.20% | motif file (matrix) |
pdf |
| 42 |  | CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer | 1e-5 | -1.167e+01 | 0.0001 | 441.0 | 26.87% | 10629.2 | 22.33% | motif file (matrix) |
pdf |
| 43 |  | Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer | 1e-5 | -1.167e+01 | 0.0001 | 300.0 | 18.28% | 6856.5 | 14.40% | motif file (matrix) |
pdf |
| 44 |  | MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer | 1e-5 | -1.161e+01 | 0.0001 | 534.0 | 32.54% | 13186.5 | 27.70% | motif file (matrix) |
pdf |
| 45 |  | Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer | 1e-4 | -1.143e+01 | 0.0001 | 440.0 | 26.81% | 10628.1 | 22.33% | motif file (matrix) |
pdf |
| 46 |  | Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer | 1e-4 | -1.100e+01 | 0.0001 | 614.0 | 37.42% | 15487.7 | 32.54% | motif file (matrix) |
pdf |
| 47 |  | Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer | 1e-4 | -1.077e+01 | 0.0001 | 602.0 | 36.68% | 15179.7 | 31.89% | motif file (matrix) |
pdf |
| 48 |  | Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer | 1e-4 | -1.014e+01 | 0.0002 | 140.0 | 8.53% | 2881.5 | 6.05% | motif file (matrix) |
pdf |
| 49 |  | Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer | 1e-4 | -9.687e+00 | 0.0003 | 289.0 | 17.61% | 6750.8 | 14.18% | motif file (matrix) |
pdf |
| 50 |  | GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer | 1e-3 | -9.204e+00 | 0.0005 | 119.0 | 7.25% | 2424.8 | 5.09% | motif file (matrix) |
pdf |
| 51 |  | Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer | 1e-3 | -8.479e+00 | 0.0011 | 201.0 | 12.25% | 4553.6 | 9.57% | motif file (matrix) |
pdf |
| 52 |  | Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer | 1e-3 | -8.440e+00 | 0.0011 | 831.0 | 50.64% | 22026.9 | 46.27% | motif file (matrix) |
pdf |
| 53 |  | CEBP(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer | 1e-3 | -8.434e+00 | 0.0011 | 341.0 | 20.78% | 8276.0 | 17.39% | motif file (matrix) |
pdf |
| 54 |  | Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer | 1e-3 | -8.099e+00 | 0.0015 | 826.0 | 50.34% | 21935.5 | 46.08% | motif file (matrix) |
pdf |
| 55 |  | E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer | 1e-3 | -8.025e+00 | 0.0016 | 764.0 | 46.56% | 20162.9 | 42.36% | motif file (matrix) |
pdf |
| 56 |  | TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer | 1e-3 | -7.238e+00 | 0.0034 | 483.0 | 29.43% | 12335.3 | 25.91% | motif file (matrix) |
pdf |
| 57 |  | Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer | 1e-3 | -6.984e+00 | 0.0043 | 209.0 | 12.74% | 4904.2 | 10.30% | motif file (matrix) |
pdf |
| 58 |  | STAT6(Stat)/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer | 1e-3 | -6.961e+00 | 0.0043 | 333.0 | 20.29% | 8238.3 | 17.31% | motif file (matrix) |
pdf |
| 59 |  | FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer | 1e-2 | -6.626e+00 | 0.0059 | 278.0 | 16.94% | 6788.3 | 14.26% | motif file (matrix) |
pdf |
| 60 |  | Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer | 1e-2 | -6.507e+00 | 0.0066 | 1301.0 | 79.28% | 36260.0 | 76.17% | motif file (matrix) |
pdf |
| 61 |  | AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer | 1e-2 | -6.363e+00 | 0.0075 | 1463.0 | 89.15% | 41286.5 | 86.73% | motif file (matrix) |
pdf |
| 62 |  | STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer | 1e-2 | -6.279e+00 | 0.0080 | 538.0 | 32.78% | 14025.4 | 29.46% | motif file (matrix) |
pdf |
| 63 |  | Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer | 1e-2 | -6.121e+00 | 0.0092 | 535.0 | 32.60% | 13967.8 | 29.34% | motif file (matrix) |
pdf |
| 64 |  | GATA:SCL(Zf,bHLH)/Ter119-SCL-ChIP-Seq(GSE18720)/Homer | 1e-2 | -5.855e+00 | 0.0118 | 86.0 | 5.24% | 1828.9 | 3.84% | motif file (matrix) |
pdf |
| 65 |  | Brachyury(T-box)/Mesoendoderm-Brachyury-ChIP-exo(GSE54963)/Homer | 1e-2 | -5.773e+00 | 0.0126 | 198.0 | 12.07% | 4742.3 | 9.96% | motif file (matrix) |
pdf |
| 66 |  | Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer | 1e-2 | -5.572e+00 | 0.0152 | 699.0 | 42.60% | 18724.4 | 39.34% | motif file (matrix) |
pdf |
| 67 |  | Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer | 1e-2 | -5.304e+00 | 0.0196 | 179.0 | 10.91% | 4289.1 | 9.01% | motif file (matrix) |
pdf |
| 68 |  | PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer | 1e-2 | -4.835e+00 | 0.0309 | 260.0 | 15.84% | 6536.6 | 13.73% | motif file (matrix) |
pdf |
| 69 |  | NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer | 1e-2 | -4.774e+00 | 0.0323 | 638.0 | 38.88% | 17139.2 | 36.01% | motif file (matrix) |
pdf |
| 70 |  | TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer | 1e-2 | -4.684e+00 | 0.0349 | 371.0 | 22.61% | 9623.6 | 20.22% | motif file (matrix) |
pdf |