Motif Name	Consensus	P-value	Log P-value	q-value (Benjamini)	# of Target Sequences with Motif(of 347)	% of Target Sequences with Motif	# of Background Sequences with Motif(of 49019)	% of Background Sequences with Motif
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer	BCCATTGTTC	1e-9	-2.120e+01	0.0000	134.0	38.62%	11676.4	23.82%
Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer	CCWTTGTYYB	1e-6	-1.388e+01	0.0001	196.0	56.48%	21366.2	43.59%
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	1e-5	-1.342e+01	0.0001	183.0	52.74%	19686.6	40.16%
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	1e-4	-1.115e+01	0.0009	195.0	56.20%	21982.6	44.84%
Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer	YCTTTGTTCC	1e-3	-9.110e+00	0.0058	113.0	32.56%	11618.5	23.70%
NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer	CYTGGCABNSTGCCAR	1e-3	-7.729e+00	0.0194	66.0	19.02%	6183.4	12.61%
Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer	VCAGCTGYTG	1e-3	-7.683e+00	0.0194	137.0	39.48%	15173.0	30.95%
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	ATGACGTCATCY	1e-2	-6.609e+00	0.0445	46.0	13.26%	4097.9	8.36%
MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	RRCAGCTGYTSY	1e-2	-6.580e+00	0.0445	113.0	32.56%	12387.3	25.27%
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1e-2	-5.808e+00	0.0793	17.0	4.90%	1119.9	2.28%
MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer	RTCATGTGAC	1e-2	-5.498e+00	0.0983	120.0	34.58%	13702.7	27.95%
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1e-2	-5.370e+00	0.1024	32.0	9.22%	2761.6	5.63%
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1e-2	-5.298e+00	0.1024	80.0	23.05%	8575.7	17.49%
CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski et al.)/Homer	AYAGTGCCMYCTRGTGGCCA	1e-2	-5.008e+00	0.1260	30.0	8.65%	2607.9	5.32%
Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1e-2	-4.869e+00	0.1352	160.0	46.11%	19393.8	39.56%
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	1e-2	-4.717e+00	0.1475	82.0	23.63%	9033.0	18.43%
Atf2(bZIP)/3T3L1-Atf2-ChIP-Seq(GSE56872)/Homer	NRRTGACGTCAT	1e-2	-4.691e+00	0.1475	48.0	13.83%	4787.3	9.77%
ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer	AGGAARCAGCTG	1e-2	-4.612e+00	0.1475	19.0	5.48%	1477.8	3.01%
PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1e-1	-4.394e+00	0.1716	65.0	18.73%	6982.7	14.24%
Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer	NNNVCTGWGYAAACASN	1e-1	-4.115e+00	0.2155	134.0	38.62%	16189.7	33.03%
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCAT	1e-1	-3.881e+00	0.2593	24.0	6.92%	2156.2	4.40%
Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1e-1	-3.844e+00	0.2593	43.0	12.39%	4421.5	9.02%
Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGCATAATTCA	1e-1	-3.790e+00	0.2593	32.0	9.22%	3109.0	6.34%
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	MTGATGCAAT	1e-1	-3.782e+00	0.2593	28.0	8.07%	2639.8	5.39%
Atf7(bZIP)/3T3L1-Atf7-ChIP-Seq(GSE56872)/Homer	NGRTGACGTCAY	1e-1	-3.749e+00	0.2593	61.0	17.58%	6704.3	13.68%
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer	VNRVCAGCTGGY	1e-1	-3.659e+00	0.2615	143.0	41.21%	17654.2	36.01%
CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	NTNATGCAAYMNNHTGMAAY	1e-1	-3.605e+00	0.2658	17.0	4.90%	1426.2	2.91%
USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	SGTCACGTGR	1e-1	-3.525e+00	0.2777	59.0	17.00%	6533.1	13.33%
HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer	TTCTAGAABNTTCTA	1e-1	-3.511e+00	0.2777	35.0	10.09%	3544.0	7.23%
Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer	TGCGTGGGYG	1e-1	-3.483e+00	0.2777	87.0	25.07%	10190.2	20.79%
Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer	CCATTGTATGCAAAT	1e-1	-3.476e+00	0.2777	18.0	5.19%	1560.1	3.18%
BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer	CNNBRGCGCCCCCTGSTGGC	1e-1	-3.472e+00	0.2777	33.0	9.51%	3312.5	6.76%
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1e-1	-3.350e+00	0.2807	96.0	27.67%	11448.9	23.36%
Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer	VGCTGWCAVB	1e-1	-3.334e+00	0.2807	200.0	57.64%	25817.4	52.67%
Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer	GTTGCCATGGCAACM	1e-1	-3.172e+00	0.3162	16.0	4.61%	1394.6	2.84%
c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer	VCCACGTG	1e-1	-3.160e+00	0.3162	51.0	14.70%	5653.0	11.53%
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1e-1	-3.135e+00	0.3162	32.0	9.22%	3287.2	6.71%
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma et al.)/Homer	ATTTTCCATT	1e-1	-3.013e+00	0.3415	88.0	25.36%	10551.5	21.53%
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1e-1	-3.002e+00	0.3415	33.0	9.51%	3450.6	7.04%
HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer	BSTTCTRGAABVTTCYAGAA	1e-1	-2.878e+00	0.3711	25.0	7.20%	2511.9	5.12%
E2F(E2F)/Hela-CellCycle-Expression/Homer	TTSGCGCGAAAA	1e-1	-2.784e+00	0.3979	5.0	1.44%	297.5	0.61%
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1e-1	-2.641e+00	0.4483	113.0	32.56%	14134.3	28.83%
Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer	NNVVCAGCTGBN	1e-1	-2.511e+00	0.4983	177.0	51.01%	23097.3	47.12%
ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer	VAGGTCACNSTGACC	1e-1	-2.434e+00	0.5261	43.0	12.39%	4918.9	10.03%
Brachyury(T-box)/Mesoendoderm-Brachyury-ChIP-exo(GSE54963)/Homer	ANTTMRCASBNNNGTGYKAAN	1e0	-2.274e+00	0.6034	38.0	10.95%	4342.0	8.86%
CEBP(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1e0	-2.165e+00	0.6588	54.0	15.56%	6480.6	13.22%
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	1e0	-2.164e+00	0.6588	20.0	5.76%	2106.2	4.30%
ETS(ETS)/Promoter/Homer	AACCGGAAGT	1e0	-2.145e+00	0.6588	41.0	11.82%	4786.0	9.76%
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	GATGASTCATCN	1e0	-2.099e+00	0.6605	30.0	8.65%	3386.6	6.91%
NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WNTGTTTRYTTTGGCA	1e0	-2.045e+00	0.6833	7.0	2.02%	591.4	1.21%
CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	GHCACGTG	1e0	-1.914e+00	0.7633	66.0	19.02%	8222.3	16.77%
p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer	NNDRCATGYCYNRRCATGYH	1e0	-1.835e+00	0.8107	51.0	14.70%	6260.3	12.77%
RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer	CGGTTGCCATGGCAAC	1e0	-1.802e+00	0.8217	12.0	3.46%	1227.2	2.50%
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1e0	-1.794e+00	0.8217	38.0	10.95%	4560.0	9.30%
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	CTGGCAGSCTGCCA	1e0	-1.772e+00	0.8217	61.0	17.58%	7638.0	15.58%
GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer	VAGRACAKWCTGTYC	1e0	-1.764e+00	0.8217	34.0	9.80%	4048.9	8.26%
MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1e0	-1.760e+00	0.8217	127.0	36.60%	16692.0	34.05%
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer	YCATYAATCA	1e0	-1.758e+00	0.8217	87.0	25.07%	11179.0	22.80%
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer	ADBTAATTAR	1e0	-1.751e+00	0.8217	132.0	38.04%	17394.4	35.48%
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer	GKTAATGR	1e0	-1.745e+00	0.8217	193.0	55.62%	25964.5	52.97%
bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer	KCACGTGMCN	1e0	-1.704e+00	0.8217	36.0	10.37%	4340.5	8.85%
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	1e0	-1.688e+00	0.8217	40.0	11.53%	4878.7	9.95%
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1e0	-1.687e+00	0.8217	25.0	7.20%	2910.0	5.94%
E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer	CWGGCGGGAA	1e0	-1.680e+00	0.8217	14.0	4.03%	1508.5	3.08%
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1e0	-1.598e+00	0.8217	169.0	48.70%	22710.1	46.33%
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer	YTGCCAAG	1e0	-1.576e+00	0.8270	179.0	51.59%	24140.1	49.25%
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer	NRAACCRGTTYRAACCRGYT	1e0	-1.556e+00	0.8310	22.0	6.34%	2574.1	5.25%
BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer	NHAACBGYYV	1e0	-1.534e+00	0.8373	147.0	42.36%	19682.3	40.15%
Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer	AGGTGTGAAM	1e0	-1.504e+00	0.8504	111.0	31.99%	14692.8	29.97%
Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	KGTTGCCATGGCAA	1e0	-1.464e+00	0.8721	26.0	7.49%	3139.1	6.40%
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer	SCTGTCAMTCAN	1e0	-1.442e+00	0.8794	34.0	9.80%	4213.1	8.59%
SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	AVCAGCTG	1e0	-1.441e+00	0.8794	316.0	91.07%	43988.4	89.74%
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer	CYTGTTTACWYW	1e0	-1.396e+00	0.8953	81.0	23.34%	10639.1	21.70%
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer	CCWGGAATGY	1e0	-1.392e+00	0.8953	87.0	25.07%	11470.5	23.40%
GFY(?)/Promoter/Homer	ACTACAATTCCC	1e0	-1.336e+00	0.9252	7.0	2.02%	731.6	1.49%
ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer	AGTTTCASTTTC	1e0	-1.330e+00	0.9252	6.0	1.73%	609.4	1.24%
Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer	CVGTSCTCCC	1e0	-1.314e+00	0.9252	196.0	56.48%	26808.9	54.69%
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	1e0	-1.272e+00	0.9483	7.0	2.02%	747.1	1.52%
E-box(bHLH)/Promoter/Homer	SSGGTCACGTGA	1e0	-1.143e+00	1.0000	8.0	2.31%	911.3	1.86%
PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer	RGGTCTCTAACY	1e0	-1.118e+00	1.0000	39.0	11.24%	5094.9	10.39%
EBNA1(EBV virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	1e0	-1.069e+00	1.0000	3.0	0.86%	293.6	0.60%
THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1e0	-1.068e+00	1.0000	55.0	15.85%	7335.0	14.96%
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer	WAAGTAAACA	1e0	-1.059e+00	1.0000	90.0	25.94%	12205.5	24.90%
n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	VRCCACGTGG	1e0	-1.057e+00	1.0000	86.0	24.78%	11649.6	23.77%
HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer	GGCCATAAATCA	1e0	-1.054e+00	1.0000	57.0	16.43%	7624.1	15.55%
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1e0	-1.054e+00	1.0000	6.0	1.73%	678.3	1.38%
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	1e0	-1.053e+00	1.0000	56.0	16.14%	7487.4	15.27%
FOXA1:AR(Forkhead,NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	AGTAAACAAAAAAGAACAND	1e0	-1.049e+00	1.0000	8.0	2.31%	941.4	1.92%
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer	TAATTAGN	1e0	-1.046e+00	1.0000	86.0	24.78%	11661.5	23.79%
HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer	NTATYGATCH	1e0	-1.044e+00	1.0000	44.0	12.68%	5837.9	11.91%
NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	GATGACTCAGCA	1e0	-1.035e+00	1.0000	7.0	2.02%	814.2	1.66%
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1e0	-1.031e+00	1.0000	9.0	2.59%	1079.5	2.20%
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1e0	-9.946e-01	1.0000	303.0	87.32%	42419.8	86.54%
Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer	NATGASTCABNN	1e0	-9.525e-01	1.0000	35.0	10.09%	4668.0	9.52%
Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer	GTRGGTCASTGGGTCA	1e0	-9.524e-01	1.0000	20.0	5.76%	2603.8	5.31%
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer	ASWTCCTGBT	1e0	-9.441e-01	1.0000	116.0	33.43%	15976.7	32.59%
NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber et al.)/Homer	GGGGGAATCCCC	1e0	-9.137e-01	1.0000	12.0	3.46%	1531.5	3.12%
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	VACAGGAAAT	1e0	-9.033e-01	1.0000	67.0	19.31%	9162.6	18.69%
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1e0	-8.949e-01	1.0000	6.0	1.73%	726.5	1.48%
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1e0	-8.831e-01	1.0000	73.0	21.04%	10024.0	20.45%
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski et al.)/Homer	MACAGGAAGT	1e0	-8.822e-01	1.0000	40.0	11.53%	5418.8	11.05%
GATA:SCL(Zf,bHLH)/Ter119-SCL-ChIP-Seq(GSE18720)/Homer	CRGCTGBNGNSNNSAGATAA	1e0	-8.764e-01	1.0000	14.0	4.03%	1823.1	3.72%
STAT6(Stat)/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer	TTCCKNAGAA	1e0	-8.708e-01	1.0000	52.0	14.99%	7101.3	14.49%
Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	DATGASTCATHN	1e0	-8.584e-01	1.0000	64.0	18.44%	8791.1	17.93%
TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer	YCWGGAATGY	1e0	-8.503e-01	1.0000	61.0	17.58%	8380.6	17.10%
Pax7(Paired,Homeobox),longest/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	NTAATTDGCYAATTANNWWD	1e0	-8.201e-01	1.0000	2.0	0.58%	211.5	0.43%
X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	GGTTGCCATGGCAA	1e0	-8.062e-01	1.0000	12.0	3.46%	1584.9	3.23%
Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer	NNATGASTCATH	1e0	-8.060e-01	1.0000	53.0	15.27%	7307.9	14.91%
Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer	CGGTCACSCCAC	1e0	-8.041e-01	1.0000	16.0	4.61%	2140.7	4.37%
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1e0	-7.545e-01	1.0000	128.0	36.89%	17923.9	36.56%
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1e0	-7.484e-01	1.0000	175.0	50.43%	24562.5	50.11%
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	1e0	-7.427e-01	1.0000	77.0	22.19%	10754.4	21.94%
TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer	ACWTCAAAGG	1e0	-7.279e-01	1.0000	9.0	2.59%	1206.2	2.46%
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1e0	-7.271e-01	1.0000	197.0	56.77%	27701.3	56.51%
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan et al.)/Homer	CTGTTTAC	1e0	-7.108e-01	1.0000	176.0	50.72%	24763.3	50.52%
Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer	GTCATGCHTGRCTGS	1e0	-7.067e-01	1.0000	43.0	12.39%	6007.2	12.25%
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1e0	-6.875e-01	1.0000	20.0	5.76%	2780.7	5.67%
OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAACAATG	1e0	-6.737e-01	1.0000	13.0	3.75%	1800.4	3.67%
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1e0	-6.670e-01	1.0000	55.0	15.85%	7747.9	15.81%
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	1e0	-6.442e-01	1.0000	46.0	13.26%	6501.5	13.26%
p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	ACATGCCCGGGCAT	1e0	-6.414e-01	1.0000	2.0	0.58%	249.5	0.51%
BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	DATGASTCAT	1e0	-6.347e-01	1.0000	62.0	17.87%	8779.5	17.91%
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer	CTAATKGV	1e0	-6.306e-01	1.0000	161.0	46.40%	22781.5	46.47%
HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer	RTACGTGC	1e0	-6.198e-01	1.0000	105.0	30.26%	14887.1	30.37%
PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer	ACCRTGACTAATTNN	1e0	-6.197e-01	1.0000	18.0	5.19%	2549.4	5.20%
bZIP:IRF(bZIP,IRF)/Th17-BatF-ChIP-Seq(GSE39756)/Homer	NAGTTTCABTHTGACTNW	1e0	-6.193e-01	1.0000	42.0	12.10%	5963.5	12.17%
PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GCAGCCAAGCRTGACH	1e0	-6.041e-01	1.0000	43.0	12.39%	6123.6	12.49%
Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer	AGGTGHCAGACA	1e0	-6.000e-01	1.0000	24.0	6.92%	3422.8	6.98%
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1e0	-5.996e-01	1.0000	106.0	30.55%	15063.0	30.73%
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	1e0	-5.934e-01	1.0000	58.0	16.71%	8268.1	16.87%
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1e0	-5.893e-01	1.0000	218.0	62.82%	30894.5	63.02%
E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer	DNRCAGCTGY	1e0	-5.817e-01	1.0000	155.0	44.67%	22022.6	44.93%
Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer	GYMATAAAAH	1e0	-5.785e-01	1.0000	54.0	15.56%	7720.7	15.75%
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NWGGGTGTGGCY	1e0	-5.691e-01	1.0000	27.0	7.78%	3881.1	7.92%
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer	WGGGGATTTCCC	1e0	-5.650e-01	1.0000	50.0	14.41%	7169.6	14.63%
Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer	ACTYKNATTCGTGNTACTTC	1e0	-5.526e-01	1.0000	6.0	1.73%	865.5	1.77%
GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer	NRGVACABNVTGTYCY	1e0	-5.347e-01	1.0000	17.0	4.90%	2476.0	5.05%
GATA(Zf),IR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NAGATWNBNATCTNN	1e0	-5.334e-01	1.0000	6.0	1.73%	875.8	1.79%
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1e0	-5.302e-01	1.0000	17.0	4.90%	2481.0	5.06%
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	AVCCGGAAGT	1e0	-5.175e-01	1.0000	52.0	14.99%	7521.9	15.34%
IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	ACTGAAACCA	1e0	-5.031e-01	1.0000	36.0	10.37%	5248.2	10.71%
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1e0	-5.024e-01	1.0000	36.0	10.37%	5249.6	10.71%
Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer	ATTAACACCT	1e0	-4.997e-01	1.0000	183.0	52.74%	26135.7	53.32%
ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer	GGVTCTCGCGAGAAC	1e0	-4.981e-01	1.0000	1.0	0.29%	133.0	0.27%
LXRE(NR),DR4/RAW-LXRb.biotin-ChIP-Seq(GSE21512)/Homer	RGGTTACTANAGGTCA	1e0	-4.789e-01	1.0000	5.0	1.44%	755.5	1.54%
Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer	NGCGTGGGCGGR	1e0	-4.700e-01	1.0000	14.0	4.03%	2097.0	4.28%
Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGMATATDC	1e0	-4.668e-01	1.0000	83.0	23.92%	12032.5	24.55%
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	1e0	-4.539e-01	1.0000	128.0	36.89%	18457.9	37.65%
NFAT:AP1(RHD,bZIP)/Jurkat-NFATC1-ChIP-Seq(Jolma et al.)/Homer	SARTGGAAAAWRTGAGTCAB	1e0	-4.414e-01	1.0000	14.0	4.03%	2122.0	4.33%
STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer	RTTTCTNAGAAA	1e0	-4.396e-01	1.0000	30.0	8.65%	4464.9	9.11%
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer	CYAAAAATAG	1e0	-4.348e-01	1.0000	29.0	8.36%	4325.7	8.82%
Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer	GGTTAAWCATTAA	1e0	-4.327e-01	1.0000	8.0	2.31%	1236.3	2.52%
Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer	RTCACSCCAY	1e0	-4.264e-01	1.0000	22.0	6.34%	3314.1	6.76%
IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	GAAAGTGAAAGT	1e0	-4.228e-01	1.0000	10.0	2.88%	1544.2	3.15%
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1e0	-4.209e-01	1.0000	55.0	15.85%	8106.9	16.54%
STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer	ABTTCYYRRGAA	1e0	-4.078e-01	1.0000	46.0	13.26%	6831.0	13.94%
STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer	NYTTCCWGGAAR	1e0	-4.020e-01	1.0000	86.0	24.78%	12590.6	25.68%
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	1e0	-4.019e-01	1.0000	110.0	31.70%	16015.1	32.67%
RBPJ:Ebox(?,bHLH)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	GGGRAARRGRMCAGMTG	1e0	-3.635e-01	1.0000	37.0	10.66%	5597.6	11.42%
AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	TGGCAGTTGG	1e0	-3.626e-01	1.0000	145.0	41.79%	21083.7	43.01%
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1e0	-3.612e-01	1.0000	259.0	74.64%	37090.3	75.66%
Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo et al.)/Homer	TBGCACGCAA	1e0	-3.556e-01	1.0000	61.0	17.58%	9097.0	18.56%
Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer	SSCMATWAAA	1e0	-3.482e-01	1.0000	48.0	13.83%	7227.1	14.74%
Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer	ACAGCTGTTN	1e0	-3.421e-01	1.0000	242.0	69.74%	34771.9	70.93%
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1e0	-3.410e-01	1.0000	9.0	2.59%	1465.2	2.99%
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1e0	-3.265e-01	1.0000	214.0	61.67%	30902.9	63.04%
Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer	YTAATYNRATTA	1e0	-3.223e-01	1.0000	21.0	6.05%	3302.6	6.74%
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	RACCGGAAGT	1e0	-3.217e-01	1.0000	94.0	27.09%	13924.4	28.41%
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1e0	-3.199e-01	1.0000	37.0	10.66%	5674.6	11.58%
ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	AACCGGAAGT	1e0	-3.198e-01	1.0000	140.0	40.35%	20490.8	41.80%
EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer	GTCCCCWGGGGA	1e0	-3.159e-01	1.0000	118.0	34.01%	17371.3	35.44%
Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer	ASATCAAAGGVA	1e0	-3.078e-01	1.0000	42.0	12.10%	6431.6	13.12%
AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer	ATGCCCTGAGGC	1e0	-3.057e-01	1.0000	81.0	23.34%	12097.8	24.68%
GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATAASR	1e0	-2.996e-01	1.0000	119.0	34.29%	17560.6	35.82%
Pax7(Paired,Homeobox),long/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCHGATTAC	1e0	-2.984e-01	1.0000	1.0	0.29%	191.6	0.39%
GFY-Staf(?,Zf)/Promoter/Homer	RACTACAATTCCCAGAAKGC	1e0	-2.908e-01	1.0000	6.0	1.73%	1042.6	2.13%
KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer	DGGGYGKGGC	1e0	-2.871e-01	1.0000	121.0	34.87%	17882.2	36.48%
GATA(Zf),IR3/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NNNNNBAGATAWYATCTVHN	1e0	-2.825e-01	1.0000	10.0	2.88%	1682.2	3.43%
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer	NATTTCCNGGAAAT	1e0	-2.819e-01	1.0000	23.0	6.63%	3665.0	7.48%
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1e0	-2.782e-01	1.0000	150.0	43.23%	22033.7	44.95%
Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer	NBWGATAAGR	1e0	-2.773e-01	1.0000	81.0	23.34%	12173.6	24.83%
EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer	DGTCCCYRGGGA	1e0	-2.697e-01	1.0000	23.0	6.63%	3686.4	7.52%
Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	CACAGCAGGGGG	1e0	-2.692e-01	1.0000	67.0	19.31%	10169.0	20.74%
p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer	RRCATGYCYRGRCATGYYYN	1e0	-2.678e-01	1.0000	11.0	3.17%	1856.8	3.79%
p53(p53)/Saos-p53-ChIP-Seq/Homer	RRCATGYCYRGRCATGYYYN	1e0	-2.678e-01	1.0000	11.0	3.17%	1856.8	3.79%
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer	GGCCATAAATCA	1e0	-2.653e-01	1.0000	36.0	10.37%	5635.5	11.50%
Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer	RRSCACTYAA	1e0	-2.632e-01	1.0000	209.0	60.23%	30389.5	61.99%
Max(bHLH)/K562-Max-ChIP-Seq(GSE31477)/Homer	RCCACGTGGYYN	1e0	-2.599e-01	1.0000	77.0	22.19%	11644.4	23.75%
HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer	TACGTGCV	1e0	-2.590e-01	1.0000	20.0	5.76%	3251.8	6.63%
Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer	AGGTGTCA	1e0	-2.588e-01	1.0000	259.0	74.64%	37347.9	76.19%
VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer	ARAGGTCANWGAGTTCANNN	1e0	-2.579e-01	1.0000	22.0	6.34%	3556.4	7.25%
NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer	GGAAATTCCC	1e0	-2.534e-01	1.0000	4.0	1.15%	748.3	1.53%
Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer	SAGATAAGRV	1e0	-2.448e-01	1.0000	47.0	13.54%	7308.4	14.91%
CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan et al.)/Homer	CCATATATGGNM	1e0	-2.426e-01	1.0000	24.0	6.92%	3887.3	7.93%
Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer	GCCACACCCA	1e0	-2.421e-01	1.0000	39.0	11.24%	6132.3	12.51%
c-Myc(bHLH)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	VVCCACGTGG	1e0	-2.382e-01	1.0000	59.0	17.00%	9087.6	18.54%
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	RGCCATTAAC	1e0	-2.281e-01	1.0000	282.0	81.27%	40583.7	82.79%
BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer	GNCACGTG	1e0	-2.198e-01	1.0000	180.0	51.87%	26473.2	54.01%
PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GTCACGCTCSCTGM	1e0	-2.117e-01	1.0000	9.0	2.59%	1616.6	3.30%
GATA3(Zf),DR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATGKDGAGATAAG	1e0	-2.112e-01	1.0000	5.0	1.44%	959.4	1.96%
NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer	CTGCGCATGCGC	1e0	-2.104e-01	1.0000	5.0	1.44%	960.9	1.96%
MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer	GCTGASTCAGCA	1e0	-2.061e-01	1.0000	24.0	6.92%	3963.8	8.09%
NFY(CCAAT)/Promoter/Homer	RGCCAATSRG	1e0	-2.055e-01	1.0000	70.0	20.17%	10795.3	22.02%
AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer	SCCTSAGGSCAW	1e0	-1.969e-01	1.0000	101.0	29.11%	15321.1	31.25%
CHR(?)/Hela-CellCycle-Expression/Homer	SRGTTTCAAA	1e0	-1.909e-01	1.0000	42.0	12.10%	6714.7	13.70%
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	1e0	-1.804e-01	1.0000	50.0	14.41%	7937.4	16.19%
GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer	CGTGGGTGGTCC	1e0	-1.798e-01	1.0000	13.0	3.75%	2310.9	4.71%
RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer	TAGGGCAAAGGTCA	1e0	-1.742e-01	1.0000	122.0	35.16%	18432.7	37.60%
GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer	RGGATTAR	1e0	-1.695e-01	1.0000	97.0	27.95%	14855.3	30.30%
Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAW	1e0	-1.661e-01	1.0000	29.0	8.36%	4827.6	9.85%
HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer	NCYAATAAAA	1e0	-1.623e-01	1.0000	74.0	21.33%	11540.9	23.54%
Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer	BBCTTATCTS	1e0	-1.613e-01	1.0000	51.0	14.70%	8152.2	16.63%
ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer	AGGCCTAG	1e0	-1.600e-01	1.0000	165.0	47.55%	24614.1	50.21%
FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong et al.)/Homer	AGGTCANTGACCTB	1e0	-1.521e-01	1.0000	40.0	11.53%	6539.6	13.34%
Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer	SVYTTCCNGGAARB	1e0	-1.469e-01	1.0000	67.0	19.31%	10577.6	21.58%
RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer	AGGTCAAGGTCA	1e0	-1.460e-01	1.0000	8.0	2.31%	1561.2	3.18%
SpiB(ETS)/OCILY3-SPIB-ChIP-Seq(GSE56857)/Homer	AAAGRGGAAGTG	1e0	-1.453e-01	1.0000	18.0	5.19%	3181.7	6.49%
Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer	ATATGCAAAT	1e0	-1.438e-01	1.0000	16.0	4.61%	2868.6	5.85%
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	1e0	-1.271e-01	1.0000	107.0	30.84%	16507.6	33.68%
ETS:RUNX(ETS,Runt)/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer	RCAGGATGTGGT	1e0	-1.201e-01	1.0000	7.0	2.02%	1444.4	2.95%
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1e0	-1.174e-01	1.0000	174.0	50.14%	26115.6	53.28%
GATA3(Zf),DR8/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATSTNDNNDSAGATAASN	1e0	-1.075e-01	1.0000	7.0	2.02%	1473.6	3.01%
CTCF-SatelliteElement(Zf?)/CD4+-CTCF-ChIP-Seq(Barski et al.)/Homer	TGCAGTTCCMVNWRTGGCCA	1e0	-9.290e-02	1.0000	1.0	0.29%	341.0	0.70%
NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer	KCCACGTGAC	1e0	-8.527e-02	1.0000	108.0	31.12%	16922.3	34.52%
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	ACAGGAAGTG	1e0	-7.616e-02	1.0000	100.0	28.82%	15832.3	32.30%
Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer	GKVTCADRTTWC	1e0	-7.121e-02	1.0000	16.0	4.61%	3116.6	6.36%
ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	ACAGGAAGTG	1e0	-7.106e-02	1.0000	149.0	42.94%	22928.0	46.77%
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1e0	-6.515e-02	1.0000	81.0	23.34%	13140.0	26.81%
TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer	GAGGTCAAAGGTCA	1e0	-6.301e-02	1.0000	11.0	3.17%	2313.1	4.72%
Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer	ASWTCAAAGG	1e0	-6.288e-02	1.0000	18.0	5.19%	3488.9	7.12%
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	ATTTCCTGTN	1e0	-5.253e-02	1.0000	64.0	18.44%	10724.0	21.88%
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1e0	-4.337e-02	1.0000	32.0	9.22%	5886.7	12.01%
GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer	AAACYKGTTWDACMRGTTTB	1e0	-3.947e-02	1.0000	30.0	8.65%	5605.5	11.44%
Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer	CTTCCGGGAA	1e0	-3.818e-02	1.0000	41.0	11.82%	7357.7	15.01%
HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer	GCACGTACCC	1e0	-3.810e-02	1.0000	25.0	7.20%	4812.1	9.82%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e0	-3.598e-02	1.0000	7.0	2.02%	1744.7	3.56%
RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	SAAACCACAG	1e0	-3.090e-02	1.0000	73.0	21.04%	12352.0	25.20%
TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer	CCWGGAATGY	1e0	-3.064e-02	1.0000	39.0	11.24%	7137.3	14.56%
YY1(Zf)/Promoter/Homer	CAAGATGGCGGC	1e0	-3.038e-02	1.0000	3.0	0.86%	980.3	2.00%
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	TGACCTTTNCNT	1e0	-2.890e-02	1.0000	10.0	2.88%	2351.0	4.80%
Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer	BTCAAGGTCA	1e0	-2.717e-02	1.0000	56.0	16.14%	9833.8	20.06%
PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer	TGACCTTTGCCCCA	1e0	-2.636e-02	1.0000	97.0	27.95%	16005.3	32.65%
ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer	AGGCCTRG	1e0	-2.570e-02	1.0000	132.0	38.04%	21111.4	43.07%
Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer	NNNCTTTCCAGGAAA	1e0	-2.414e-02	1.0000	117.0	33.72%	18978.7	38.72%
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski et al.)/Homer	GCTGTGGTTW	1e0	-2.342e-02	1.0000	72.0	20.75%	12339.9	25.17%
Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer	NYTAATCCYB	1e0	-2.088e-02	1.0000	60.0	17.29%	10568.0	21.56%
Pax7(Paired,Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCAATTA	1e0	-1.789e-02	1.0000	2.0	0.58%	838.1	1.71%
Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer	RSCACTYRAG	1e0	-1.768e-02	1.0000	236.0	68.01%	35766.5	72.96%
HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer	CARRGKBCAAAGTYCA	1e0	-1.238e-02	1.0000	44.0	12.68%	8295.2	16.92%
EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	AVCAGGAAGT	1e0	-1.141e-02	1.0000	112.0	32.28%	18635.2	38.02%
NRF(NRF)/Promoter/Homer	STGCGCATGCGC	1e0	-1.032e-02	1.0000	8.0	2.31%	2225.4	4.54%
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1e0	-1.008e-02	1.0000	86.0	24.78%	14845.4	30.28%
Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer	CAAAGGTCAG	1e0	-8.691e-03	1.0000	195.0	56.20%	30536.0	62.29%
Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer	KTGACCTTGA	1e0	-6.472e-03	1.0000	58.0	16.71%	10757.4	21.95%
Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer	BTCAAGGTCA	1e0	-3.394e-03	1.0000	69.0	19.88%	12722.3	25.95%
CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer	GCTAATCC	1e0	-2.243e-03	1.0000	170.0	48.99%	27668.6	56.44%
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	AAACCACARM	1e0	-1.840e-03	1.0000	94.0	27.09%	16772.6	34.22%
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer	MAATCACTGC	1e0	-1.514e-03	1.0000	42.0	12.10%	8718.7	17.79%
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson et al.)/Homer	GYCATCMATCAT	1e0	-8.140e-04	1.0000	3.0	0.86%	1599.4	3.26%
Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer	TAATCCCN	1e0	-3.900e-05	1.0000	257.0	74.06%	40396.8	82.41%
E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	NVCACCTGBN	1e0	-0.000e+00	1.0000	109.0	31.41%	21990.7	44.86%
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1e0	0.000e+00	1.0000	0.0	0.00%	28.8	0.06%
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1e0	0.000e+00	1.0000	0.0	0.00%	110.7	0.23%
T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer	ACTTTCGTTTCT	1e0	0.000e+00	1.0000	0.0	0.00%	90.3	0.18%