Information for 8-GCATTGAAATTC (Motif 13)

A T C G T G A C C G T A G A C T A C G T T A C G C T G A C G T A T G C A A C G T C A G T G T A C
Reverse Opposite:
C A T G G T C A T C G A A C G T G C A T G A C T A T G C T G C A C G T A G C A T A C T G T A G C
p-value:1e-14
log p-value:-3.302e+01
Information Content per bp:1.705
Number of Target Sequences with motif64.0
Percentage of Target Sequences with motif8.82%
Number of Background Sequences with motif1385.5
Percentage of Background Sequences with motif2.84%
Average Position of motif in Targets398.3 +/- 286.9bp
Average Position of motif in Background409.0 +/- 254.5bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

LIN54/MA0619.1/Jaspar

Match Rank:1
Score:0.67
Offset:1
Orientation:reverse strand
Alignment:GCATTGAAATTC
-NATTCAAAT--
 A T C G T G A C C G T A G A C T A C G T T A C G C T G A C G T A T G C A A C G T C A G T G T A C
A C G T C T G A C T G A A C G T A C G T A G T C C T G A C G T A C G T A G C A T A C G T A C G T

PB0169.1_Sox15_2/Jaspar

Match Rank:2
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-GCATTGAAATTC--
TTGAATGAAATTCGA
 A C G T A T C G T G A C C G T A G A C T A C G T T A C G C T G A C G T A T G C A A C G T C A G T G T A C A C G T A C G T
A C G T A C G T T C A G C T G A G T C A A G C T A C T G C G T A G T C A C T G A C A G T G A C T G A T C T A C G T C G A

Hoxd12(Homeobox)/ChickenMSG-Hoxd12.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:3
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--GCATTGAAATTC
HDGYAATGAAAN--
 A C G T A C G T A T C G T G A C C G T A G A C T A C G T T A C G C T G A C G T A T G C A A C G T C A G T G T A C
G T C A C T G A T C A G G A T C T G C A T G C A A C G T T C A G C G T A C G T A C G T A G C T A A C G T A C G T

Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer

Match Rank:4
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:GCATTGAAATTC
CCTTTGATGT--
 A T C G T G A C C G T A G A C T A C G T T A C G C T G A C G T A T G C A A C G T C A G T G T A C
A T G C A G T C A C G T A C G T A C G T A T C G C G T A C G A T T A C G G A C T A C G T A C G T

CHR(?)/Hela-CellCycle-Expression/Homer

Match Rank:5
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-GCATTGAAATTC
CGGTTTCAAA---
 A C G T A T C G T G A C C G T A G A C T A C G T T A C G C T G A C G T A T G C A A C G T C A G T G T A C
T A G C T C A G C A T G G C A T A G C T C G A T A T G C C G T A C G T A G T C A A C G T A C G T A C G T

Hoxa10(Homeobox)/ChickenMSG-Hoxa10.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:6
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-GCATTGAAATTC
GGYAATGAAA---
 A C G T A T C G T G A C C G T A G A C T A C G T T A C G C T G A C G T A T G C A A C G T C A G T G T A C
C T A G T A C G G A C T T G C A T G C A C G A T T A C G C T G A T C G A C T G A A C G T A C G T A C G T

NFAT5/MA0606.1/Jaspar

Match Rank:7
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:GCATTGAAATTC
-NATGGAAAAN-
 A T C G T G A C C G T A G A C T A C G T T A C G C T G A C G T A T G C A A C G T C A G T G T A C
A C G T G C T A C T G A C G A T T C A G C T A G C G T A C G T A C G T A C G T A A C G T A C G T

Hoxd10(Homeobox)/ChickenMSG-Hoxd10.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:8
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-GCATTGAAATTC
GGCMATGAAA---
 A C G T A T C G T G A C C G T A G A C T A C G T T A C G C T G A C G T A T G C A A C G T C A G T G T A C
C T A G T A C G G A T C G T C A T C G A A C G T T C A G C G T A C G T A C G T A A C G T A C G T A C G T

NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer

Match Rank:9
Score:0.59
Offset:4
Orientation:forward strand
Alignment:GCATTGAAATTC--
----GGAAATTCCC
 A T C G T G A C C G T A G A C T A C G T T A C G C T G A C G T A T G C A A C G T C A G T G T A C A C G T A C G T
A C G T A C G T A C G T A C G T A C T G C A T G G C T A T C G A G C T A A G C T A G C T G T A C A G T C T G A C

PB0005.1_Bbx_1/Jaspar

Match Rank:10
Score:0.59
Offset:-4
Orientation:reverse strand
Alignment:----GCATTGAAATTC
NANTTCATTGAATTA-
 A C G T A C G T A C G T A C G T A T C G T G A C C G T A G A C T A C G T T A C G C T G A C G T A T G C A A C G T C A G T G T A C
G A T C C G T A T A G C C G A T C G A T T G A C G C T A G C A T C G A T A C T G C G T A G C T A G A C T C G A T C G T A A C G T