Information for 2-HAATKAGCAC (Motif 2)

G C A T G T C A G T C A C G A T A C G T C G T A T C A G G T A C G T C A A G T C
Reverse Opposite:
T C A G C A G T C A T G A G T C G C A T T G C A C G T A C A G T C A G T C G T A
p-value:1e-26
log p-value:-6.056e+01
Information Content per bp:1.636
Number of Target Sequences with motif247.0
Percentage of Target Sequences with motif34.02%
Number of Background Sequences with motif8497.3
Percentage of Background Sequences with motif17.45%
Average Position of motif in Targets444.1 +/- 281.7bp
Average Position of motif in Background414.1 +/- 256.7bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.20
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer

Match Rank:1
Score:0.77
Offset:0
Orientation:forward strand
Alignment:HAATKAGCAC
TAATTAGN--
 G C A T G T C A G T C A C G A T A C G T C G T A T C A G G T A C G T C A A G T C
A G C T G T C A C G T A A C G T A C G T C T G A T C A G A T G C A C G T A C G T

POU6F2/MA0793.1/Jaspar

Match Rank:2
Score:0.76
Offset:-1
Orientation:reverse strand
Alignment:-HAATKAGCAC
NTAATGAGCT-
 A C G T G C A T G T C A G T C A C G A T A C G T C G T A T C A G G T A C G T C A A G T C
C G T A C G A T T G C A C T G A C A G T C A T G G T C A C T A G A T G C G A C T A C G T

NOTO/MA0710.1/Jaspar

Match Rank:3
Score:0.76
Offset:-2
Orientation:reverse strand
Alignment:--HAATKAGCAC
NNTAATTAGN--
 A C G T A C G T G C A T G T C A G T C A C G A T A C G T C G T A T C A G G T A C G T C A A G T C
T A C G A G T C G A C T G T C A C G T A A C G T C A G T C G T A C T A G A T G C A C G T A C G T

POU3F3/MA0788.1/Jaspar

Match Rank:4
Score:0.75
Offset:0
Orientation:reverse strand
Alignment:HAATKAGCAC---
AAATTAGCATAAT
 G C A T G T C A G T C A C G A T A C G T C G T A T C A G G T A C G T C A A G T C A C G T A C G T A C G T
G C T A G C T A C G T A G A C T G C A T C G T A T C A G G T A C T G C A G C A T G C T A G C T A G C A T

PH0081.1_Pdx1/Jaspar

Match Rank:5
Score:0.75
Offset:-4
Orientation:forward strand
Alignment:----HAATKAGCAC--
AAGGTAATTAGCTCAT
 A C G T A C G T A C G T A C G T G C A T G T C A G T C A C G A T A C G T C G T A T C A G G T A C G T C A A G T C A C G T A C G T
T G C A T G C A C T A G A T C G G A C T T G C A G C T A C A G T A C G T C T G A T A C G G A T C G C A T T A G C C G T A C A G T

EMX2/MA0886.1/Jaspar

Match Rank:6
Score:0.75
Offset:-2
Orientation:forward strand
Alignment:--HAATKAGCAC
GCTAATTAGC--
 A C G T A C G T G C A T G T C A G T C A C G A T A C G T C G T A T C A G G T A C G T C A A G T C
T C A G A T G C G A C T G T C A C G T A A C G T A C G T C G T A T C A G A T G C A C G T A C G T

GBX1/MA0889.1/Jaspar

Match Rank:7
Score:0.74
Offset:-2
Orientation:forward strand
Alignment:--HAATKAGCAC
ACTAATTAGC--
 A C G T A C G T G C A T G T C A G T C A C G A T A C G T C G T A T C A G G T A C G T C A A G T C
T C G A A T G C G A C T T C G A T G C A G A C T G A C T G C T A T A C G A G T C A C G T A C G T

VSX2/MA0726.1/Jaspar

Match Rank:8
Score:0.74
Offset:-1
Orientation:reverse strand
Alignment:-HAATKAGCAC
NTAATTAG---
 A C G T G C A T G T C A G T C A C G A T A C G T C G T A T C A G G T A C G T C A A G T C
T G A C G A C T C G T A C T G A A C G T C G A T C T G A T C A G A C G T A C G T A C G T

LHX9(Homeobox)/Hct116-LHX9.V5-ChIP-Seq(GSE116822)/Homer

Match Rank:9
Score:0.74
Offset:-1
Orientation:reverse strand
Alignment:-HAATKAGCAC
CTAATTAGCN-
 A C G T G C A T G T C A G T C A C G A T A C G T C G T A T C A G G T A C G T C A A G T C
A G T C G A C T T G C A C T G A G A C T A C G T C T G A T C A G A T G C T A C G A C G T

EN1/MA0027.2/Jaspar

Match Rank:10
Score:0.74
Offset:-1
Orientation:forward strand
Alignment:-HAATKAGCAC
CTAATTAG---
 A C G T G C A T G T C A G T C A C G A T A C G T C G T A T C A G G T A C G T C A A G T C
A T G C G A C T T G C A G T C A A C G T A G C T C G T A T C A G A C G T A C G T A C G T