Information for 25-ACTGAGTGTT (Motif 33)

C G T A A G T C A C G T A C T G C G T A A C T G A C G T A C T G A C G T A C G T
Reverse Opposite:
C G T A C G T A A G T C C G T A A G T C A C G T A G T C C G T A A C T G A C G T
p-value:1e0
log p-value:-1.501e+00
Information Content per bp:1.530
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif0.41%
Number of Background Sequences with motif109.4
Percentage of Background Sequences with motif0.22%
Average Position of motif in Targets235.0 +/- 160.1bp
Average Position of motif in Background401.1 +/- 237.5bp
Strand Bias (log2 ratio + to - strand density)-3.3
Multiplicity (# of sites on avg that occur together)3.67
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer

Match Rank:1
Score:0.70
Offset:1
Orientation:forward strand
Alignment:ACTGAGTGTT-
-TTRAGTGSYK
 C G T A A G T C A C G T A C T G C G T A A C T G A C G T A C T G A C G T A C G T A C G T
A C G T A G C T G A C T C T A G C G T A C A T G C G A T C T A G A T C G G A C T C A G T

Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer

Match Rank:2
Score:0.68
Offset:1
Orientation:reverse strand
Alignment:ACTGAGTGTT-
-TTAAGTGCTT
 C G T A A G T C A C G T A C T G C G T A A C T G A C G T A C T G A C G T A C G T A C G T
A C G T A C G T C A G T T C G A C G T A A C T G A C G T C T A G A T G C A G C T A G C T

NKX2-5/MA0063.2/Jaspar

Match Rank:3
Score:0.68
Offset:-1
Orientation:reverse strand
Alignment:-ACTGAGTGTT
NNTTGAGTGNN
 A C G T C G T A A G T C A C G T A C T G C G T A A C T G A C G T A C T G A C G T A C G T
C G A T A G C T C G A T G C A T C T A G C G T A C T A G G A C T C T A G A C T G A G C T

MSANTD3/MA1523.1/Jaspar

Match Rank:4
Score:0.68
Offset:1
Orientation:reverse strand
Alignment:ACTGAGTGTT-
-GTGAGTGNAC
 C G T A A G T C A C G T A C T G C G T A A C T G A C G T A C T G A C G T A C G T A C G T
A C G T C A T G C A G T C T A G C G T A C T A G G C A T C T A G A C G T T G C A T A G C

Nkx2-5(var.2)/MA0503.1/Jaspar

Match Rank:5
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:ACTGAGTGTT-
CTTGAGTGGCT
 C G T A A G T C A C G T A C T G C G T A A C T G A C G T A C T G A C G T A C G T A C G T
A T G C G A C T C A G T C T A G C G T A A C T G C G A T A C T G A T C G G A T C G A C T

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:6
Score:0.65
Offset:1
Orientation:reverse strand
Alignment:ACTGAGTGTT-
-TTGAGTGSTT
 C G T A A G T C A C G T A C T G C G T A A C T G A C G T A C T G A C G T A C G T A C G T
A C G T G C A T A C G T C T A G C G T A C A T G C G A T C T A G A T C G G A C T G A C T

NKX2-2/MA1645.1/Jaspar

Match Rank:7
Score:0.64
Offset:-2
Orientation:reverse strand
Alignment:--ACTGAGTGTT--
NNNTTGAGTGGNNN
 A C G T A C G T C G T A A G T C A C G T A C T G C G T A A C T G A C G T A C T G A C G T A C G T A C G T A C G T
C G A T C G A T A G T C A G C T C A G T T A C G C G T A C A T G C G A T C T A G A C T G G C A T C G A T C T G A

Sox5/MA0087.1/Jaspar

Match Rank:8
Score:0.61
Offset:4
Orientation:forward strand
Alignment:ACTGAGTGTT-
----ATTGTTA
 C G T A A G T C A C G T A C T G C G T A A C T G A C G T A C T G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C G T A A C G T A C G T C T A G A G C T G A C T C G A T

Nkx3-2/MA0122.3/Jaspar

Match Rank:9
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:ACTGAGTGTT---
NTTAAGTGGTTNN
 C G T A A G T C A C G T A C T G C G T A A C T G A C G T A C T G A C G T A C G T A C G T A C G T A C G T
C G A T G C A T C G A T C T G A C G T A C A T G C G A T C T A G A C T G G C A T G C A T G C T A G C A T

PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer

Match Rank:10
Score:0.60
Offset:-2
Orientation:reverse strand
Alignment:--ACTGAGTGTT---
GVACAGNMTGTYCTB
 A C G T A C G T C G T A A G T C A C G T A C T G C G T A A C T G A C G T A C T G A C G T A C G T A C G T A C G T A C G T
C T A G T C G A C G T A T A G C C G T A C A T G C G T A T G A C G C A T T A C G G A C T A G C T G A T C G A C T A C T G