Information for 4-TBNYTGCCAR (Motif 4)

A C G T A G C T A T C G A G T C C G A T A T C G A T G C A G T C C G T A T C A G
Reverse Opposite:
A G T C A C G T A C T G A T C G A T G C C G T A T C A G T A G C T C G A T G C A
p-value:1e-23
log p-value:-5.427e+01
Information Content per bp:1.637
Number of Target Sequences with motif454.0
Percentage of Target Sequences with motif62.53%
Number of Background Sequences with motif21330.4
Percentage of Background Sequences with motif43.79%
Average Position of motif in Targets433.1 +/- 263.4bp
Average Position of motif in Background412.0 +/- 256.9bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.60
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:1
Score:0.96
Offset:3
Orientation:forward strand
Alignment:TBNYTGCCAR-
---TTGCCAAG
 A C G T A G C T A T C G A G T C C G A T A T C G A T G C A G T C C G T A T C A G A C G T
A C G T A C G T A C G T A G C T A C G T A C T G A T G C A G T C C G T A C T G A T A C G

HIC1(Zf)/Treg-ZBTB29-ChIP-Seq(GSE99889)/Homer

Match Rank:2
Score:0.90
Offset:4
Orientation:forward strand
Alignment:TBNYTGCCAR--
----TGCCAGCB
 A C G T A G C T A T C G A G T C C G A T A T C G A T G C A G T C C G T A T C A G A C G T A C G T
A C G T A C G T A C G T A C G T G A C T C T A G A T G C A G T C G T C A T A C G A T G C A T C G

NFIX/MA0671.1/Jaspar

Match Rank:3
Score:0.88
Offset:2
Orientation:forward strand
Alignment:TBNYTGCCAR-
--CGTGCCAAG
 A C G T A G C T A T C G A G T C C G A T A T C G A T G C A G T C C G T A T C A G A C G T
A C G T A C G T T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G

NFIA/MA0670.1/Jaspar

Match Rank:4
Score:0.85
Offset:2
Orientation:forward strand
Alignment:TBNYTGCCAR--
--GGTGCCAAGT
 A C G T A G C T A T C G A G T C C G A T A T C G A T G C A G T C C G T A T C A G A C G T A C G T
A C G T A C G T T C A G C A T G A C G T A C T G A G T C A G T C C G T A C G T A T C A G C G A T

Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer

Match Rank:5
Score:0.81
Offset:4
Orientation:forward strand
Alignment:TBNYTGCCAR--
----TGTCANYT
 A C G T A G C T A T C G A G T C C G A T A T C G A T G C A G T C C G T A T C A G A C G T A C G T
A C G T A C G T A C G T A C G T A G C T C A T G G C A T G A T C T G C A C T A G G A T C A C G T

Hic1/MA0739.1/Jaspar

Match Rank:6
Score:0.80
Offset:3
Orientation:forward strand
Alignment:TBNYTGCCAR--
---ATGCCAACC
 A C G T A G C T A T C G A G T C C G A T A T C G A T G C A G T C C G T A T C A G A C G T A C G T
A C G T A C G T A C G T T C G A A G C T T C A G T A G C G T A C G T C A T C G A A T G C A G T C

NFIC/MA0161.2/Jaspar

Match Rank:7
Score:0.79
Offset:2
Orientation:reverse strand
Alignment:TBNYTGCCAR---
--NNTGCCAAGNN
 A C G T A G C T A T C G A G T C C G A T A T C G A T G C A G T C C G T A T C A G A C G T A C G T A C G T
A C G T A C G T G C A T T A G C G C A T C T A G G T A C A G T C C G T A T G C A A C T G C G A T C T G A

Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer

Match Rank:8
Score:0.79
Offset:2
Orientation:reverse strand
Alignment:TBNYTGCCAR
--RHTGWCAR
 A C G T A G C T A T C G A G T C C G A T A T C G A T G C A G T C C G T A T C A G
A C G T A C G T C T A G G T A C A G C T C T A G G C T A G A T C C G T A C T G A

Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer

Match Rank:9
Score:0.79
Offset:2
Orientation:reverse strand
Alignment:TBNYTGCCAR--
--VBTGWCAGCB
 A C G T A G C T A T C G A G T C C G A T A T C G A T G C A G T C C G T A T C A G A C G T A C G T
A C G T A C G T T C A G A T G C A C G T A C T G C G T A A G T C C G T A A T C G A T G C A G T C

MEIS2/MA0774.1/Jaspar

Match Rank:10
Score:0.75
Offset:3
Orientation:forward strand
Alignment:TBNYTGCCAR-
---TTGACAGC
 A C G T A G C T A T C G A G T C C G A T A T C G A T G C A G T C C G T A T C A G A C G T
A C G T A C G T A C G T C G A T C A G T A C T G C G T A G T A C T G C A T A C G T A G C