Information for 4-GCAGATTG (Motif 6)

A C T G A G T C C G T A A T C G G T C A C A G T A C G T A C T G
Reverse Opposite:
A G T C G T C A G T C A A C G T A T G C G C A T C T A G A G T C
p-value:1e-19
log p-value:-4.410e+01
Information Content per bp:1.818
Number of Target Sequences with motif292.0
Percentage of Target Sequences with motif40.22%
Number of Background Sequences with motif12106.7
Percentage of Background Sequences with motif24.86%
Average Position of motif in Targets480.9 +/- 303.7bp
Average Position of motif in Background411.3 +/- 259.1bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.22
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NEUROD1/MA1109.1/Jaspar

Match Rank:1
Score:0.76
Offset:-2
Orientation:forward strand
Alignment:--GCAGATTG---
GGACAGATGGCAG
 A C G T A C G T A C T G A G T C C G T A A T C G G T C A C A G T A C G T A C T G A C G T A C G T A C G T
C A T G T C A G T C G A T G A C C G T A A C T G T G C A G C A T C A T G A C T G A G T C T C G A T A C G

NEUROG2(var.2)/MA1642.1/Jaspar

Match Rank:2
Score:0.76
Offset:-3
Orientation:forward strand
Alignment:---GCAGATTG--
GGAACAGATGGCA
 A C G T A C G T A C G T A C T G A G T C C G T A A T C G G T C A C A G T A C G T A C T G A C G T A C G T
C T A G C T A G T C G A T G C A T A G C T C G A A C T G T G C A G A C T C A T G A C T G A G T C T G C A

NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer

Match Rank:3
Score:0.75
Offset:-1
Orientation:reverse strand
Alignment:-GCAGATTG-
AACAGATGGC
 A C G T A C T G A G T C C G T A A T C G G T C A C A G T A C G T A C T G A C G T
C T G A T C G A A G T C G T C A A C T G T G C A G C A T A C T G A C T G A G T C

NeuroG2(bHLH)/Fibroblast-NeuroG2-ChIP-Seq(GSE75910)/Homer

Match Rank:4
Score:0.73
Offset:-1
Orientation:reverse strand
Alignment:-GCAGATTG-
AACAGATGGT
 A C G T A C T G A G T C C G T A A T C G G T C A C A G T A C G T A C T G A C G T
T C G A T C G A A G T C C G T A A C T G G T C A G C A T A C T G A C T G A G C T

Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer

Match Rank:5
Score:0.71
Offset:-1
Orientation:reverse strand
Alignment:-GCAGATTG-
AACAKATGGY
 A C G T A C T G A G T C C G T A A T C G G T C A C A G T A C G T A C T G A C G T
C T G A T G C A A G T C T C G A A C T G T G C A G C A T A C T G A C T G G A C T

HAND2/MA1638.1/Jaspar

Match Rank:6
Score:0.70
Offset:-1
Orientation:forward strand
Alignment:-GCAGATTG-
ACCAGATGGC
 A C G T A C T G A G T C C G T A A T C G G T C A C A G T A C G T A C T G A C G T
C T G A T G A C A T G C T C G A A C T G T C G A A G C T T C A G A C T G G A T C

PB0193.1_Tcfe2a_2/Jaspar

Match Rank:7
Score:0.68
Offset:-4
Orientation:forward strand
Alignment:----GCAGATTG-----
AAGGCCAGATGGTCCGG
 A C G T A C G T A C G T A C G T A C T G A G T C C G T A A T C G G T C A C A G T A C G T A C T G A C G T A C G T A C G T A C G T A C G T
G C T A T C G A C T A G C A T G T A G C G T A C C T G A A C T G T C G A C G A T A C T G C A T G A G C T G A T C A T G C A T C G T C A G

ZNF317/MA1593.1/Jaspar

Match Rank:8
Score:0.67
Offset:-5
Orientation:forward strand
Alignment:-----GCAGATTG
TAACAGCAGACT-
 A C G T A C G T A C G T A C G T A C G T A C T G A G T C C G T A A T C G G T C A C A G T A C G T A C T G
C G A T T C G A C G T A T G A C C G T A C T A G G T A C C G T A C T A G G C T A G A T C G C A T A C G T

TCF4(bHLH)/SHSY5Y-TCF4-ChIP-Seq(GSE96915)/Homer

Match Rank:9
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-GCAGATTG-
DMCAGATGKS
 A C G T A C T G A G T C C G T A A T C G G T C A C A G T A C G T A C T G A C G T
C G T A T G A C A G T C C G T A A C T G G T C A A C G T A C T G A C G T A T G C

SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer

Match Rank:10
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-GCAGATTG
ANCAGCTG-
 A C G T A C T G A G T C C G T A A T C G G T C A C A G T A C G T A C T G
C T G A T C A G G T A C G C T A A C T G T G A C G C A T C A T G A C G T