Information for 6-CCATGGAAAC (Motif 9)

A T G C A G T C T C G A G A C T C T A G A T C G T G C A T C G A C T G A A G T C
Reverse Opposite:
T C A G G A C T A G C T A C G T A T G C A G T C C T G A A G C T T C A G A T C G
p-value:1e-16
log p-value:-3.906e+01
Information Content per bp:1.715
Number of Target Sequences with motif158.0
Percentage of Target Sequences with motif21.76%
Number of Background Sequences with motif5256.2
Percentage of Background Sequences with motif10.79%
Average Position of motif in Targets430.1 +/- 242.2bp
Average Position of motif in Background418.5 +/- 250.4bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.18
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RFX3/MA0798.2/Jaspar

Match Rank:1
Score:0.85
Offset:-2
Orientation:reverse strand
Alignment:--CCATGGAAAC--
TNCCATAGCAACNN
 A C G T A C G T A T G C A G T C T C G A G A C T C T A G A T C G T G C A T C G A C T G A A G T C A C G T A C G T
G A C T C A T G A G T C G A T C G T C A A G C T C T G A C T A G G A T C C T G A T C G A G A T C T G A C T C A G

Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:2
Score:0.83
Offset:-3
Orientation:reverse strand
Alignment:---CCATGGAAAC-
TTGCCATGGCAACN
 A C G T A C G T A C G T A T G C A G T C T C G A G A C T C T A G A T C G T G C A T C G A C T G A A G T C A C G T
A G C T G A C T C A T G A G T C A G T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A A G T C T G A C

X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:3
Score:0.83
Offset:-3
Orientation:reverse strand
Alignment:---CCATGGAAAC-
TTGCCATGGCAACC
 A C G T A C G T A C G T A T G C A G T C T C G A G A C T C T A G A T C G T G C A T C G A C T G A A G T C A C G T
A G C T G A C T C A T G A G T C G A T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A G A T C G T A C

RFX1/MA0509.2/Jaspar

Match Rank:4
Score:0.82
Offset:-2
Orientation:reverse strand
Alignment:--CCATGGAAAC--
TNCCATAGCAACNN
 A C G T A C G T A T G C A G T C T C G A G A C T C T A G A T C G T G C A T C G A C T G A A G T C A C G T A C G T
G A C T C A T G A G T C G A T C G T C A G A C T T C G A C T A G G A T C C T G A T C G A G A T C G T C A T C A G

Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer

Match Rank:5
Score:0.78
Offset:-5
Orientation:reverse strand
Alignment:-----CCATGGAAAC
KGTTGCCATGGCAAC
 A C G T A C G T A C G T A C G T A C G T A T G C A G T C T C G A G A C T C T A G A T C G T G C A T C G A C T G A A G T C
A C T G C T A G A G C T G A C T C A T G A G T C A G T C G T C A C A G T C T A G T C A G G T A C C T G A T C G A G A T C

RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer

Match Rank:6
Score:0.76
Offset:-4
Orientation:reverse strand
Alignment:----CCATGGAAAC--
GTTGCCATGGCAACCG
 A C G T A C G T A C G T A C G T A T G C A G T C T C G A G A C T C T A G A T C G T G C A T C G A C T G A A G T C A C G T A C G T
C T A G A G C T G A C T C T A G A G T C A G T C G T C A C G A T T C A G T C A G G A T C C T G A T C G A G A T C T A G C T C A G

RFX2/MA0600.2/Jaspar

Match Rank:7
Score:0.76
Offset:-5
Orientation:forward strand
Alignment:-----CCATGGAAAC-
CGTTGCCATGGCAACG
 A C G T A C G T A C G T A C G T A C G T A T G C A G T C T C G A G A C T C T A G A T C G T G C A T C G A C T G A A G T C A C G T
A T G C T C A G G A C T G C A T C T A G A G T C A G T C C G T A G C A T T C A G T C A G G A T C C G T A C T G A G A T C T A C G

RFX5/MA0510.2/Jaspar

Match Rank:8
Score:0.75
Offset:-5
Orientation:reverse strand
Alignment:-----CCATGGAAAC-
NGTTGCCATGGCAACG
 A C G T A C G T A C G T A C G T A C G T A T G C A G T C T C G A G A C T C T A G A T C G T G C A T C G A C T G A A G T C A C G T
A T G C C T A G A C G T G A C T C T A G A G T C A G T C C G T A G C A T T C A G T C A G G A T C C T G A T C G A G A T C T A C G

Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer

Match Rank:9
Score:0.75
Offset:0
Orientation:forward strand
Alignment:CCATGGAAAC--
SCCTAGCAACAG
 A T G C A G T C T C G A G A C T C T A G A T C G T G C A T C G A C T G A A G T C A C G T A C G T
A T G C A G T C G T A C A G C T T C G A C T A G G A T C C T G A G T C A A G T C G C T A T C A G

RFX4/MA0799.1/Jaspar

Match Rank:10
Score:0.75
Offset:-5
Orientation:forward strand
Alignment:-----CCATGGAAAC-
CGTTGCCATGGCAACG
 A C G T A C G T A C G T A C G T A C G T A T G C A G T C T C G A G A C T C T A G A T C G T G C A T C G A C T G A A G T C A C G T
A T G C C T A G G C A T G C A T C T A G A G T C A G T C C G T A G C A T T C A G T C A G G A T C C G T A T C G A G A T C T A C G