Motif Name	Consensus	P-value	Log P-value	q-value (Benjamini)	# of Target Sequences with Motif(of 726)	% of Target Sequences with Motif	# of Background Sequences with Motif(of 48686)	% of Background Sequences with Motif
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	GATGASTCATCN	1e-50	-1.167e+02	0.0000	194.0	26.72%	3880.3	7.97%
Fra2(bZIP)/Striatum-Fra2-ChIP-Seq(GSE43429)/Homer	GGATGACTCATC	1e-48	-1.115e+02	0.0000	277.0	38.15%	7588.9	15.58%
Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer	NATGASTCABNN	1e-47	-1.082e+02	0.0000	224.0	30.85%	5331.7	10.95%
Fos(bZIP)/TSC-Fos-ChIP-Seq(GSE110950)/Homer	NDATGASTCAYN	1e-43	-1.013e+02	0.0000	305.0	42.01%	9396.8	19.29%
Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer	NNATGASTCATH	1e-41	-9.664e+01	0.0000	294.0	40.50%	9052.6	18.59%
JunB(bZIP)/DendriticCells-Junb-ChIP-Seq(GSE36099)/Homer	RATGASTCAT	1e-37	-8.561e+01	0.0000	285.0	39.26%	9121.1	18.73%
Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	DATGASTCATHN	1e-35	-8.221e+01	0.0000	313.0	43.11%	10773.3	22.12%
BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	DATGASTCAT	1e-33	-7.783e+01	0.0000	311.0	42.84%	10909.3	22.40%
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1e-31	-7.184e+01	0.0000	326.0	44.90%	12096.7	24.84%
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1e-18	-4.238e+01	0.0000	120.0	16.53%	3319.9	6.82%
Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer	GTTGCCATGGCAACM	1e-18	-4.164e+01	0.0000	74.0	10.19%	1498.2	3.08%
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer	YTGCCAAG	1e-16	-3.904e+01	0.0000	496.0	68.32%	25695.4	52.76%
RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer	CGGTTGCCATGGCAAC	1e-16	-3.827e+01	0.0000	66.0	9.09%	1306.8	2.68%
Mef2b(MADS)/HEK293-Mef2b.V5-ChIP-Seq(GSE67450)/Homer	GCTATTTTTGGM	1e-16	-3.708e+01	0.0000	298.0	41.05%	13062.0	26.82%
X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	GGTTGCCATGGCAA	1e-12	-2.890e+01	0.0000	73.0	10.06%	1884.0	3.87%
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1e-12	-2.850e+01	0.0000	183.0	25.21%	7279.3	14.95%
Mef2d(MADS)/Retina-Mef2d-ChIP-Seq(GSE61391)/Homer	GCTATTTTTAGC	1e-11	-2.722e+01	0.0000	97.0	13.36%	3014.8	6.19%
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer	CYAAAAATAG	1e-10	-2.462e+01	0.0000	167.0	23.00%	6738.9	13.84%
Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	KGTTGCCATGGCAA	1e-10	-2.438e+01	0.0000	105.0	14.46%	3557.6	7.30%
Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer	TGCGTGGGYG	1e-9	-2.141e+01	0.0000	222.0	30.58%	10161.6	20.86%
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1e-8	-2.062e+01	0.0000	41.0	5.65%	917.7	1.88%
NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	GATGACTCAGCA	1e-8	-2.044e+01	0.0000	43.0	5.92%	1000.0	2.05%
Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer	NGCGTGGGCGGR	1e-8	-2.039e+01	0.0000	70.0	9.64%	2142.1	4.40%
WT1(Zf)/Kidney-WT1-ChIP-Seq(GSE90016)/Homer	MCTCCCMCRCAB	1e-8	-1.941e+01	0.0000	212.0	29.20%	9803.7	20.13%
NFIL3(bZIP)/HepG2-NFIL3-ChIP-Seq(Encode)/Homer	VTTACGTAAYNNNNN	1e-7	-1.745e+01	0.0000	196.0	27.00%	9099.9	18.68%
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer	VNRVCAGCTGGY	1e-6	-1.536e+01	0.0000	344.0	47.38%	18554.3	38.09%
Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	TATGCWAATBAV	1e-6	-1.516e+01	0.0000	116.0	15.98%	4835.5	9.93%
Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer	WATGCAAATGAG	1e-6	-1.492e+01	0.0000	150.0	20.66%	6747.3	13.85%
NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer	CYTGGCABNSTGCCAR	1e-5	-1.291e+01	0.0000	139.0	19.15%	6358.9	13.06%
Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer	VCAGCTGYTG	1e-5	-1.252e+01	0.0001	287.0	39.53%	15383.6	31.58%
Dlx3(Homeobox)/Kerainocytes-Dlx3-ChIP-Seq(GSE89884)/Homer	NDGTAATTAC	1e-5	-1.203e+01	0.0001	204.0	28.10%	10311.3	21.17%
TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer	YCWGGAATGY	1e-5	-1.198e+01	0.0001	215.0	29.61%	10988.5	22.56%
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1e-5	-1.183e+01	0.0001	31.0	4.27%	848.8	1.74%
MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	RRCAGCTGYTSY	1e-5	-1.164e+01	0.0001	245.0	33.75%	12896.9	26.48%
Brachyury(T-box)/Mesoendoderm-Brachyury-ChIP-exo(GSE54963)/Homer	ANTTMRCASBNNNGTGYKAAN	1e-5	-1.161e+01	0.0001	116.0	15.98%	5211.6	10.70%
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	CTGGCAGSCTGCCA	1e-4	-1.121e+01	0.0002	158.0	21.76%	7682.1	15.77%
DLX5(Homeobox)/BasalGanglia-Dlx5-ChIP-seq(GSE124936)/Homer	SSTAATTA	1e-4	-1.112e+01	0.0002	233.0	32.09%	12239.5	25.13%
HIC1(Zf)/Treg-ZBTB29-ChIP-Seq(GSE99889)/Homer	TGCCAGCB	1e-4	-1.078e+01	0.0002	482.0	66.39%	28696.7	58.92%
NFAT:AP1(RHD,bZIP)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	SARTGGAAAAWRTGAGTCAB	1e-4	-1.059e+01	0.0003	71.0	9.78%	2864.4	5.88%
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1e-4	-1.030e+01	0.0004	420.0	57.85%	24548.3	50.40%
DLX1(Homeobox)/BasalGanglia-Dlx1-ChIP-seq(GSE124936)/Homer	NSNNTAATTA	1e-4	-9.532e+00	0.0008	351.0	48.35%	20112.3	41.29%
Rfx6(HTH)/Min6b1-Rfx6.HA-ChIP-Seq(GSE62844)/Homer	TGTTKCCTAGCAACM	1e-4	-9.276e+00	0.0010	348.0	47.93%	19971.9	41.00%
DLX2(Homeobox)/BasalGanglia-Dlx2-ChIP-seq(GSE124936)/Homer	NNNTAATTAS	1e-3	-9.133e+00	0.0011	384.0	52.89%	22389.5	45.97%
NeuroG2(bHLH)/Fibroblast-NeuroG2-ChIP-Seq(GSE75910)/Homer	ACCATCTGTT	1e-3	-8.852e+00	0.0014	433.0	59.64%	25755.1	52.88%
Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAW	1e-3	-8.812e+00	0.0015	149.0	20.52%	7513.5	15.43%
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1e-3	-8.587e+00	0.0018	274.0	37.74%	15318.6	31.45%
Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer	CCTGCTGAGH	1e-3	-8.389e+00	0.0021	255.0	35.12%	14148.1	29.05%
PGR(NR)/EndoStromal-PGR-ChIP-Seq(GSE69539)/Homer	AAGAACATWHTGTTC	1e-3	-8.257e+00	0.0024	98.0	13.50%	4610.7	9.47%
En1(Homeobox)/SUM149-EN1-ChIP-Seq(GSE120957)/Homer	NDCTAATTAS	1e-3	-8.183e+00	0.0025	436.0	60.06%	26119.8	53.63%
MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer	GCTGASTCAGCA	1e-3	-7.619e+00	0.0043	94.0	12.95%	4468.4	9.17%
TEAD3(TEA)/HepG2-TEAD3-ChIP-Seq(Encode)/Homer	TRCATTCCAG	1e-3	-7.552e+00	0.0045	322.0	44.35%	18667.6	38.33%
HLF(bZIP)/HSC-HLF.Flag-ChIP-Seq(GSE69817)/Homer	RTTATGYAAB	1e-3	-7.539e+00	0.0045	220.0	30.30%	12117.0	24.88%
STAT6(Stat)/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer	TTCCKNAGAA	1e-3	-7.328e+00	0.0055	178.0	24.52%	9543.7	19.59%
Tbr1(T-box)/Cortex-Tbr1-ChIP-Seq(GSE71384)/Homer	AAGGTGTKAA	1e-3	-7.252e+00	0.0058	366.0	50.41%	21646.8	44.44%
TEAD1(TEAD)/HepG2-TEAD1-ChIP-Seq(Encode)/Homer	CYRCATTCCA	1e-3	-7.161e+00	0.0062	277.0	38.15%	15838.2	32.52%
Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer	NAACAGCTGG	1e-3	-6.916e+00	0.0078	280.0	38.57%	16092.8	33.04%
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1e-2	-6.678e+00	0.0097	215.0	29.61%	11994.2	24.63%
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1e-2	-6.658e+00	0.0097	493.0	67.91%	30427.9	62.47%
HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer	TTCTAGAABNTTCTA	1e-2	-6.502e+00	0.0112	91.0	12.53%	4457.8	9.15%
Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer	NNVVCAGCTGBN	1e-2	-6.351e+00	0.0128	392.0	53.99%	23626.9	48.51%
Oct11(POU,Homeobox)/NCIH1048-POU2F3-ChIP-seq(GSE115123)/Homer	GATTTGCATA	1e-2	-6.261e+00	0.0138	106.0	14.60%	5378.3	11.04%
MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1e-2	-6.183e+00	0.0146	294.0	40.50%	17191.3	35.30%
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer	CCWGGAATGY	1e-2	-6.011e+00	0.0171	246.0	33.88%	14132.6	29.02%
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer	TAATTAGN	1e-2	-5.921e+00	0.0184	289.0	39.81%	16937.2	34.77%
HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer	BSTTCTRGAABVTTCYAGAA	1e-2	-5.792e+00	0.0207	63.0	8.68%	2950.1	6.06%
BHLHA15(bHLH)/NIH3T3-BHLHB8.HA-ChIP-Seq(GSE119782)/Homer	NAMCAGCTGK	1e-2	-5.769e+00	0.0208	397.0	54.68%	24130.2	49.54%
GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer	VAGRACAKWCTGTYC	1e-2	-5.749e+00	0.0209	94.0	12.95%	4754.0	9.76%
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	MTGATGCAAT	1e-2	-5.681e+00	0.0221	79.0	10.88%	3885.8	7.98%
Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer	YCTTTGTTCC	1e-2	-5.468e+00	0.0269	252.0	34.71%	14664.2	30.11%
GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer	NRGVACABNVTGTYCY	1e-2	-5.399e+00	0.0284	60.0	8.26%	2833.9	5.82%
NFE2L2(bZIP)/HepG2-NFE2L2-ChIP-Seq(Encode)/Homer	AWWWTGCTGAGTCAT	1e-2	-5.293e+00	0.0311	29.0	3.99%	1150.8	2.36%
STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer	NYTTCCWGGAAR	1e-2	-5.197e+00	0.0338	268.0	36.91%	15777.3	32.39%
CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan_et_al.)/Homer	CCATATATGGNM	1e-2	-5.102e+00	0.0367	98.0	13.50%	5108.1	10.49%
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1e-2	-5.090e+00	0.0367	539.0	74.24%	34078.8	69.97%
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	GCTGTGGTTW	1e-2	-4.907e+00	0.0434	232.0	31.96%	13534.3	27.79%
Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer	ATTAACACCT	1e-2	-4.848e+00	0.0454	484.0	66.67%	30335.6	62.28%
Six4(Homeobox)/MCF7-SIX4-ChIP-Seq(Encode)/Homer	TGWAAYCTGABACCB	1e-2	-4.763e+00	0.0488	22.0	3.03%	836.8	1.72%
Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1e-2	-4.712e+00	0.0507	343.0	47.25%	20855.9	42.82%
TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer	CCWGGAATGY	1e-1	-4.560e+00	0.0583	160.0	22.04%	9048.6	18.58%
Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer	CCWTTGTYYB	1e-1	-4.554e+00	0.0583	413.0	56.89%	25595.8	52.55%
OCT:OCT(POU,Homeobox,IR1)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATWATTCATGA	1e-1	-4.508e+00	0.0599	8.0	1.10%	199.5	0.41%
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer	BCCATTGTTC	1e-1	-4.446e+00	0.0629	254.0	34.99%	15096.3	30.99%
Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer	GKVTCADRTTWC	1e-1	-4.378e+00	0.0666	79.0	10.88%	4106.9	8.43%
Tbx21(T-box)/GM12878-TBX21-ChIP-Seq(Encode)/Homer	AGGTGTGAAA	1e-1	-4.287e+00	0.0720	271.0	37.33%	16255.9	33.38%
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	1e-1	-4.227e+00	0.0756	426.0	58.68%	26588.2	54.59%
Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGCATAATTCA	1e-1	-4.212e+00	0.0758	100.0	13.77%	5409.4	11.11%
Tbx6(T-box)/ESC-Tbx6-ChIP-Seq(GSE93524)/Homer	DAGGTGTBAA	1e-1	-4.117e+00	0.0824	284.0	39.12%	17163.0	35.24%
Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATATTC	1e-1	-4.060e+00	0.0863	34.0	4.68%	1544.8	3.17%
TCF4(bHLH)/SHSY5Y-TCF4-ChIP-Seq(GSE96915)/Homer	SMCATCTGKH	1e-1	-4.051e+00	0.0863	421.0	57.99%	26313.3	54.02%
GATA(Zf),IR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NAGATWNBNATCTNN	1e-1	-4.048e+00	0.0863	27.0	3.72%	1162.0	2.39%
Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer	ATATGCAAAT	1e-1	-4.010e+00	0.0877	89.0	12.26%	4782.9	9.82%
RORg(NR)/Liver-Rorc-ChIP-Seq(GSE101115)/Homer	WAABTAGGTCAV	1e-1	-4.005e+00	0.0877	33.0	4.55%	1495.1	3.07%
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1e-1	-3.959e+00	0.0903	134.0	18.46%	7575.0	15.55%
Zic2(Zf)/ESC-Zic2-ChIP-Seq(SRP197560)/Homer	CHCAGCRGGRGG	1e-1	-3.893e+00	0.0954	132.0	18.18%	7466.1	15.33%
KLF14(Zf)/HEK293-KLF14.GFP-ChIP-Seq(GSE58341)/Homer	RGKGGGCGKGGC	1e-1	-3.868e+00	0.0968	372.0	51.24%	23085.5	47.40%
LHX9(Homeobox)/Hct116-LHX9.V5-ChIP-Seq(GSE116822)/Homer	NGCTAATTAG	1e-1	-3.808e+00	0.1017	351.0	48.35%	21705.7	44.56%
Sp5(Zf)/mES-Sp5.Flag-ChIP-Seq(GSE72989)/Homer	RGKGGGCGGAGC	1e-1	-3.634e+00	0.1199	227.0	31.27%	13612.7	27.95%
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	ATTTTCCATT	1e-1	-3.618e+00	0.1205	237.0	32.64%	14267.1	29.29%
Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer	CCATTGTATGCAAAT	1e-1	-3.600e+00	0.1214	48.0	6.61%	2408.0	4.94%
ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer	AGGAARCAGCTG	1e-1	-3.544e+00	0.1272	37.0	5.10%	1780.2	3.65%
ZNF669(Zf)/HEK293-ZNF669.GFP-ChIP-Seq(GSE58341)/Homer	GARTGGTCATCGCCC	1e-1	-3.482e+00	0.1339	24.0	3.31%	1059.9	2.18%
FOXK2(Forkhead)/U2OS-FOXK2-ChIP-Seq(E-MTAB-2204)/Homer	SCHTGTTTACAT	1e-1	-3.459e+00	0.1358	190.0	26.17%	11281.6	23.16%
Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer	RAACAATGGN	1e-1	-3.420e+00	0.1397	292.0	40.22%	17943.5	36.84%
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1e-1	-3.380e+00	0.1440	411.0	56.61%	25896.8	53.17%
Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	CACAGCAGGGGG	1e-1	-3.370e+00	0.1442	173.0	23.83%	10219.1	20.98%
STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer	RTTTCTNAGAAA	1e-1	-3.349e+00	0.1458	106.0	14.60%	5985.2	12.29%
ZNF341(Zf)/EBV-ZNF341-ChIP-Seq(GSE113194)/Homer	GGAACAGCCG	1e-1	-3.348e+00	0.1458	233.0	32.09%	14104.1	28.96%
CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	NTNATGCAAYMNNHTGMAAY	1e-1	-3.317e+00	0.1477	44.0	6.06%	2221.0	4.56%
Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer	TBGCACGCAA	1e-1	-3.280e+00	0.1519	175.0	24.10%	10377.3	21.31%
Lhx1(Homeobox)/EmbryoCarcinoma-Lhx1-ChIP-Seq(GSE70957)/Homer	NNYTAATTAR	1e-1	-3.267e+00	0.1525	285.0	39.26%	17542.2	36.02%
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer	NRAACCRGTTYRAACCRGYT	1e-1	-3.260e+00	0.1525	54.0	7.44%	2822.8	5.80%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e-1	-3.228e+00	0.1543	43.0	5.92%	2176.1	4.47%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e-1	-3.228e+00	0.1543	43.0	5.92%	2176.1	4.47%
Sox7(HMG)/ESC-Sox7-ChIP-Seq(GSE133899)/Homer	VVRRAACAATGG	1e-1	-3.154e+00	0.1647	95.0	13.09%	5351.0	10.99%
OCT:OCT-short(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	ATGCATWATGCATRW	1e-1	-3.136e+00	0.1662	179.0	24.66%	10683.6	21.93%
Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer	RTCACSCCAY	1e-1	-3.118e+00	0.1679	63.0	8.68%	3392.2	6.96%
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1e-1	-3.107e+00	0.1682	76.0	10.47%	4188.2	8.60%
Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer	AGGTGTGAAM	1e-1	-3.103e+00	0.1682	271.0	37.33%	16686.7	34.26%
Sox21(HMG)/ESC-SOX21-ChIP-Seq(GSE110505)/Homer	BCCWTTGTBYKV	1e-1	-3.097e+00	0.1682	437.0	60.19%	27772.6	57.02%
EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer	DGTCCCYRGGGA	1e-1	-3.081e+00	0.1683	67.0	9.23%	3643.3	7.48%
p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer	NNDRCATGYCYNRRCATGYH	1e-1	-3.076e+00	0.1683	117.0	16.12%	6750.9	13.86%
AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	TGGCAGTTGG	1e-1	-2.973e+00	0.1845	395.0	54.41%	24992.0	51.31%
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1e-1	-2.964e+00	0.1846	27.0	3.72%	1289.3	2.65%
Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer	CVGTSCTCCC	1e-1	-2.897e+00	0.1959	437.0	60.19%	27859.7	57.20%
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1e-1	-2.886e+00	0.1964	193.0	26.58%	11678.3	23.98%
ZNF519(Zf)/HEK293-ZNF519.GFP-ChIP-Seq(GSE58341)/Homer	GAGSCCGAGC	1e-1	-2.876e+00	0.1968	54.0	7.44%	2897.9	5.95%
PRDM15(Zf)/ESC-Prdm15-ChIP-Seq(GSE73694)/Homer	YCCDNTCCAGGTTTT	1e-1	-2.817e+00	0.2072	287.0	39.53%	17861.7	36.67%
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	1e-1	-2.783e+00	0.2126	342.0	47.11%	21527.4	44.20%
Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer	NNNCTTTCCAGGAAA	1e-1	-2.725e+00	0.2236	359.0	49.45%	22689.4	46.58%
CEBP(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1e-1	-2.674e+00	0.2334	158.0	21.76%	9496.9	19.50%
RBPJ:Ebox(?,bHLH)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	GGGRAARRGRMCAGMTG	1e-1	-2.663e+00	0.2341	105.0	14.46%	6116.5	12.56%
MafB(bZIP)/BMM-Mafb-ChIP-Seq(GSE75722)/Homer	WNTGCTGASTCAGCANWTTY	1e-1	-2.605e+00	0.2463	144.0	19.83%	8621.1	17.70%
Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer	SSCMATWAAA	1e-1	-2.584e+00	0.2497	182.0	25.07%	11082.3	22.75%
Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer	CTTCCGGGAA	1e-1	-2.573e+00	0.2505	146.0	20.11%	8761.4	17.99%
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	1e-1	-2.522e+00	0.2618	98.0	13.50%	5717.2	11.74%
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1e-1	-2.506e+00	0.2639	59.0	8.13%	3284.6	6.74%
STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer	ABTTCYYRRGAA	1e-1	-2.498e+00	0.2641	156.0	21.49%	9433.6	19.37%
EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	AVCAGGAAGT	1e-1	-2.478e+00	0.2674	348.0	47.93%	22071.8	45.32%
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCAT	1e-1	-2.465e+00	0.2690	56.0	7.71%	3109.2	6.38%
RORa(NR)/Liver-Rora-ChIP-Seq(GSE101115)/Homer	AAWCTAGGTCARDNN	1e-1	-2.448e+00	0.2719	46.0	6.34%	2501.7	5.14%
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1e-1	-2.413e+00	0.2796	238.0	32.78%	14813.5	30.41%
CHR(?)/Hela-CellCycle-Expression/Homer	SRGTTTCAAA	1e-1	-2.408e+00	0.2796	166.0	22.87%	10115.5	20.77%
Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer	CCATTGTTYB	1e-1	-2.341e+00	0.2961	205.0	28.24%	12682.4	26.04%
Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer	SVYTTCCNGGAARB	1e-1	-2.324e+00	0.2992	203.0	27.96%	12559.0	25.79%
SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	AVCAGCTG	1e0	-2.267e+00	0.3143	678.0	93.39%	44842.4	92.07%
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer	GKTAATGR	1e0	-2.259e+00	0.3147	506.0	69.70%	32851.5	67.45%
LEF1(HMG)/H1-LEF1-ChIP-Seq(GSE64758)/Homer	CCTTTGATST	1e0	-2.259e+00	0.3147	195.0	26.86%	12065.2	24.77%
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1e0	-2.234e+00	0.3185	421.0	57.99%	27097.0	55.63%
ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer	AGTTTCASTTTC	1e0	-2.231e+00	0.3185	18.0	2.48%	872.4	1.79%
Twist2(bHLH)/Myoblast-Twist2.Ty1-ChIP-Seq(GSE127998)/Homer	MCAGCTGBYH	1e0	-2.223e+00	0.3185	443.0	61.02%	28588.3	58.70%
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer	YCATYAATCA	1e0	-2.171e+00	0.3325	241.0	33.20%	15125.3	31.05%
PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1e0	-2.162e+00	0.3332	154.0	21.21%	9438.4	19.38%
OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAACAATG	1e0	-2.144e+00	0.3371	55.0	7.58%	3126.0	6.42%
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1e0	-2.132e+00	0.3387	70.0	9.64%	4068.7	8.35%
Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer	GGCCYCCTGCTGDGH	1e0	-2.091e+00	0.3506	151.0	20.80%	9273.4	19.04%
ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	ACAGGAAGTG	1e0	-2.090e+00	0.3506	399.0	54.96%	25691.1	52.75%
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer	SCTGTCAMTCAN	1e0	-2.085e+00	0.3506	76.0	10.47%	4461.6	9.16%
Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer	AGGTGHCAGACA	1e0	-2.015e+00	0.3714	61.0	8.40%	3536.5	7.26%
PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer	ACCRTGACTAATTNN	1e0	-2.007e+00	0.3718	62.0	8.54%	3601.8	7.40%
Hand2(bHLH)/Mesoderm-Hand2-ChIP-Seq(GSE61475)/Homer	TGACANARRCCAGRC	1e0	-2.004e+00	0.3718	158.0	21.76%	9766.2	20.05%
IRF:BATF(IRF:bZIP)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	CTTTCANTATGACTV	1e0	-1.950e+00	0.3887	38.0	5.23%	2120.2	4.35%
Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer	NNNVCTGWGYAAACASN	1e0	-1.922e+00	0.3975	295.0	40.63%	18831.6	38.66%
ZSCAN22(Zf)/HEK293-ZSCAN22.GFP-ChIP-Seq(GSE58341)/Homer	SMCAGTCWGAKGGAGGAGGC	1e0	-1.907e+00	0.4011	26.0	3.58%	1396.3	2.87%
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	MACAGGAAGT	1e0	-1.884e+00	0.4077	98.0	13.50%	5933.0	12.18%
Etv2(ETS)/ES-ER71-ChIP-Seq(GSE59402)/Homer	NNAYTTCCTGHN	1e0	-1.881e+00	0.4077	259.0	35.67%	16465.2	33.81%
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer	MAATCACTGC	1e0	-1.872e+00	0.4077	181.0	24.93%	11330.8	23.26%
Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer	SCTGTCAVTCAV	1e0	-1.867e+00	0.4077	69.0	9.50%	4086.0	8.39%
PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GTCACGCTCSCTGM	1e0	-1.835e+00	0.4182	31.0	4.27%	1715.7	3.52%
Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer	AGGVNCCTTTGT	1e0	-1.790e+00	0.4345	243.0	33.47%	15456.2	31.73%
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan_et_al.)/Homer	CTGTTTAC	1e0	-1.768e+00	0.4417	441.0	60.74%	28706.7	58.94%
ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer	WDNCTGGGCA	1e0	-1.709e+00	0.4656	362.0	49.86%	23429.7	48.10%
IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	GAAAGTGAAAGT	1e0	-1.707e+00	0.4656	38.0	5.23%	2178.8	4.47%
Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer	TTRAGTGSYK	1e0	-1.689e+00	0.4700	479.0	65.98%	31324.6	64.31%
p73(p53)/Trachea-p73-ChIP-Seq(PRJNA310161)/Homer	NRRRCAWGTCCDGRCATGYY	1e0	-1.684e+00	0.4700	17.0	2.34%	893.0	1.83%
Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer	ASWTCAAAGG	1e0	-1.652e+00	0.4818	79.0	10.88%	4799.8	9.85%
NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WNTGTTTRYTTTGGCA	1e0	-1.641e+00	0.4846	17.0	2.34%	900.9	1.85%
Hoxd13(Homeobox)/ChickenMSG-Hoxd13.Flag-ChIP-Seq(GSE86088)/Homer	NCYAATAAAA	1e0	-1.640e+00	0.4846	376.0	51.79%	24411.9	50.12%
Ascl2(bHLH)/ESC-Ascl2-ChIP-Seq(GSE97712)/Homer	SSRGCAGCTGCH	1e0	-1.601e+00	0.4988	278.0	38.29%	17890.9	36.73%
E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer	DNRCAGCTGY	1e0	-1.585e+00	0.5037	342.0	47.11%	22169.1	45.52%
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer	WGGGGATTTCCC	1e0	-1.566e+00	0.5106	130.0	17.91%	8144.6	16.72%
Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer	CGGTCACSCCAC	1e0	-1.561e+00	0.5106	36.0	4.96%	2090.9	4.29%
EBF2(EBF)/BrownAdipose-EBF2-ChIP-Seq(GSE97114)/Homer	NABTCCCWDGGGAVH	1e0	-1.539e+00	0.5190	252.0	34.71%	16201.8	33.26%
Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGMATATDC	1e0	-1.531e+00	0.5199	267.0	36.78%	17202.3	35.32%
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	1e0	-1.512e+00	0.5272	18.0	2.48%	983.7	2.02%
Foxo3(Forkhead)/U2OS-Foxo3-ChIP-Seq(E-MTAB-2701)/Homer	DGTAAACA	1e0	-1.511e+00	0.5272	198.0	27.27%	12642.7	25.96%
ZNF322(Zf)/HEK293-ZNF322.GFP-ChIP-Seq(GSE58341)/Homer	GAGCCTGGTACTGWGCCTGR	1e0	-1.478e+00	0.5395	85.0	11.71%	5255.9	10.79%
Phox2b(Homeobox)/CLBGA-PHOX2B-ChIP-Seq(GSE90683)/Homer	TTAATTNAATTA	1e0	-1.470e+00	0.5410	51.0	7.02%	3068.7	6.30%
IRF3(IRF)/BMDM-Irf3-ChIP-Seq(GSE67343)/Homer	AGTTTCAKTTTC	1e0	-1.463e+00	0.5421	90.0	12.40%	5586.1	11.47%
ZNF7(Zf)/HepG2-ZNF7.Flag-ChIP-Seq(Encode)/Homer	CTGCCWVCTTTTRTA	1e0	-1.454e+00	0.5437	153.0	21.07%	9709.5	19.93%
IRF8(IRF)/BMDM-IRF8-ChIP-Seq(GSE77884)/Homer	GRAASTGAAAST	1e0	-1.433e+00	0.5523	84.0	11.57%	5209.4	10.70%
CTCF-SatelliteElement(Zf?)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	TGCAGTTCCMVNWRTGGCCA	1e0	-1.427e+00	0.5531	8.0	1.10%	395.3	0.81%
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1e0	-1.421e+00	0.5536	25.0	3.44%	1435.6	2.95%
Pax7(Paired,Homeobox),long/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCHGATTAC	1e0	-1.397e+00	0.5639	7.0	0.96%	340.1	0.70%
E2F3(E2F)/MEF-E2F3-ChIP-Seq(GSE71376)/Homer	BTKGGCGGGAAA	1e0	-1.393e+00	0.5639	111.0	15.29%	6988.0	14.35%
ZNF136(Zf)/HEK293-ZNF136.GFP-ChIP-Seq(GSE58341)/Homer	YTKGATAHAGTATTCTWGGTNGGCA	1e0	-1.385e+00	0.5650	27.0	3.72%	1569.9	3.22%
Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer	TGTCANYT	1e0	-1.342e+00	0.5866	592.0	81.54%	39221.4	80.53%
CREB5(bZIP)/LNCaP-CREB5.V5-ChIP-Seq(GSE137775)/Homer	VVATGACGTCAT	1e0	-1.326e+00	0.5931	96.0	13.22%	6039.9	12.40%
Hoxa11(Homeobox)/ChickenMSG-Hoxa11.Flag-ChIP-Seq(GSE86088)/Homer	TTTTATGGCM	1e0	-1.313e+00	0.5980	489.0	67.36%	32244.4	66.20%
ETS:RUNX(ETS,Runt)/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer	RCAGGATGTGGT	1e0	-1.288e+00	0.6097	26.0	3.58%	1530.7	3.14%
GLIS3(Zf)/Thyroid-Glis3.GFP-ChIP-Seq(GSE103297)/Homer	CTCCCTGGGAGGCCN	1e0	-1.286e+00	0.6097	317.0	43.66%	20704.1	42.51%
Npas4(bHLH)/Neuron-Npas4-ChIP-Seq(GSE127793)/Homer	NHRTCACGACDN	1e0	-1.276e+00	0.6112	176.0	24.24%	11331.8	23.27%
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1e0	-1.248e+00	0.6256	414.0	57.02%	27236.8	55.92%
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1e0	-1.246e+00	0.6256	26.0	3.58%	1541.8	3.17%
Hoxd10(Homeobox)/ChickenMSG-Hoxd10.Flag-ChIP-Seq(GSE86088)/Homer	GGCMATGAAA	1e0	-1.209e+00	0.6436	284.0	39.12%	18557.3	38.10%
EBNA1(EBV-virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	1e0	-1.205e+00	0.6436	6.0	0.83%	303.0	0.62%
BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer	NHAACBGYYV	1e0	-1.198e+00	0.6443	363.0	50.00%	23850.1	48.97%
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	ATTTCCTGTN	1e0	-1.198e+00	0.6443	203.0	27.96%	13172.7	27.05%
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	1e0	-1.179e+00	0.6506	376.0	51.79%	24737.7	50.79%
TFE3(bHLH)/MEF-TFE3-ChIP-Seq(GSE75757)/Homer	GTCACGTGACYV	1e0	-1.176e+00	0.6506	21.0	2.89%	1241.5	2.55%
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	1e0	-1.152e+00	0.6620	200.0	27.55%	13006.0	26.70%
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1e0	-1.148e+00	0.6620	159.0	21.90%	10289.0	21.12%
ZNF675(Zf)/HEK293-ZNF675.GFP-ChIP-Seq(GSE58341)/Homer	ARGAGGMCAAAATGW	1e0	-1.131e+00	0.6695	41.0	5.65%	2540.7	5.22%
FOXK1(Forkhead)/HEK293-FOXK1-ChIP-Seq(GSE51673)/Homer	NVWTGTTTAC	1e0	-1.129e+00	0.6695	268.0	36.91%	17551.6	36.04%
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer	GGCCATAAATCA	1e0	-1.119e+00	0.6714	130.0	17.91%	8387.4	17.22%
Hoxd11(Homeobox)/ChickenMSG-Hoxd11.Flag-ChIP-Seq(GSE86088)/Homer	VGCCATAAAA	1e0	-1.071e+00	0.7009	497.0	68.46%	32963.1	67.68%
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	VACAGGAAAT	1e0	-1.061e+00	0.7053	163.0	22.45%	10612.8	21.79%
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1e0	-1.057e+00	0.7053	61.0	8.40%	3875.9	7.96%
HEB(bHLH)/mES-Heb-ChIP-Seq(GSE53233)/Homer	VCAGCTGBNN	1e0	-1.046e+00	0.7090	418.0	57.58%	27667.0	56.80%
PU.1:IRF8(ETS:IRF)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	GGAAGTGAAAST	1e0	-1.045e+00	0.7090	51.0	7.02%	3225.4	6.62%
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer	NATTTCCNGGAAAT	1e0	-1.007e+00	0.7307	79.0	10.88%	5084.3	10.44%
ZNF768(Zf)/Rajj-ZNF768-ChIP-Seq(GSE111879)/Homer	RHHCAGAGAGGB	1e0	-9.783e-01	0.7485	11.0	1.52%	649.8	1.33%
GFY(?)/Promoter/Homer	ACTACAATTCCC	1e0	-9.763e-01	0.7485	15.0	2.07%	906.1	1.86%
Pitx1:Ebox(Homeobox,bHLH)/Hindlimb-Pitx1-ChIP-Seq(GSE41591)/Homer	YTAATTRAWWCCAGATGT	1e0	-9.426e-01	0.7687	52.0	7.16%	3336.5	6.85%
EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer	GTCCCCWGGGGA	1e0	-9.404e-01	0.7687	255.0	35.12%	16838.7	34.57%
IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	ACTGAAACCA	1e0	-9.162e-01	0.7823	112.0	15.43%	7324.7	15.04%
p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer	RRCATGYCYRGRCATGYYYN	1e0	-8.833e-01	0.8013	31.0	4.27%	1978.5	4.06%
p53(p53)/Saos-p53-ChIP-Seq/Homer	RRCATGYCYRGRCATGYYYN	1e0	-8.833e-01	0.8013	31.0	4.27%	1978.5	4.06%
bZIP:IRF(bZIP,IRF)/Th17-BatF-ChIP-Seq(GSE39756)/Homer	NAGTTTCABTHTGACTNW	1e0	-8.571e-01	0.8190	132.0	18.18%	8697.7	17.86%
Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer	BBCTTATCTS	1e0	-8.517e-01	0.8199	164.0	22.59%	10836.1	22.25%
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	1e0	-8.093e-01	0.8516	139.0	19.15%	9201.9	18.89%
LXRE(NR),DR4/RAW-LXRb.biotin-ChIP-Seq(GSE21512)/Homer	RGGTTACTANAGGTCA	1e0	-7.988e-01	0.8569	14.0	1.93%	886.5	1.82%
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer	ADBTAATTAR	1e0	-7.792e-01	0.8700	365.0	50.28%	24360.3	50.01%
NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer	GGAAATTCCC	1e0	-7.691e-01	0.8751	13.0	1.79%	829.0	1.70%
AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer	SCCTSAGGSCAW	1e0	-7.588e-01	0.8804	225.0	30.99%	14999.3	30.80%
ZNF692(Zf)/HEK293-ZNF692.GFP-ChIP-Seq(GSE58341)/Homer	GTGGGCCCCA	1e0	-7.430e-01	0.8907	29.0	3.99%	1901.1	3.90%
Duxbl(Homeobox)/NIH3T3-Duxbl.HA-ChIP-Seq(GSE119782)/Homer	TAAYCYAATCAA	1e0	-7.411e-01	0.8907	22.0	3.03%	1435.8	2.95%
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1e0	-7.372e-01	0.8907	2.0	0.28%	108.4	0.22%
Tcf7(HMG)/GM12878-TCF7-ChIP-Seq(Encode)/Homer	CTTTGATGTGSB	1e0	-7.267e-01	0.8938	94.0	12.95%	6256.8	12.85%
Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer	SAGATAAGRV	1e0	-7.042e-01	0.9103	145.0	19.97%	9691.5	19.90%
ZNF317(Zf)/HEK293-ZNF317.GFP-ChIP-Seq(GSE58341)/Homer	GTCWGCTGTYYCTCT	1e0	-6.909e-01	0.9188	24.0	3.31%	1588.9	3.26%
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1e0	-6.900e-01	0.9188	648.0	89.26%	43433.7	89.17%
ZNF189(Zf)/HEK293-ZNF189.GFP-ChIP-Seq(GSE58341)/Homer	TGGAACAGMA	1e0	-6.687e-01	0.9316	242.0	33.33%	16232.7	33.33%
FoxD3(forkhead)/ZebrafishEmbryo-Foxd3.biotin-ChIP-seq(GSE106676)/Homer	TGTTTAYTTAGC	1e0	-6.569e-01	0.9387	233.0	32.09%	15641.0	32.11%
Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer	GGGGCTYGKCTGGGA	1e0	-6.566e-01	0.9387	43.0	5.92%	2881.5	5.92%
Zfp57(Zf)/H1-ZFP57.HA-ChIP-Seq(GSE115387)/Homer	NANTGCSGCA	1e0	-6.346e-01	0.9521	55.0	7.58%	3702.2	7.60%
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	1e0	-6.111e-01	0.9708	340.0	46.83%	22874.7	46.96%
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	TGACCTTTNCNT	1e0	-6.003e-01	0.9774	49.0	6.75%	3319.4	6.82%
GATA:SCL(Zf,bHLH)/Ter119-SCL-ChIP-Seq(GSE18720)/Homer	CRGCTGBNGNSNNSAGATAA	1e0	-5.909e-01	0.9826	31.0	4.27%	2106.5	4.32%
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	1e0	-5.773e-01	0.9920	107.0	14.74%	7252.8	14.89%
Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer	BTBRAGTGSN	1e0	-5.701e-01	0.9952	449.0	61.85%	30231.7	62.07%
NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer	GGGGGAATCCCC	1e0	-5.573e-01	1.0000	22.0	3.03%	1510.3	3.10%
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	1e0	-5.521e-01	1.0000	124.0	17.08%	8423.4	17.29%
OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	ATGAATATTCATGAG	1e0	-5.495e-01	1.0000	2.0	0.28%	130.2	0.27%
GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer	CGTGGGTGGTCC	1e0	-5.495e-01	1.0000	31.0	4.27%	2128.0	4.37%
Zfp281(Zf)/ES-Zfp281-ChIP-Seq(GSE81042)/Homer	CCCCTCCCCCAC	1e0	-5.340e-01	1.0000	61.0	8.40%	4178.4	8.58%
Elf4(ETS)/BMDM-Elf4-ChIP-Seq(GSE88699)/Homer	ACTTCCKGKT	1e0	-5.302e-01	1.0000	262.0	36.09%	17741.7	36.43%
Gli2(Zf)/GM2-Gli2-ChIP-Chip(GSE112702)/Homer	YSTGGGTGGTCT	1e0	-5.069e-01	1.0000	69.0	9.50%	4743.3	9.74%
HOXA1(Homeobox)/mES-Hoxa1-ChIP-Seq(SRP084292)/Homer	TGATKGATGR	1e0	-5.033e-01	1.0000	68.0	9.37%	4678.7	9.61%
Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer	YTAATYNRATTA	1e0	-4.982e-01	1.0000	86.0	11.85%	5905.2	12.12%
Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer	NBWGATAAGR	1e0	-4.933e-01	1.0000	238.0	32.78%	16176.5	33.21%
ZNF652/HepG2-ZNF652.Flag-ChIP-Seq(Encode)/Homer	TTAACCCTTTVNKKN	1e0	-4.578e-01	1.0000	62.0	8.54%	4308.4	8.85%
GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer	AAACYKGTTWDACMRGTTTB	1e0	-4.429e-01	1.0000	102.0	14.05%	7048.6	14.47%
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer	ASWTCCTGBT	1e0	-4.403e-01	1.0000	264.0	36.36%	18003.0	36.96%
Foxa3(Forkhead)/Liver-Foxa3-ChIP-Seq(GSE77670)/Homer	BSNTGTTTACWYWGN	1e0	-4.298e-01	1.0000	88.0	12.12%	6109.9	12.54%
ZKSCAN1(Zf)/HepG2-ZKSCAN1-ChIP-Seq(Encode)/Homer	GCACAYAGTAGGKCY	1e0	-4.293e-01	1.0000	8.0	1.10%	589.5	1.21%
E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer	CWGGCGGGAA	1e0	-4.168e-01	1.0000	27.0	3.72%	1931.5	3.97%
ELF3(ETS)/PDAC-ELF3-ChIP-Seq(GSE64557)/Homer	ANCAGGAAGT	1e0	-3.987e-01	1.0000	199.0	27.41%	13681.8	28.09%
FoxL2(Forkhead)/Ovary-FoxL2-ChIP-Seq(GSE60858)/Homer	WWTRTAAACAVG	1e0	-3.876e-01	1.0000	225.0	30.99%	15455.7	31.73%
E-box(bHLH)/Promoter/Homer	SSGGTCACGTGA	1e0	-3.768e-01	1.0000	13.0	1.79%	969.8	1.99%
ZNF382(Zf)/HEK293-ZNF382.GFP-ChIP-Seq(GSE58341)/Homer	GNCTGTASTRNTGBCTCHTT	1e0	-3.751e-01	1.0000	9.0	1.24%	682.1	1.40%
Hoxd12(Homeobox)/ChickenMSG-Hoxd12.Flag-ChIP-Seq(GSE86088)/Homer	HDGYAATGAAAN	1e0	-3.735e-01	1.0000	393.0	54.13%	26773.5	54.97%
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	ATGACGTCATCY	1e0	-3.724e-01	1.0000	68.0	9.37%	4801.3	9.86%
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	ACAGGAAGTG	1e0	-3.675e-01	1.0000	266.0	36.64%	18254.5	37.48%
Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer	ACAGCTGTTN	1e0	-3.591e-01	1.0000	529.0	72.87%	35866.9	73.64%
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer	CTAATKGV	1e0	-3.525e-01	1.0000	416.0	57.30%	28349.7	58.21%
Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer	GCCACACCCA	1e0	-3.424e-01	1.0000	84.0	11.57%	5935.3	12.19%
Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer	AGGTGTCA	1e0	-3.418e-01	1.0000	575.0	79.20%	38940.0	79.95%
Atf2(bZIP)/3T3L1-Atf2-ChIP-Seq(GSE56872)/Homer	NRRTGACGTCAT	1e0	-3.414e-01	1.0000	77.0	10.61%	5455.3	11.20%
AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer	ATGCCCTGAGGC	1e0	-3.268e-01	1.0000	168.0	23.14%	11694.5	24.01%
Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer	NYTAATCCYB	1e0	-3.184e-01	1.0000	207.0	28.51%	14355.2	29.47%
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer	CYTGTTTACWYW	1e0	-3.019e-01	1.0000	204.0	28.10%	14182.5	29.12%
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1e0	-2.973e-01	1.0000	40.0	5.51%	2936.9	6.03%
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NWGGGTGTGGCY	1e0	-2.908e-01	1.0000	52.0	7.16%	3783.4	7.77%
Hoxa10(Homeobox)/ChickenMSG-Hoxa10.Flag-ChIP-Seq(GSE86088)/Homer	GGYAATGAAA	1e0	-2.807e-01	1.0000	139.0	19.15%	9796.3	20.11%
T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer	ACTTTCGTTTCT	1e0	-2.785e-01	1.0000	2.0	0.28%	183.3	0.38%
PRDM10(Zf)/HEK293-PRDM10.eGFP-ChIP-Seq(Encode)/Homer	TGGTACATTCCA	1e0	-2.762e-01	1.0000	170.0	23.42%	11920.8	24.47%
DMRT1(DM)/Testis-DMRT1-ChIP-Seq(GSE64892)/Homer	TWGHWACAWTGTWDC	1e0	-2.761e-01	1.0000	62.0	8.54%	4498.2	9.24%
Barx1(Homeobox)/Stomach-Barx1.3xFlag-ChIP-Seq(GSE69483)/Homer	AAACMATTAN	1e0	-2.649e-01	1.0000	119.0	16.39%	8453.4	17.36%
CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer	NGYCATAAAWCH	1e0	-2.593e-01	1.0000	210.0	28.93%	14674.1	30.13%
ZNF264(Zf)/HEK293-ZNF264.GFP-ChIP-Seq(GSE58341)/Homer	RGGGCACTAACY	1e0	-2.591e-01	1.0000	164.0	22.59%	11544.4	23.70%
Prop1(Homeobox)/GHFT1-PROP1.biotin-ChIP-Seq(GSE77302)/Homer	NTAATBNAATTA	1e0	-2.560e-01	1.0000	132.0	18.18%	9361.8	19.22%
Hoxa13(Homeobox)/ChickenMSG-Hoxa13.Flag-ChIP-Seq(GSE86088)/Homer	CYHATAAAAN	1e0	-2.510e-01	1.0000	495.0	68.18%	33811.2	69.42%
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1e0	-2.497e-01	1.0000	240.0	33.06%	16729.4	34.35%
Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer	VGCTGWCAVB	1e0	-2.418e-01	1.0000	395.0	54.41%	27175.3	55.79%
Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer	ACTYKNATTCGTGNTACTTC	1e0	-2.412e-01	1.0000	15.0	2.07%	1198.0	2.46%
HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer	TACGTGCV	1e0	-2.390e-01	1.0000	49.0	6.75%	3637.0	7.47%
CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer	GCTAATCC	1e0	-2.362e-01	1.0000	485.0	66.80%	33181.4	68.13%
HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer	GCACGTACCC	1e0	-2.334e-01	1.0000	74.0	10.19%	5395.7	11.08%
GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer	RGGATTAR	1e0	-2.296e-01	1.0000	286.0	39.39%	19886.3	40.83%
Twist(bHLH)/HMLE-TWIST1-ChIP-Seq(Chang_et_al)/Homer	VCAKCTGGNNNCCAGMTGBN	1e0	-2.219e-01	1.0000	36.0	4.96%	2736.2	5.62%
Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer	YTGWCADY	1e0	-2.197e-01	1.0000	565.0	77.82%	38496.5	79.04%
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	AAACCACARM	1e0	-2.187e-01	1.0000	277.0	38.15%	19306.1	39.64%
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1e0	-2.156e-01	1.0000	571.0	78.65%	38898.6	79.86%
ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer	AGGCCTAG	1e0	-2.120e-01	1.0000	361.0	49.72%	24975.2	51.28%
Atf7(bZIP)/3T3L1-Atf7-ChIP-Seq(GSE56872)/Homer	NGRTGACGTCAY	1e0	-2.108e-01	1.0000	106.0	14.60%	7657.0	15.72%
FOXA1:AR(Forkhead,NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	AGTAAACAAAAAAGAACAND	1e0	-2.095e-01	1.0000	21.0	2.89%	1667.9	3.42%
Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1e0	-2.087e-01	1.0000	70.0	9.64%	5156.1	10.59%
NFY(CCAAT)/Promoter/Homer	RGCCAATSRG	1e0	-2.063e-01	1.0000	189.0	26.03%	13366.2	27.44%
ZNF16(Zf)/HEK293-ZNF16.GFP-ChIP-Seq(GSE58341)/Homer	MACCTTCYATGGCTCCCTAKTGCCY	1e0	-2.014e-01	1.0000	1.0	0.14%	114.3	0.23%
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1e0	-2.008e-01	1.0000	253.0	34.85%	17730.8	36.40%
Gata6(Zf)/HUG1N-GATA6-ChIP-Seq(GSE51936)/Homer	YCTTATCTBN	1e0	-1.999e-01	1.0000	209.0	28.79%	14745.3	30.27%
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1e0	-1.923e-01	1.0000	90.0	12.40%	6583.9	13.52%
ZNF528(Zf)/HEK293-ZNF528.GFP-ChIP-Seq(GSE58341)/Homer	AGAAATGACTTCCCT	1e0	-1.855e-01	1.0000	1.0	0.14%	119.8	0.25%
HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer	RTACGTGC	1e0	-1.832e-01	1.0000	238.0	32.78%	16762.3	34.42%
KLF3(Zf)/MEF-Klf3-ChIP-Seq(GSE44748)/Homer	NRGCCCCRCCCHBNN	1e0	-1.814e-01	1.0000	95.0	13.09%	6954.5	14.28%
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	1e0	-1.797e-01	1.0000	30.0	4.13%	2358.3	4.84%
SpiB(ETS)/OCILY3-SPIB-ChIP-Seq(GSE56857)/Homer	AAAGRGGAAGTG	1e0	-1.792e-01	1.0000	55.0	7.58%	4150.4	8.52%
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	1e0	-1.767e-01	1.0000	149.0	20.52%	10701.9	21.97%
bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer	KCACGTGMCN	1e0	-1.736e-01	1.0000	64.0	8.82%	4797.8	9.85%
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1e0	-1.665e-01	1.0000	500.0	68.87%	34353.7	70.53%
RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	SAAACCACAG	1e0	-1.664e-01	1.0000	196.0	27.00%	13951.4	28.64%
PAX6(Paired,Homeobox)/Forebrain-Pax6-ChIP-Seq(GSE66961)/Homer	NGTGTTCAVTSAAGCGKAAA	1e0	-1.640e-01	1.0000	19.0	2.62%	1569.4	3.22%
MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer	RTCATGTGAC	1e0	-1.626e-01	1.0000	211.0	29.06%	14986.6	30.77%
Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer	GTCATGCHTGRCTGS	1e0	-1.571e-01	1.0000	84.0	11.57%	6239.4	12.81%
ZNF415(Zf)/HEK293-ZNF415.GFP-ChIP-Seq(GSE58341)/Homer	GRTGMTRGAGCC	1e0	-1.493e-01	1.0000	125.0	17.22%	9117.9	18.72%
MYNN(Zf)/HEK293-MYNN.eGFP-ChIP-Seq(Encode)/Homer	TTCAAAWTAAAAGTC	1e0	-1.448e-01	1.0000	58.0	7.99%	4430.0	9.10%
PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GCAGCCAAGCRTGACH	1e0	-1.340e-01	1.0000	89.0	12.26%	6647.3	13.65%
E2F(E2F)/Hela-CellCycle-Expression/Homer	TTSGCGCGAAAA	1e0	-1.271e-01	1.0000	4.0	0.55%	428.7	0.88%
p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	ACATGCCCGGGCAT	1e0	-1.263e-01	1.0000	2.0	0.28%	246.6	0.51%
HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer	TTTTATKRGG	1e0	-1.254e-01	1.0000	246.0	33.88%	17497.8	35.93%
Klf9(Zf)/GBM-Klf9-ChIP-Seq(GSE62211)/Homer	GCCACRCCCACY	1e0	-1.237e-01	1.0000	75.0	10.33%	5688.0	11.68%
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	RGCCATTAAC	1e0	-1.229e-01	1.0000	640.0	88.15%	43571.2	89.46%
Zac1(Zf)/Neuro2A-Plagl1-ChIP-Seq(GSE75942)/Homer	HAWGRGGCCM	1e0	-1.182e-01	1.0000	499.0	68.73%	34448.8	70.73%
Six2(Homeobox)/NephronProgenitor-Six2-ChIP-Seq(GSE39837)/Homer	GWAAYHTGAKMC	1e0	-1.163e-01	1.0000	234.0	32.23%	16717.1	34.32%
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	1e0	-1.145e-01	1.0000	268.0	36.91%	19035.6	39.08%
Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer	RRSCACTYAA	1e0	-1.105e-01	1.0000	487.0	67.08%	33689.0	69.17%
TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer	ACWTCAAAGG	1e0	-1.056e-01	1.0000	20.0	2.75%	1729.6	3.55%
DMRT6(DM)/Testis-DMRT6-ChIP-Seq(GSE60440)/Homer	YDGHTACAWTGTADC	1e0	-1.001e-01	1.0000	49.0	6.75%	3888.3	7.98%
Sp2(Zf)/HEK293-Sp2.eGFP-ChIP-Seq(Encode)/Homer	YGGCCCCGCCCC	1e0	-9.954e-02	1.0000	282.0	38.84%	20051.6	41.17%
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	RACCGGAAGT	1e0	-9.471e-02	1.0000	219.0	30.17%	15788.4	32.42%
HINFP(Zf)/K562-HINFP.eGFP-ChIP-Seq(Encode)/Homer	TWVGGTCCGC	1e0	-9.176e-02	1.0000	32.0	4.41%	2661.8	5.46%
ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	AACCGGAAGT	1e0	-9.151e-02	1.0000	326.0	44.90%	23061.6	47.35%
ZNF467(Zf)/HEK293-ZNF467.GFP-ChIP-Seq(GSE58341)/Homer	TGGGGAAGGGCM	1e0	-8.681e-02	1.0000	204.0	28.10%	14799.2	30.38%
Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer	GTRGGTCASTGGGTCA	1e0	-8.592e-02	1.0000	30.0	4.13%	2526.6	5.19%
GATA(Zf),IR3/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NNNNNBAGATAWYATCTVHN	1e0	-8.502e-02	1.0000	28.0	3.86%	2378.9	4.88%
Foxf1(Forkhead)/Lung-Foxf1-ChIP-Seq(GSE77951)/Homer	WWATRTAAACAN	1e0	-7.589e-02	1.0000	235.0	32.37%	16981.0	34.86%
Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer	TAATCCCN	1e0	-7.383e-02	1.0000	649.0	89.39%	44279.0	90.91%
Snail1(Zf)/LS174T-SNAIL1.HA-ChIP-Seq(GSE127183)/Homer	TRCACCTGCY	1e0	-6.424e-02	1.0000	196.0	27.00%	14376.4	29.52%
HNF1b(Homeobox)/PDAC-HNF1B-ChIP-Seq(GSE64557)/Homer	GTTAATNATTAA	1e0	-6.403e-02	1.0000	27.0	3.72%	2360.1	4.85%
ZBTB18(Zf)/HEK293-ZBTB18.GFP-ChIP-Seq(GSE58341)/Homer	AACATCTGGA	1e0	-6.083e-02	1.0000	122.0	16.80%	9249.5	18.99%
Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer	GGTTAAWCATTAA	1e0	-5.951e-02	1.0000	25.0	3.44%	2221.6	4.56%
Hoxa9(Homeobox)/ChickenMSG-Hoxa9.Flag-ChIP-Seq(GSE86088)/Homer	RGCAATNAAA	1e0	-5.924e-02	1.0000	508.0	69.97%	35326.9	72.53%
GATA3(Zf),DR8/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATSTNDNNDSAGATAASN	1e0	-5.119e-02	1.0000	24.0	3.31%	2172.2	4.46%
PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer	RGGTCTCTAACY	1e0	-4.772e-02	1.0000	73.0	10.06%	5833.9	11.98%
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1e0	-4.744e-02	1.0000	100.0	13.77%	7774.8	15.96%
PBX2(Homeobox)/K562-PBX2-ChIP-Seq(Encode)/Homer	RTGATTKATRGN	1e0	-4.737e-02	1.0000	182.0	25.07%	13530.0	27.78%
DUX4(Homeobox)/Myoblasts-DUX4.V5-ChIP-Seq(GSE75791)/Homer	NWTAAYCYAATCAWN	1e0	-4.636e-02	1.0000	9.0	1.24%	977.4	2.01%
ZNF41(Zf)/HEK293-ZNF41.GFP-ChIP-Seq(GSE58341)/Homer	CCTCATGGTGYCYTWYTCCCTTGTG	1e0	-4.588e-02	1.0000	3.0	0.41%	431.6	0.89%
KLF6(Zf)/PDAC-KLF6-ChIP-Seq(GSE64557)/Homer	MKGGGYGTGGCC	1e0	-4.061e-02	1.0000	205.0	28.24%	15178.2	31.16%
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer	WAAGTAAACA	1e0	-4.009e-02	1.0000	248.0	34.16%	18135.3	37.23%
ZNF165(Zf)/WHIM12-ZNF165-ChIP-Seq(GSE65937)/Homer	AAGGKGRCGCAGGCA	1e0	-3.896e-02	1.0000	23.0	3.17%	2143.9	4.40%
Ronin(THAP)/ES-Thap11-ChIP-Seq(GSE51522)/Homer	RACTACAACTCCCAGVAKGC	1e0	-3.695e-02	1.0000	1.0	0.14%	222.6	0.46%
Cux2(Homeobox)/Liver-Cux2-ChIP-Seq(GSE35985)/Homer	HNRAATCAAT	1e0	-3.658e-02	1.0000	84.0	11.57%	6704.2	13.76%
BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer	CNNBRGCGCCCCCTGSTGGC	1e0	-3.317e-02	1.0000	49.0	6.75%	4162.7	8.55%
Pax7(Paired,Homeobox),longest/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	NTAATTDGCYAATTANNWWD	1e0	-3.009e-02	1.0000	3.0	0.41%	468.4	0.96%
Hnf6b(Homeobox)/LNCaP-Hnf6b-ChIP-Seq(GSE106305)/Homer	TATTGAYY	1e0	-2.921e-02	1.0000	176.0	24.24%	13289.2	27.28%
CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	AYAGTGCCMYCTRGTGGCCA	1e0	-2.776e-02	1.0000	37.0	5.10%	3293.5	6.76%
CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	GHCACGTG	1e0	-2.527e-02	1.0000	116.0	15.98%	9110.1	18.70%
BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer	GNCACGTG	1e0	-2.438e-02	1.0000	409.0	56.34%	29162.1	59.87%
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer	GYCATCMATCAT	1e0	-2.399e-02	1.0000	22.0	3.03%	2146.7	4.41%
bHLHE41(bHLH)/proB-Bhlhe41-ChIP-Seq(GSE93764)/Homer	KCACGTGMCN	1e0	-2.329e-02	1.0000	222.0	30.58%	16557.4	33.99%
Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer	SNGCACCTGCHS	1e0	-2.324e-02	1.0000	121.0	16.67%	9492.2	19.49%
NPAS(bHLH)/Liver-NPAS-ChIP-Seq(GSE39860)/Homer	NVCACGTG	1e0	-2.320e-02	1.0000	375.0	51.65%	26922.1	55.27%
KLF1(Zf)/HUDEP2-KLF1-CutnRun(GSE136251)/Homer	VDGGGYGGGGCY	1e0	-2.263e-02	1.0000	166.0	22.87%	12678.9	26.03%
ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer	VAGGTCACNSTGACC	1e0	-2.244e-02	1.0000	61.0	8.40%	5148.5	10.57%
Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer	RSCACTYRAG	1e0	-2.149e-02	1.0000	556.0	76.58%	38765.9	79.59%
c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer	VCCACGTG	1e0	-1.975e-02	1.0000	78.0	10.74%	6434.1	13.21%
HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer	CARRGKBCAAAGTYCA	1e0	-1.810e-02	1.0000	119.0	16.39%	9424.3	19.35%
ETV4(ETS)/HepG2-ETV4-ChIP-Seq(ENCODE)/Homer	ACCGGAAGTG	1e0	-1.779e-02	1.0000	254.0	34.99%	18851.3	38.70%
ZBTB12(Zf)/HEK293-ZBTB12.GFP-ChIP-Seq(GSE58341)/Homer	NGNTCTAGAACCNGV	1e0	-1.701e-02	1.0000	113.0	15.56%	9012.2	18.50%
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1e0	-1.651e-02	1.0000	115.0	15.84%	9164.2	18.82%
USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	SGTCACGTGR	1e0	-1.557e-02	1.0000	89.0	12.26%	7300.5	14.99%
FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer	TRTTTACTTW	1e0	-1.500e-02	1.0000	256.0	35.26%	19048.2	39.11%
GATA3(Zf),DR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATGKDGAGATAAG	1e0	-1.295e-02	1.0000	13.0	1.79%	1487.5	3.05%
TRPS1(Zf)/MCF7-TRPS1-ChIP-Seq(GSE107013)/Homer	AGATAAGANN	1e0	-1.121e-02	1.0000	403.0	55.51%	29039.0	59.62%
ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer	AGGCCTRG	1e0	-1.047e-02	1.0000	300.0	41.32%	22168.2	45.51%
NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer	KCCACGTGAC	1e0	-1.034e-02	1.0000	245.0	33.75%	18420.6	37.82%
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1e0	-9.368e-03	1.0000	283.0	38.98%	21051.5	43.22%
KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer	DGGGYGKGGC	1e0	-8.491e-03	1.0000	234.0	32.23%	17727.9	36.40%
NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer	CTGCGCATGCGC	1e0	-7.742e-03	1.0000	10.0	1.38%	1282.1	2.63%
YY1(Zf)/Promoter/Homer	CAAGATGGCGGC	1e0	-6.848e-03	1.0000	9.0	1.24%	1203.5	2.47%
ETS(ETS)/Promoter/Homer	AACCGGAAGT	1e0	-6.336e-03	1.0000	61.0	8.40%	5430.1	11.15%
n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	VRCCACGTGG	1e0	-6.116e-03	1.0000	172.0	23.69%	13506.9	27.73%
Max(bHLH)/K562-Max-ChIP-Seq(GSE31477)/Homer	RCCACGTGGYYN	1e0	-6.030e-03	1.0000	176.0	24.24%	13792.6	28.32%
GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATAASR	1e0	-5.791e-03	1.0000	306.0	42.15%	22768.1	46.75%
c-Myc(bHLH)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	VVCCACGTGG	1e0	-4.602e-03	1.0000	129.0	17.77%	10520.0	21.60%
THRb(NR)/HepG2-THRb.Flag-ChIP-Seq(Encode)/Homer	GGTCACCTGAGGTCA	1e0	-4.243e-03	1.0000	122.0	16.80%	10036.0	20.61%
FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer	AGGTCANTGACCTB	1e0	-3.948e-03	1.0000	76.0	10.47%	6664.8	13.68%
THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1e0	-3.907e-03	1.0000	89.0	12.26%	7637.7	15.68%
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	1e0	-3.376e-03	1.0000	117.0	16.12%	9730.0	19.98%
RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer	TAGGGCAAAGGTCA	1e0	-3.333e-03	1.0000	253.0	34.85%	19323.8	39.67%
CUX1(Homeobox)/K562-CUX1-ChIP-Seq(GSE92882)/Homer	TATCGATNAN	1e0	-2.800e-03	1.0000	128.0	17.63%	10574.9	21.71%
HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer	NTATYGATCH	1e0	-2.690e-03	1.0000	97.0	13.36%	8315.6	17.07%
SCRT1(Zf)/HEK293-SCRT1.eGFP-ChIP-Seq(Encode)/Homer	GCAACAGGTG	1e0	-2.302e-03	1.0000	57.0	7.85%	5324.8	10.93%
MNT(bHLH)/HepG2-MNT-ChIP-Seq(Encode)/Homer	DGCACACGTG	1e0	-1.999e-03	1.0000	261.0	35.95%	20020.4	41.10%
VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer	ARAGGTCANWGAGTTCANNN	1e0	-1.397e-03	1.0000	38.0	5.23%	3904.5	8.02%
Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer	GYMATAAAAH	1e0	-1.128e-03	1.0000	147.0	20.25%	12169.3	24.99%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	RGGTCADNNAGAGGTCAV	1e0	-8.720e-04	1.0000	2.0	0.28%	626.0	1.29%
NRF(NRF)/Promoter/Homer	STGCGCATGCGC	1e0	-7.470e-04	1.0000	21.0	2.89%	2559.0	5.25%
Bcl11a(Zf)/HSPC-BCL11A-ChIP-Seq(GSE104676)/Homer	TYTGACCASWRG	1e0	-5.520e-04	1.0000	144.0	19.83%	12119.3	24.88%
OCT:OCT(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	YATGCATATRCATRT	1e0	-4.190e-04	1.0000	28.0	3.86%	3245.9	6.66%
PSE(SNAPc)/K562-mStart-Seq/Homer	WAVTCACCMTAASYDAAAAG	1e0	-3.650e-04	1.0000	112.0	15.43%	9860.4	20.24%
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	AVCCGGAAGT	1e0	-3.500e-04	1.0000	92.0	12.67%	8368.5	17.18%
E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	NVCACCTGBN	1e0	-3.300e-04	1.0000	290.0	39.94%	22478.9	46.15%
Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer	BTCAAGGTCA	1e0	-3.150e-04	1.0000	128.0	17.63%	11074.2	22.74%
Pax7(Paired,Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCAATTA	1e0	-2.050e-04	1.0000	8.0	1.10%	1457.9	2.99%
Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer	KTGACCTTGA	1e0	-1.980e-04	1.0000	141.0	19.42%	12125.9	24.90%
GFY-Staf(?,Zf)/Promoter/Homer	RACTACAATTCCCAGAAKGC	1e0	-1.830e-04	1.0000	9.0	1.24%	1574.1	3.23%
PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer	TGACCTTTGCCCCA	1e0	-9.400e-05	1.0000	207.0	28.51%	17024.5	34.95%
ZEB2(Zf)/SNU398-ZEB2-ChIP-Seq(GSE103048)/Homer	GNMCAGGTGTGC	1e0	-6.900e-05	1.0000	202.0	27.82%	16739.3	34.37%
RAR:RXR(NR),DR0/ES-RAR-ChIP-Seq(GSE56893)/Homer	AGGTCAAGGTCA	1e0	-4.700e-05	1.0000	34.0	4.68%	4056.5	8.33%
SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer	CAAGGHCANV	1e0	-1.100e-05	1.0000	108.0	14.88%	10209.3	20.96%
ERRg(NR)/Kidney-ESRRG-ChIP-Seq(GSE104905)/Homer	GTGACCTTGRVN	1e0	-1.100e-05	1.0000	175.0	24.10%	15175.9	31.16%
PPARa(NR),DR1/Liver-Ppara-ChIP-Seq(GSE47954)/Homer	VNAGGKCAAAGGTCA	1e0	-1.000e-05	1.0000	232.0	31.96%	19248.1	39.52%
RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer	AGGTCAAGGTCA	1e0	-9.000e-06	1.0000	11.0	1.52%	2074.8	4.26%
TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer	GAGGTCAAAGGTCA	1e0	-5.000e-06	1.0000	15.0	2.07%	2544.2	5.22%
Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer	BTCAAGGTCA	1e0	-5.000e-06	1.0000	160.0	22.04%	14250.3	29.26%
KLF10(Zf)/HEK293-KLF10.GFP-ChIP-Seq(GSE58341)/Homer	GGGGGTGTGTCC	1e0	-0.000e+00	1.0000	133.0	18.32%	12761.3	26.20%
ZEB1(Zf)/PDAC-ZEB1-ChIP-Seq(GSE64557)/Homer	VCAGGTRDRY	1e0	-0.000e+00	1.0000	331.0	45.59%	26986.1	55.41%
Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer	CAAAGGTCAG	1e0	-0.000e+00	1.0000	404.0	55.65%	32004.9	65.71%
THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer	TRAGGTCA	1e0	-0.000e+00	1.0000	591.0	81.40%	44177.9	90.70%
LRF(Zf)/Erythroblasts-ZBTB7A-ChIP-Seq(GSE74977)/Homer	AAGACCCYYN	1e0	-0.000e+00	1.0000	208.0	28.65%	20727.7	42.56%
RARa(NR)/K562-RARa-ChIP-Seq(Encode)/Homer	TTGAMCTTTG	1e0	-0.000e+00	1.0000	489.0	67.36%	38875.4	79.82%
COUP-TFII(NR)/K562-NR2F1-ChIP-Seq(Encode)/Homer	GKBCARAGGTCA	1e0	0.000e+00	1.0000	247.0	34.02%	24297.4	49.89%
COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer	AGRGGTCA	1e0	0.000e+00	1.0000	280.0	38.57%	27545.2	56.55%
DUX(Homeobox)/C2C12-Dux-ChIP-Seq(GSE87279)/Homer	BCWGATTCAATCAAN	1e0	0.000e+00	1.0000	0.0	0.00%	43.5	0.09%
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1e0	0.000e+00	1.0000	0.0	0.00%	64.2	0.13%
EAR2(NR)/K562-NR2F6-ChIP-Seq(Encode)/Homer	NRBCARRGGTCA	1e0	0.000e+00	1.0000	213.0	29.34%	22442.9	46.08%
ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer	GGVTCTCGCGAGAAC	1e0	0.000e+00	1.0000	0.0	0.00%	216.6	0.44%
ZFP3(Zf)/HEK293-ZFP3.GFP-ChIP-Seq(GSE58341)/Homer	GGGTTTTGAAGGATGARTAGGAGTT	1e0	0.000e+00	1.0000	0.0	0.00%	34.6	0.07%