Information for 1-RTGACTCAYN (Motif 1)


Reverse Opposite:

p-value:1e-56
log p-value:-1.289e+02
Information Content per bp:1.670
Number of Target Sequences with motif217.0
Percentage of Target Sequences with motif29.89%
Number of Background Sequences with motif4434.8
Percentage of Background Sequences with motif9.11%
Average Position of motif in Targets440.2 +/- 258.1bp
Average Position of motif in Background410.7 +/- 251.3bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.25
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer

Match Rank:1
Score:0.98
Offset:-1
Orientation:forward strand
Alignment:-RTGACTCAYN-
DATGASTCATHN

AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer

Match Rank:2
Score:0.98
Offset:0
Orientation:forward strand
Alignment:RTGACTCAYN
ATGACTCATC

Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer

Match Rank:3
Score:0.98
Offset:-1
Orientation:forward strand
Alignment:-RTGACTCAYN-
NATGACTCATNN

Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer

Match Rank:4
Score:0.98
Offset:-2
Orientation:reverse strand
Alignment:--RTGACTCAYN
NNVTGASTCATN

BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer

Match Rank:5
Score:0.98
Offset:0
Orientation:reverse strand
Alignment:RTGACTCAYN
ATGASTCATH

Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer

Match Rank:6
Score:0.97
Offset:-1
Orientation:reverse strand
Alignment:-RTGACTCAYN-
DATGASTCATNN

MA0490.1_JUNB/Jaspar

Match Rank:7
Score:0.97
Offset:-2
Orientation:forward strand
Alignment:--RTGACTCAYN
GGATGACTCAT-

MA0478.1_FOSL2/Jaspar

Match Rank:8
Score:0.97
Offset:-2
Orientation:forward strand
Alignment:--RTGACTCAYN
GGATGACTCAT-

MA0476.1_FOS/Jaspar

Match Rank:9
Score:0.97
Offset:-1
Orientation:forward strand
Alignment:-RTGACTCAYN
TGTGACTCATT

MA0477.1_FOSL1/Jaspar

Match Rank:10
Score:0.97
Offset:-1
Orientation:forward strand
Alignment:-RTGACTCAYN
GGTGACTCATG