Information for 10-AGCCAGCCGG (Motif 15)


Reverse Opposite:

p-value:1e-14
log p-value:-3.317e+01
Information Content per bp:1.705
Number of Target Sequences with motif298.0
Percentage of Target Sequences with motif41.05%
Number of Background Sequences with motif13429.6
Percentage of Background Sequences with motif27.58%
Average Position of motif in Targets430.2 +/- 294.0bp
Average Position of motif in Background413.5 +/- 265.3bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.24
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0461.1_Atoh1/Jaspar

Match Rank:1
Score:0.66
Offset:1
Orientation:reverse strand
Alignment:AGCCAGCCGG
-GCCATCTG-

POL010.1_DCE_S_III/Jaspar

Match Rank:2
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-AGCCAGCCGG
CAGCC------

Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer

Match Rank:3
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:AGCCAGCCGG---
-GCCAGCTGBTNB

MA0092.1_Hand1::Tcfe2a/Jaspar

Match Rank:4
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-AGCCAGCCGG
ATGCCAGACN-

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:5
Score:0.60
Offset:-2
Orientation:reverse strand
Alignment:--AGCCAGCCGG
BCAGACWA----

Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer

Match Rank:6
Score:0.59
Offset:0
Orientation:forward strand
Alignment:AGCCAGCCGG
NAHCAGCTGD

MA0161.1_NFIC/Jaspar

Match Rank:7
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:AGCCAGCCGG
TGCCAA----

NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer

Match Rank:8
Score:0.58
Offset:1
Orientation:forward strand
Alignment:AGCCAGCCGG-
-GCCATCTGTT

POL006.1_BREu/Jaspar

Match Rank:9
Score:0.58
Offset:0
Orientation:forward strand
Alignment:AGCCAGCCGG
AGCGCGCC--

Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer

Match Rank:10
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-AGCCAGCCGG-
NNVVCAGCTGBN