Information for 12-TGCTTCTAAA (Motif 16)


Reverse Opposite:

p-value:1e-13
log p-value:-3.092e+01
Information Content per bp:1.842
Number of Target Sequences with motif73.0
Percentage of Target Sequences with motif10.06%
Number of Background Sequences with motif1805.5
Percentage of Background Sequences with motif3.71%
Average Position of motif in Targets496.1 +/- 309.9bp
Average Position of motif in Background417.6 +/- 257.7bp
Strand Bias (log2 ratio + to - strand density)0.5
Multiplicity (# of sites on avg that occur together)1.05
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

TATA-Box(TBP)/Promoter/Homer

Match Rank:1
Score:0.65
Offset:1
Orientation:forward strand
Alignment:TGCTTCTAAA---
-CCTTTTATAGNC

POL008.1_DCE_S_I/Jaspar

Match Rank:2
Score:0.65
Offset:1
Orientation:forward strand
Alignment:TGCTTCTAAA
-GCTTCC---

PH0068.1_Hoxc13/Jaspar

Match Rank:3
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--TGCTTCTAAA----
AAAGCTCGTAAAATTT

PH0048.1_Hoxa13/Jaspar

Match Rank:4
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--TGCTTCTAAA----
AAACCTCGTAAAATTT

PB0154.1_Osr1_2/Jaspar

Match Rank:5
Score:0.61
Offset:-3
Orientation:forward strand
Alignment:---TGCTTCTAAA---
ACATGCTACCTAATAC

HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer

Match Rank:6
Score:0.58
Offset:1
Orientation:forward strand
Alignment:TGCTTCTAAA-
-NCYAATAAAA

PB0155.1_Osr2_2/Jaspar

Match Rank:7
Score:0.57
Offset:-3
Orientation:forward strand
Alignment:---TGCTTCTAAA---
ACTTGCTACCTACACC

POL012.1_TATA-Box/Jaspar

Match Rank:8
Score:0.54
Offset:-4
Orientation:reverse strand
Alignment:----TGCTTCTAAA-
NNNNNNCTTTTATAN

MA0108.2_TBP/Jaspar

Match Rank:9
Score:0.54
Offset:-4
Orientation:reverse strand
Alignment:----TGCTTCTAAA-
NNNNNNCTTTTATAN

PB0194.1_Zbtb12_2/Jaspar

Match Rank:10
Score:0.54
Offset:-1
Orientation:reverse strand
Alignment:-TGCTTCTAAA----
AGNGTTCTAATGANN