Information for 10-AACGCAGC (Motif 17)


Reverse Opposite:

p-value:1e-13
log p-value:-3.087e+01
Information Content per bp:1.611
Number of Target Sequences with motif424.0
Percentage of Target Sequences with motif58.40%
Number of Background Sequences with motif21669.7
Percentage of Background Sequences with motif44.50%
Average Position of motif in Targets460.0 +/- 293.0bp
Average Position of motif in Background415.1 +/- 258.3bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.47
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

POL009.1_DCE_S_II/Jaspar

Match Rank:1
Score:0.69
Offset:2
Orientation:reverse strand
Alignment:AACGCAGC
--CACAGN

PB0207.1_Zic3_2/Jaspar

Match Rank:2
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-AACGCAGC------
GAGCACAGCAGGACA

POL010.1_DCE_S_III/Jaspar

Match Rank:3
Score:0.66
Offset:4
Orientation:forward strand
Alignment:AACGCAGC-
----CAGCC

MA0048.1_NHLH1/Jaspar

Match Rank:4
Score:0.65
Offset:1
Orientation:reverse strand
Alignment:AACGCAGC-----
-NCGCAGCTGCGN

PB0205.1_Zic1_2/Jaspar

Match Rank:5
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-AACGCAGC------
CCACACAGCAGGAGA

PB0206.1_Zic2_2/Jaspar

Match Rank:6
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-AACGCAGC------
CCACACAGCAGGAGA

POL013.1_MED-1/Jaspar

Match Rank:7
Score:0.63
Offset:2
Orientation:reverse strand
Alignment:AACGCAGC
--CGGAGC

MA0483.1_Gfi1b/Jaspar

Match Rank:8
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--AACGCAGC-
AAATCACAGCA

POL008.1_DCE_S_I/Jaspar

Match Rank:9
Score:0.59
Offset:2
Orientation:reverse strand
Alignment:AACGCAGC
--NGAAGC

Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer

Match Rank:10
Score:0.58
Offset:3
Orientation:forward strand
Alignment:AACGCAGC-----
---NCAGCTGCTG