Information for 11-GGAACAAT (Motif 18)


Reverse Opposite:

p-value:1e-13
log p-value:-3.071e+01
Information Content per bp:1.792
Number of Target Sequences with motif340.0
Percentage of Target Sequences with motif46.83%
Number of Background Sequences with motif16260.9
Percentage of Background Sequences with motif33.39%
Average Position of motif in Targets448.7 +/- 306.9bp
Average Position of motif in Background414.6 +/- 249.4bp
Strand Bias (log2 ratio + to - strand density)-0.0
Multiplicity (# of sites on avg that occur together)1.34
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0173.1_Sox21_2/Jaspar

Match Rank:1
Score:0.87
Offset:-4
Orientation:reverse strand
Alignment:----GGAACAAT-----
NNNNNGAACAATTGANN

PB0072.1_Sox5_1/Jaspar

Match Rank:2
Score:0.84
Offset:-3
Orientation:forward strand
Alignment:---GGAACAAT-----
TTTAGAACAATAAAAT

PB0183.1_Sry_2/Jaspar

Match Rank:3
Score:0.83
Offset:-4
Orientation:forward strand
Alignment:----GGAACAAT-----
TCACGGAACAATAGGTG

MF0011.1_HMG_class/Jaspar

Match Rank:4
Score:0.83
Offset:2
Orientation:reverse strand
Alignment:GGAACAAT
--AACAAT

PB0063.1_Sox13_1/Jaspar

Match Rank:5
Score:0.82
Offset:-3
Orientation:forward strand
Alignment:---GGAACAAT-----
TTAAGAACAATAAATT

PB0070.1_Sox30_1/Jaspar

Match Rank:6
Score:0.82
Offset:-2
Orientation:forward strand
Alignment:--GGAACAAT------
AATGAACAATGGAATT

Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer

Match Rank:7
Score:0.81
Offset:0
Orientation:reverse strand
Alignment:GGAACAAT--
RNAACAATGG

MA0087.1_Sox5/Jaspar

Match Rank:8
Score:0.81
Offset:1
Orientation:reverse strand
Alignment:GGAACAAT
-NAACAAT

PB0065.1_Sox15_1/Jaspar

Match Rank:9
Score:0.80
Offset:-3
Orientation:forward strand
Alignment:---GGAACAAT------
TAGTGAACAATAGATTT

MA0077.1_SOX9/Jaspar

Match Rank:10
Score:0.79
Offset:1
Orientation:reverse strand
Alignment:GGAACAAT--
-GAACAATGG