Information for 11-TGCAGAAAAAGA (Motif 19)


Reverse Opposite:

p-value:1e-12
log p-value:-2.880e+01
Information Content per bp:1.865
Number of Target Sequences with motif23.0
Percentage of Target Sequences with motif3.17%
Number of Background Sequences with motif208.5
Percentage of Background Sequences with motif0.43%
Average Position of motif in Targets465.8 +/- 233.3bp
Average Position of motif in Background423.4 +/- 271.1bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0145.1_Mafb_2/Jaspar

Match Rank:1
Score:0.69
Offset:-4
Orientation:forward strand
Alignment:----TGCAGAAAAAGA
CAATTGCAAAAATAT-

Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer

Match Rank:2
Score:0.58
Offset:-3
Orientation:reverse strand
Alignment:---TGCAGAAAAAGA
ATTTGCATACAATGG

PB0192.1_Tcfap2e_2/Jaspar

Match Rank:3
Score:0.58
Offset:0
Orientation:forward strand
Alignment:TGCAGAAAAAGA--
TACTGGAAAAAAAA

SA0002.1_at_AC_acceptor/Jaspar

Match Rank:4
Score:0.57
Offset:-4
Orientation:reverse strand
Alignment:----TGCAGAAAAAGA----
NNCCTGNAAAAAAAAAAAAA

SA0001.1_at_AC_acceptor/Jaspar

Match Rank:5
Score:0.57
Offset:-4
Orientation:reverse strand
Alignment:----TGCAGAAAAAGA----
NNCCTGNAAAAAAAAAAAAA

MA0497.1_MEF2C/Jaspar

Match Rank:6
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--TGCAGAAAAAGA-
ATGCTAAAAATAGAA

PB0116.1_Elf3_2/Jaspar

Match Rank:7
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--TGCAGAAAAAGA---
GTTCAAAAAAAAAATTC

Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer

Match Rank:8
Score:0.56
Offset:0
Orientation:forward strand
Alignment:TGCAGAAAAAGA
DCYAAAAATAGM

PB0182.1_Srf_2/Jaspar

Match Rank:9
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-TGCAGAAAAAGA----
GTTAAAAAAAAAAATTA

PB0166.1_Sox12_2/Jaspar

Match Rank:10
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-TGCAGAAAAAGA---
AAACAGACAAAGGAAT