Information for 2-TCBCTGCCAA (Motif 2)


Reverse Opposite:

p-value:1e-29
log p-value:-6.709e+01
Information Content per bp:1.636
Number of Target Sequences with motif374.0
Percentage of Target Sequences with motif51.52%
Number of Background Sequences with motif15210.1
Percentage of Background Sequences with motif31.23%
Average Position of motif in Targets426.5 +/- 266.9bp
Average Position of motif in Background411.2 +/- 257.1bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.41
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:1
Score:0.92
Offset:3
Orientation:forward strand
Alignment:TCBCTGCCAA-
---TTGCCAAG

MA0161.1_NFIC/Jaspar

Match Rank:2
Score:0.88
Offset:4
Orientation:reverse strand
Alignment:TCBCTGCCAA
----TGCCAA

PB0029.1_Hic1_1/Jaspar

Match Rank:3
Score:0.74
Offset:0
Orientation:forward strand
Alignment:TCBCTGCCAA------
ACTATGCCAACCTACC

Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer

Match Rank:4
Score:0.74
Offset:1
Orientation:forward strand
Alignment:TCBCTGCCAA-
-VGCTGWCAVB

MA0597.1_THAP1/Jaspar

Match Rank:5
Score:0.69
Offset:3
Orientation:forward strand
Alignment:TCBCTGCCAA--
---CTGCCCGCA

PH0105.1_Meis3/Jaspar

Match Rank:6
Score:0.66
Offset:-3
Orientation:forward strand
Alignment:---TCBCTGCCAA---
AATTACCTGTCAATAC

NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer

Match Rank:7
Score:0.65
Offset:4
Orientation:reverse strand
Alignment:TCBCTGCCAA----------
----TGCCAAAATAAACANN

PH0170.1_Tgif2/Jaspar

Match Rank:8
Score:0.65
Offset:-3
Orientation:forward strand
Alignment:---TCBCTGCCAA---
AACTAGCTGTCAATAC

PH0141.1_Pknox2/Jaspar

Match Rank:9
Score:0.65
Offset:-3
Orientation:forward strand
Alignment:---TCBCTGCCAA---
AAGCACCTGTCAATAT

PH0169.1_Tgif1/Jaspar

Match Rank:10
Score:0.65
Offset:-3
Orientation:reverse strand
Alignment:---TCBCTGCCAA----
NNNCAGCTGTCAATATN