Information for 14-GCACAGAACAAT (Motif 22)


Reverse Opposite:

p-value:1e-10
log p-value:-2.456e+01
Information Content per bp:1.604
Number of Target Sequences with motif247.0
Percentage of Target Sequences with motif34.02%
Number of Background Sequences with motif11282.4
Percentage of Background Sequences with motif23.17%
Average Position of motif in Targets422.5 +/- 294.5bp
Average Position of motif in Background413.5 +/- 255.1bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.26
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0208.1_Zscan4_2/Jaspar

Match Rank:1
Score:0.70
Offset:-4
Orientation:forward strand
Alignment:----GCACAGAACAAT
CGAAGCACACAAAATA

PB0074.1_Sox8_1/Jaspar

Match Rank:2
Score:0.65
Offset:1
Orientation:reverse strand
Alignment:GCACAGAACAAT------
-TNNAGAACAATANATNN

PB0062.1_Sox12_1/Jaspar

Match Rank:3
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:GCACAGAACAAT--
NTTNAGAACAATTA

PB0072.1_Sox5_1/Jaspar

Match Rank:4
Score:0.63
Offset:1
Orientation:forward strand
Alignment:GCACAGAACAAT-----
-TTTAGAACAATAAAAT

PB0173.1_Sox21_2/Jaspar

Match Rank:5
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:GCACAGAACAAT-----
NNNNNGAACAATTGANN

PB0070.1_Sox30_1/Jaspar

Match Rank:6
Score:0.63
Offset:2
Orientation:forward strand
Alignment:GCACAGAACAAT------
--AATGAACAATGGAATT

PB0183.1_Sry_2/Jaspar

Match Rank:7
Score:0.63
Offset:0
Orientation:forward strand
Alignment:GCACAGAACAAT-----
TCACGGAACAATAGGTG

POL009.1_DCE_S_II/Jaspar

Match Rank:8
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:GCACAGAACAAT
-CACAGN-----

MF0011.1_HMG_class/Jaspar

Match Rank:9
Score:0.62
Offset:6
Orientation:reverse strand
Alignment:GCACAGAACAAT
------AACAAT

PB0063.1_Sox13_1/Jaspar

Match Rank:10
Score:0.61
Offset:1
Orientation:forward strand
Alignment:GCACAGAACAAT-----
-TTAAGAACAATAAATT