Information for 18-CAKTTGGAAC (Motif 25)


Reverse Opposite:

p-value:1e-9
log p-value:-2.147e+01
Information Content per bp:1.707
Number of Target Sequences with motif77.0
Percentage of Target Sequences with motif10.61%
Number of Background Sequences with motif2403.1
Percentage of Background Sequences with motif4.93%
Average Position of motif in Targets446.5 +/- 298.9bp
Average Position of motif in Background410.3 +/- 248.3bp
Strand Bias (log2 ratio + to - strand density)-0.8
Multiplicity (# of sites on avg that occur together)1.08
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0152.1_NFATC2/Jaspar

Match Rank:1
Score:0.70
Offset:4
Orientation:reverse strand
Alignment:CAKTTGGAAC-
----TGGAAAA

PB0150.1_Mybl1_2/Jaspar

Match Rank:2
Score:0.68
Offset:-5
Orientation:reverse strand
Alignment:-----CAKTTGGAAC
CACGGCAGTTGGTNN

NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer

Match Rank:3
Score:0.67
Offset:-2
Orientation:reverse strand
Alignment:--CAKTTGGAAC
AACAGATGGC--

Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer

Match Rank:4
Score:0.67
Offset:-2
Orientation:reverse strand
Alignment:--CAKTTGGAAC
AACAKATGGY--

NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma et al.)/Homer

Match Rank:5
Score:0.67
Offset:2
Orientation:reverse strand
Alignment:CAKTTGGAAC--
--AATGGAAAAT

AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer

Match Rank:6
Score:0.66
Offset:-3
Orientation:forward strand
Alignment:---CAKTTGGAAC
TGGCAGTTGG---

Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer

Match Rank:7
Score:0.65
Offset:-4
Orientation:forward strand
Alignment:----CAKTTGGAAC
NNVVCAGCTGBN--

MA0461.1_Atoh1/Jaspar

Match Rank:8
Score:0.65
Offset:0
Orientation:forward strand
Alignment:CAKTTGGAAC
CAGATGGC--

E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer

Match Rank:9
Score:0.64
Offset:-2
Orientation:reverse strand
Alignment:--CAKTTGGAAC
NNCAGGTGNN--

MA0161.1_NFIC/Jaspar

Match Rank:10
Score:0.64
Offset:3
Orientation:forward strand
Alignment:CAKTTGGAAC
---TTGGCA-