Information for 19-GCGATTTCAG (Motif 27)


Reverse Opposite:

p-value:1e-7
log p-value:-1.629e+01
Information Content per bp:1.496
Number of Target Sequences with motif31.0
Percentage of Target Sequences with motif4.27%
Number of Background Sequences with motif683.0
Percentage of Background Sequences with motif1.40%
Average Position of motif in Targets483.1 +/- 300.3bp
Average Position of motif in Background412.4 +/- 260.1bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.03
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer

Match Rank:1
Score:0.66
Offset:1
Orientation:reverse strand
Alignment:GCGATTTCAG-
-TGGTTTCAGT

MA0038.1_Gfi1/Jaspar

Match Rank:2
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--GCGATTTCAG
CNGTGATTTN--

PH0037.1_Hdx/Jaspar

Match Rank:3
Score:0.60
Offset:-4
Orientation:reverse strand
Alignment:----GCGATTTCAG---
TNNNATGATTTCNNCNN

PB0184.1_Tbp_2/Jaspar

Match Rank:4
Score:0.59
Offset:0
Orientation:forward strand
Alignment:GCGATTTCAG-----
CCGATTTAAGCGACC

MA0483.1_Gfi1b/Jaspar

Match Rank:5
Score:0.56
Offset:-4
Orientation:reverse strand
Alignment:----GCGATTTCAG
TGCTGTGATTT---

MA0158.1_HOXA5/Jaspar

Match Rank:6
Score:0.56
Offset:2
Orientation:reverse strand
Alignment:GCGATTTCAG
--AATTAGTG

PB0126.1_Gata5_2/Jaspar

Match Rank:7
Score:0.56
Offset:-4
Orientation:forward strand
Alignment:----GCGATTTCAG---
GACAGAGATATCAGTGT

CHR(?)/Hela-CellCycle-Expression/Homer

Match Rank:8
Score:0.55
Offset:1
Orientation:forward strand
Alignment:GCGATTTCAG-
-CGGTTTCAAA

MA0019.1_Ddit3::Cebpa/Jaspar

Match Rank:9
Score:0.54
Offset:0
Orientation:reverse strand
Alignment:GCGATTTCAG--
GGGATTGCATNN

Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer

Match Rank:10
Score:0.54
Offset:0
Orientation:reverse strand
Alignment:GCGATTTCAG--
KCTATTTTTRGH