Information for 19-TGTGGGAC (Motif 28)


Reverse Opposite:

p-value:1e-6
log p-value:-1.395e+01
Information Content per bp:1.911
Number of Target Sequences with motif133.0
Percentage of Target Sequences with motif18.32%
Number of Background Sequences with motif5897.7
Percentage of Background Sequences with motif12.11%
Average Position of motif in Targets418.8 +/- 285.8bp
Average Position of motif in Background410.4 +/- 249.4bp
Strand Bias (log2 ratio + to - strand density)0.5
Multiplicity (# of sites on avg that occur together)1.25
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer

Match Rank:1
Score:0.75
Offset:0
Orientation:reverse strand
Alignment:TGTGGGAC--
CSTGGGAAAD

PB0114.1_Egr1_2/Jaspar

Match Rank:2
Score:0.74
Offset:-5
Orientation:forward strand
Alignment:-----TGTGGGAC---
TGCGGAGTGGGACTGG

RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer

Match Rank:3
Score:0.65
Offset:-3
Orientation:reverse strand
Alignment:---TGTGGGAC-
NNHTGTGGTTWN

E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer

Match Rank:4
Score:0.63
Offset:0
Orientation:forward strand
Alignment:TGTGGGAC--
GGCGGGAARN

Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer

Match Rank:5
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--TGTGGGAC--
NGCGTGGGCGGR

Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer

Match Rank:6
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-TGTGGGAC-
AGGTGTGAAM

ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer

Match Rank:7
Score:0.61
Offset:-5
Orientation:reverse strand
Alignment:-----TGTGGGAC--
RGSMTBCTGGGAAAT

MA0471.1_E2F6/Jaspar

Match Rank:8
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-TGTGGGAC--
GGGCGGGAAGG

POL011.1_XCPE1/Jaspar

Match Rank:9
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-TGTGGGAC-
GGGCGGGACC

MA0472.1_EGR2/Jaspar

Match Rank:10
Score:0.60
Offset:-3
Orientation:reverse strand
Alignment:---TGTGGGAC----
GTGCGTGGGCGGGNG