Information for 24-ATCAGGAGGA (Motif 33)


Reverse Opposite:

p-value:1e-1
log p-value:-3.004e+00
Information Content per bp:1.530
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.69%
Number of Background Sequences with motif132.8
Percentage of Background Sequences with motif0.27%
Average Position of motif in Targets269.8 +/- 168.1bp
Average Position of motif in Background425.7 +/- 246.9bp
Strand Bias (log2 ratio + to - strand density)4.2
Multiplicity (# of sites on avg that occur together)4.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer

Match Rank:1
Score:0.67
Offset:3
Orientation:reverse strand
Alignment:ATCAGGAGGA---
---GGGAGGACNG

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:2
Score:0.60
Offset:0
Orientation:forward strand
Alignment:ATCAGGAGGA--
CACAGCAGGGGG

MA0473.1_ELF1/Jaspar

Match Rank:3
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--ATCAGGAGGA-
GAACCAGGAAGTG

PB0205.1_Zic1_2/Jaspar

Match Rank:4
Score:0.59
Offset:-3
Orientation:forward strand
Alignment:---ATCAGGAGGA--
CCACACAGCAGGAGA

PB0077.1_Spdef_1/Jaspar

Match Rank:5
Score:0.58
Offset:-4
Orientation:reverse strand
Alignment:----ATCAGGAGGA--
AANNATCCGGATGTNN

SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer

Match Rank:6
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:ATCAGGAGGA
ANCAGGATGT

EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer

Match Rank:7
Score:0.58
Offset:0
Orientation:forward strand
Alignment:ATCAGGAGGA
AVCAGGAAGT

E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer

Match Rank:8
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:ATCAGGAGGA
NNCAGGTGNN

MA0598.1_EHF/Jaspar

Match Rank:9
Score:0.57
Offset:2
Orientation:reverse strand
Alignment:ATCAGGAGGA
--CAGGAAGG

Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski et al.)/Homer

Match Rank:10
Score:0.57
Offset:0
Orientation:forward strand
Alignment:ATCAGGAGGA
AACAGGAAGT