Information for 25-TCAGTGGTCAGA (Motif 36)


Reverse Opposite:

p-value:1e0
log p-value:-1.998e+00
Information Content per bp:1.941
Number of Target Sequences with motif2.0
Percentage of Target Sequences with motif0.28%
Number of Background Sequences with motif43.5
Percentage of Background Sequences with motif0.09%
Average Position of motif in Targets323.6 +/- 185.7bp
Average Position of motif in Background370.5 +/- 207.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)7.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0512.1_Rxra/Jaspar

Match Rank:1
Score:0.69
Offset:1
Orientation:forward strand
Alignment:TCAGTGGTCAGA
-CAAAGGTCAGA

PB0118.1_Esrra_2/Jaspar

Match Rank:2
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--TCAGTGGTCAGA---
GGCGAGGGGTCAAGGGC

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:3
Score:0.63
Offset:1
Orientation:forward strand
Alignment:TCAGTGGTCAGA
-CAAAGGTCAG-

TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer

Match Rank:4
Score:0.63
Offset:-4
Orientation:forward strand
Alignment:----TCAGTGGTCAGA
GAGGTCAAAGGTCA--

PB0099.1_Zfp691_1/Jaspar

Match Rank:5
Score:0.62
Offset:-3
Orientation:forward strand
Alignment:---TCAGTGGTCAGA--
CGAACAGTGCTCACTAT

MA0504.1_NR2C2/Jaspar

Match Rank:6
Score:0.62
Offset:-5
Orientation:forward strand
Alignment:-----TCAGTGGTCAGA
AGGGGTCAGAGGTCA--

PH0004.1_Nkx3-2/Jaspar

Match Rank:7
Score:0.58
Offset:-5
Orientation:reverse strand
Alignment:-----TCAGTGGTCAGA
NTNNTTAAGTGGTTANN

POL004.1_CCAAT-box/Jaspar

Match Rank:8
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:TCAGTGGTCAGA
TGATTGGCTANN

PB0057.1_Rxra_1/Jaspar

Match Rank:9
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--TCAGTGGTCAGA---
NTNNNGGGGTCANGNNN

PB0030.1_Hnf4a_1/Jaspar

Match Rank:10
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--TCAGTGGTCAGA---
CTCCAGGGGTCAATTGA