Information for 4-TAATTAGCAC (Motif 4)


Reverse Opposite:

p-value:1e-23
log p-value:-5.519e+01
Information Content per bp:1.651
Number of Target Sequences with motif240.0
Percentage of Target Sequences with motif33.06%
Number of Background Sequences with motif8449.6
Percentage of Background Sequences with motif17.35%
Average Position of motif in Targets433.6 +/- 293.8bp
Average Position of motif in Background414.5 +/- 253.4bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.16
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0081.1_Pdx1/Jaspar

Match Rank:1
Score:0.83
Offset:-4
Orientation:forward strand
Alignment:----TAATTAGCAC--
AAGGTAATTAGCTCAT

Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer

Match Rank:2
Score:0.82
Offset:0
Orientation:forward strand
Alignment:TAATTAGCAC
TAATTAGN--

PB0031.1_Hoxa3_1/Jaspar

Match Rank:3
Score:0.82
Offset:-2
Orientation:reverse strand
Alignment:--TAATTAGCAC--
GTTAATTANCTCNN

PH0060.1_Hoxb5/Jaspar

Match Rank:4
Score:0.80
Offset:-4
Orientation:forward strand
Alignment:----TAATTAGCAC--
ACGGTAATTAGCTCAT

PH0131.1_Pax4/Jaspar

Match Rank:5
Score:0.79
Offset:-5
Orientation:forward strand
Alignment:-----TAATTAGCAC--
TGAACTAATTAGCCCAC

PH0052.1_Hoxa5/Jaspar

Match Rank:6
Score:0.79
Offset:-4
Orientation:forward strand
Alignment:----TAATTAGCAC--
ACGGTAATTAGCTCAG

PH0045.1_Hoxa1/Jaspar

Match Rank:7
Score:0.79
Offset:-4
Orientation:reverse strand
Alignment:----TAATTAGCAC--
ACGGTAATTAGCTCAG

PH0050.1_Hoxa3/Jaspar

Match Rank:8
Score:0.78
Offset:-2
Orientation:reverse strand
Alignment:--TAATTAGCAC--
ACTAATTANCNCNA

PH0049.1_Hoxa2/Jaspar

Match Rank:9
Score:0.78
Offset:-4
Orientation:forward strand
Alignment:----TAATTAGCAC--
AAGGTAATTAGCTCAT

PH0036.1_Gsx2/Jaspar

Match Rank:10
Score:0.78
Offset:-4
Orientation:forward strand
Alignment:----TAATTAGCAC--
AGGTTAATTAGCTGAT