Information for 2-GCTGTTGCCAAG (Motif 5)


Reverse Opposite:

p-value:1e-20
log p-value:-4.717e+01
Information Content per bp:1.493
Number of Target Sequences with motif110.0
Percentage of Target Sequences with motif15.15%
Number of Background Sequences with motif2705.8
Percentage of Background Sequences with motif5.56%
Average Position of motif in Targets461.0 +/- 284.9bp
Average Position of motif in Background407.0 +/- 253.4bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.07
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0510.1_RFX5/Jaspar

Match Rank:1
Score:0.76
Offset:0
Orientation:reverse strand
Alignment:GCTGTTGCCAAG---
NCTGTTGCCAGGGAG

Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer

Match Rank:2
Score:0.75
Offset:1
Orientation:reverse strand
Alignment:GCTGTTGCCAAG-
-CTGTTGCTAGGS

Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan et al.)/Homer

Match Rank:3
Score:0.68
Offset:1
Orientation:forward strand
Alignment:GCTGTTGCCAAG
-CTGTTTAC---

MA0600.1_RFX2/Jaspar

Match Rank:4
Score:0.68
Offset:-2
Orientation:reverse strand
Alignment:--GCTGTTGCCAAG-----
NNNCNGTTGCCATGGNAAC

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:5
Score:0.66
Offset:4
Orientation:forward strand
Alignment:GCTGTTGCCAAG
----TTGCCAAG

MA0480.1_Foxo1/Jaspar

Match Rank:6
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-GCTGTTGCCAAG
TCCTGTTTACA--

MA0509.1_Rfx1/Jaspar

Match Rank:7
Score:0.65
Offset:3
Orientation:reverse strand
Alignment:GCTGTTGCCAAG-----
---GTTGCCATGGNAAC

PB0055.1_Rfx4_1/Jaspar

Match Rank:8
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:GCTGTTGCCAAG---
NNCGTTGCTATGGNN

PB0054.1_Rfx3_1/Jaspar

Match Rank:9
Score:0.63
Offset:-4
Orientation:reverse strand
Alignment:----GCTGTTGCCAAG-------
NTNNNNNGTTGCTANGGNNCANA

POL009.1_DCE_S_II/Jaspar

Match Rank:10
Score:0.61
Offset:0
Orientation:forward strand
Alignment:GCTGTTGCCAAG
GCTGTG------