Information for 5-AAATAGCCTG (Motif 9)


Reverse Opposite:

p-value:1e-18
log p-value:-4.195e+01
Information Content per bp:1.539
Number of Target Sequences with motif74.0
Percentage of Target Sequences with motif10.19%
Number of Background Sequences with motif1489.6
Percentage of Background Sequences with motif3.06%
Average Position of motif in Targets477.1 +/- 285.7bp
Average Position of motif in Background424.8 +/- 258.9bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.04
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer

Match Rank:1
Score:0.73
Offset:-5
Orientation:forward strand
Alignment:-----AAATAGCCTG
DCYAAAAATAGM---

Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:2
Score:0.72
Offset:-4
Orientation:forward strand
Alignment:----AAATAGCCTG
CCAAAAATAG----

MA0497.1_MEF2C/Jaspar

Match Rank:3
Score:0.70
Offset:-7
Orientation:forward strand
Alignment:-------AAATAGCCTG
ATGCTAAAAATAGAA--

MA0052.2_MEF2A/Jaspar

Match Rank:4
Score:0.70
Offset:-6
Orientation:forward strand
Alignment:------AAATAGCCTG
AGCTAAAAATAGCAT-

MF0008.1_MADS_class/Jaspar

Match Rank:5
Score:0.58
Offset:-4
Orientation:reverse strand
Alignment:----AAATAGCCTG
CCATATATGG----

MA0042.1_FOXI1/Jaspar

Match Rank:6
Score:0.58
Offset:-4
Orientation:reverse strand
Alignment:----AAATAGCCTG
AAACAAACANNC--

PB0146.1_Mafk_2/Jaspar

Match Rank:7
Score:0.58
Offset:-4
Orientation:forward strand
Alignment:----AAATAGCCTG-
GAAAAAATTGCAAGG

MF0005.1_Forkhead_class/Jaspar

Match Rank:8
Score:0.57
Offset:-4
Orientation:reverse strand
Alignment:----AAATAGCCTG
AAATAAACA-----

PB0135.1_Hoxa3_2/Jaspar

Match Rank:9
Score:0.55
Offset:-3
Orientation:reverse strand
Alignment:---AAATAGCCTG-
CCTTAATNGNTTTT

MA0033.1_FOXL1/Jaspar

Match Rank:10
Score:0.54
Offset:-3
Orientation:forward strand
Alignment:---AAATAGCCTG
TATACATA-----