Motif Name	Consensus	P-value	Log P-value	q-value (Benjamini)	# of Target Sequences with Motif(of 726)	% of Target Sequences with Motif	# of Background Sequences with Motif(of 48668)	% of Background Sequences with Motif
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	GATGASTCATCN	1e-52	-1.198e+02	0.0000	194.0	26.72%	3801.0	7.81%
Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer	NATGASTCABNN	1e-47	-1.093e+02	0.0000	224.0	30.85%	5294.9	10.87%
Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer	NNATGASTCATH	1e-42	-9.867e+01	0.0000	294.0	40.50%	8957.2	18.39%
Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	DATGASTCATHN	1e-37	-8.595e+01	0.0000	313.0	43.11%	10570.0	21.71%
BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	DATGASTCAT	1e-34	-7.926e+01	0.0000	311.0	42.84%	10826.2	22.23%
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1e-32	-7.444e+01	0.0000	326.0	44.90%	11934.8	24.51%
Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer	GTTGCCATGGCAACM	1e-19	-4.495e+01	0.0000	74.0	10.19%	1409.8	2.90%
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1e-19	-4.396e+01	0.0000	120.0	16.53%	3251.7	6.68%
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer	YTGCCAAG	1e-17	-3.928e+01	0.0000	496.0	68.32%	25664.5	52.70%
RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer	CGGTTGCCATGGCAAC	1e-17	-3.927e+01	0.0000	66.0	9.09%	1279.5	2.63%
X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	GGTTGCCATGGCAA	1e-12	-2.947e+01	0.0000	73.0	10.06%	1860.4	3.82%
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1e-12	-2.868e+01	0.0000	183.0	25.21%	7263.8	14.92%
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer	CYAAAAATAG	1e-11	-2.556e+01	0.0000	167.0	23.00%	6657.5	13.67%
Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	KGTTGCCATGGCAA	1e-10	-2.517e+01	0.0000	105.0	14.46%	3508.8	7.21%
NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	GATGACTCAGCA	1e-9	-2.298e+01	0.0000	43.0	5.92%	917.0	1.88%
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1e-8	-2.046e+01	0.0000	41.0	5.65%	923.0	1.90%
Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer	NGCGTGGGCGGR	1e-8	-2.006e+01	0.0000	70.0	9.64%	2159.0	4.43%
Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer	TGCGTGGGYG	1e-8	-2.005e+01	0.0000	222.0	30.58%	10314.8	21.18%
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer	VNRVCAGCTGGY	1e-6	-1.561e+01	0.0000	344.0	47.38%	18508.4	38.01%
NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer	CYTGGCABNSTGCCAR	1e-6	-1.466e+01	0.0000	139.0	19.15%	6154.3	12.64%
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1e-5	-1.340e+01	0.0000	31.0	4.27%	783.4	1.61%
TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer	YCWGGAATGY	1e-5	-1.231e+01	0.0001	215.0	29.61%	10934.9	22.46%
MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	RRCAGCTGYTSY	1e-5	-1.213e+01	0.0001	245.0	33.75%	12809.6	26.30%
Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer	VCAGCTGYTG	1e-5	-1.168e+01	0.0001	287.0	39.53%	15530.3	31.89%
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	CTGGCAGSCTGCCA	1e-5	-1.167e+01	0.0001	158.0	21.76%	7616.4	15.64%
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1e-4	-1.143e+01	0.0001	420.0	57.85%	24308.0	49.92%
NFAT:AP1(RHD,bZIP)/Jurkat-NFATC1-ChIP-Seq(Jolma et al.)/Homer	SARTGGAAAAWRTGAGTCAB	1e-4	-9.691e+00	0.0006	71.0	9.78%	2948.5	6.05%
Brachyury(T-box)/Mesoendoderm-Brachyury-ChIP-exo(GSE54963)/Homer	ANTTMRCASBNNNGTGYKAAN	1e-4	-9.654e+00	0.0006	116.0	15.98%	5453.8	11.20%
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1e-3	-8.540e+00	0.0018	274.0	37.74%	15325.3	31.47%
Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAW	1e-3	-8.026e+00	0.0029	149.0	20.52%	7643.3	15.70%
MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer	GCTGASTCAGCA	1e-3	-7.678e+00	0.0039	94.0	12.95%	4459.3	9.16%
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1e-3	-7.411e+00	0.0050	215.0	29.61%	11828.1	24.29%
STAT6(Stat)/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer	TTCCKNAGAA	1e-3	-6.936e+00	0.0078	178.0	24.52%	9621.2	19.76%
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer	CCWGGAATGY	1e-3	-6.912e+00	0.0078	246.0	33.88%	13905.4	28.56%
MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1e-2	-6.531e+00	0.0110	294.0	40.50%	17095.0	35.11%
HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer	TTCTAGAABNTTCTA	1e-2	-6.187e+00	0.0151	91.0	12.53%	4505.6	9.25%
HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer	BSTTCTRGAABVTTCYAGAA	1e-2	-6.179e+00	0.0151	63.0	8.68%	2899.8	5.95%
Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer	YCTTTGTTCC	1e-2	-6.059e+00	0.0162	252.0	34.71%	14502.0	29.78%
Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer	NNVVCAGCTGBN	1e-2	-6.033e+00	0.0162	392.0	53.99%	23712.7	48.69%
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	MTGATGCAAT	1e-2	-5.979e+00	0.0167	79.0	10.88%	3839.5	7.88%
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer	TAATTAGN	1e-2	-5.923e+00	0.0172	289.0	39.81%	16933.1	34.77%
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1e-2	-5.750e+00	0.0200	493.0	67.91%	30674.5	62.99%
GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer	VAGRACAKWCTGTYC	1e-2	-5.691e+00	0.0207	94.0	12.95%	4763.5	9.78%
TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer	CCWGGAATGY	1e-2	-5.439e+00	0.0261	160.0	22.04%	8832.0	18.14%
CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan et al.)/Homer	CCATATATGGNM	1e-2	-5.355e+00	0.0277	98.0	13.50%	5060.3	10.39%
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1e-2	-5.318e+00	0.0281	539.0	74.24%	34004.5	69.83%
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski et al.)/Homer	GCTGTGGTTW	1e-2	-5.306e+00	0.0281	232.0	31.96%	13419.6	27.56%
GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer	NRGVACABNVTGTYCY	1e-2	-5.300e+00	0.0281	60.0	8.26%	2846.9	5.85%
Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer	ATTAACACCT	1e-2	-4.773e+00	0.0456	484.0	66.67%	30353.4	62.33%
Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer	CCWTTGTYYB	1e-2	-4.650e+00	0.0505	413.0	56.89%	25557.8	52.48%
Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer	GKVTCADRTTWC	1e-1	-4.569e+00	0.0537	79.0	10.88%	4070.9	8.36%
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer	BCCATTGTTC	1e-1	-4.563e+00	0.0537	254.0	34.99%	15056.1	30.92%
Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1e-1	-4.505e+00	0.0551	343.0	47.25%	20920.9	42.96%
STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer	NYTTCCWGGAAR	1e-1	-4.353e+00	0.0629	268.0	36.91%	16034.5	32.93%
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	1e-1	-4.150e+00	0.0757	426.0	58.68%	26610.9	54.65%
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma et al.)/Homer	ATTTTCCATT	1e-1	-4.045e+00	0.0825	237.0	32.64%	14119.6	28.99%
Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer	CCATTGTATGCAAAT	1e-1	-3.949e+00	0.0893	48.0	6.61%	2353.9	4.83%
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1e-1	-3.851e+00	0.0968	134.0	18.46%	7601.6	15.61%
Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGCATAATTCA	1e-1	-3.850e+00	0.0968	100.0	13.77%	5489.6	11.27%
CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	NTNATGCAAYMNNHTGMAAY	1e-1	-3.796e+00	0.0988	44.0	6.06%	2145.1	4.41%
AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	TGGCAGTTGG	1e-1	-3.712e+00	0.1057	395.0	54.41%	24682.9	50.69%
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer	NRAACCRGTTYRAACCRGYT	1e-1	-3.549e+00	0.1224	54.0	7.44%	2769.0	5.69%
Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer	ATATGCAAAT	1e-1	-3.492e+00	0.1276	89.0	12.26%	4896.0	10.05%
EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer	DGTCCCYRGGGA	1e-1	-3.458e+00	0.1298	67.0	9.23%	3563.4	7.32%
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1e-1	-3.336e+00	0.1444	76.0	10.47%	4135.8	8.49%
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1e-1	-3.287e+00	0.1495	411.0	56.61%	25929.7	53.25%
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1e-1	-3.285e+00	0.1495	193.0	26.58%	11531.5	23.68%
GATA(Zf),IR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NAGATWNBNATCTNN	1e-1	-3.193e+00	0.1593	27.0	3.72%	1259.3	2.59%
p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer	NNDRCATGYCYNRRCATGYH	1e-1	-3.193e+00	0.1593	117.0	16.12%	6715.7	13.79%
Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo et al.)/Homer	TBGCACGCAA	1e-1	-3.149e+00	0.1617	175.0	24.10%	10419.9	21.40%
ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer	AGGAARCAGCTG	1e-1	-3.147e+00	0.1617	37.0	5.10%	1838.3	3.78%
Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer	RTCACSCCAY	1e-1	-3.072e+00	0.1699	63.0	8.68%	3401.2	6.98%
Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer	CVGTSCTCCC	1e-1	-3.067e+00	0.1699	437.0	60.19%	27779.3	57.05%
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	1e-1	-3.001e+00	0.1774	342.0	47.11%	21426.2	44.00%
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1e-1	-2.859e+00	0.2018	27.0	3.72%	1303.2	2.68%
CEBP(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1e-1	-2.810e+00	0.2090	158.0	21.76%	9445.7	19.40%
STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer	RTTTCTNAGAAA	1e-1	-2.809e+00	0.2090	106.0	14.60%	6134.2	12.60%
Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer	NNNCTTTCCAGGAAA	1e-1	-2.773e+00	0.2114	359.0	49.45%	22662.5	46.54%
Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	CACAGCAGGGGG	1e-1	-2.767e+00	0.2114	173.0	23.83%	10427.1	21.41%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e-1	-2.688e+00	0.2244	43.0	5.92%	2271.7	4.67%
Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer	SSCMATWAAA	1e-1	-2.596e+00	0.2431	182.0	25.07%	11075.6	22.74%
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCAT	1e-1	-2.580e+00	0.2440	56.0	7.71%	3082.4	6.33%
OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAACAATG	1e-1	-2.557e+00	0.2467	55.0	7.58%	3026.8	6.22%
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1e-1	-2.490e+00	0.2606	238.0	32.78%	14775.0	30.34%
Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer	CTTCCGGGAA	1e-1	-2.447e+00	0.2689	146.0	20.11%	8806.8	18.08%
RBPJ:Ebox(?,bHLH)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	GGGRAARRGRMCAGMTG	1e-1	-2.437e+00	0.2689	105.0	14.46%	6186.9	12.70%
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1e-1	-2.433e+00	0.2689	59.0	8.13%	3301.7	6.78%
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	1e-1	-2.393e+00	0.2740	98.0	13.50%	5756.8	11.82%
STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer	ABTTCYYRRGAA	1e-1	-2.387e+00	0.2740	156.0	21.49%	9474.9	19.46%
Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer	AGGTGTGAAM	1e-1	-2.385e+00	0.2740	271.0	37.33%	16997.1	34.90%
EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	AVCAGGAAGT	1e-1	-2.317e+00	0.2859	348.0	47.93%	22147.2	45.48%
ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer	AGTTTCASTTTC	1e0	-2.245e+00	0.3040	18.0	2.48%	870.8	1.79%
PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1e0	-2.237e+00	0.3040	154.0	21.21%	9405.3	19.31%
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1e0	-2.195e+00	0.3129	421.0	57.99%	27111.6	55.67%
PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer	ACCRTGACTAATTNN	1e0	-2.158e+00	0.3210	62.0	8.54%	3558.7	7.31%
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer	GKTAATGR	1e0	-2.077e+00	0.3446	506.0	69.70%	32936.0	67.63%
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer	SCTGTCAMTCAN	1e0	-2.069e+00	0.3446	76.0	10.47%	4465.6	9.17%
Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer	AGGTGHCAGACA	1e0	-2.037e+00	0.3513	61.0	8.40%	3529.4	7.25%
PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GTCACGCTCSCTGM	1e0	-2.029e+00	0.3513	31.0	4.27%	1676.0	3.44%
Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer	NNNVCTGWGYAAACASN	1e0	-2.007e+00	0.3548	295.0	40.63%	18780.8	38.57%
CHR(?)/Hela-CellCycle-Expression/Homer	SRGTTTCAAA	1e0	-1.987e+00	0.3585	166.0	22.87%	10293.2	21.14%
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer	YCATYAATCA	1e0	-1.909e+00	0.3838	241.0	33.20%	15256.6	31.33%
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1e0	-1.903e+00	0.3838	70.0	9.64%	4137.5	8.50%
SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	AVCAGCTG	1e0	-1.830e+00	0.4074	678.0	93.39%	44966.8	92.34%
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan et al.)/Homer	CTGTTTAC	1e0	-1.825e+00	0.4074	441.0	60.74%	28666.2	58.87%
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer	MAATCACTGC	1e0	-1.809e+00	0.4079	181.0	24.93%	11359.8	23.33%
NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WNTGTTTRYTTTGGCA	1e0	-1.797e+00	0.4091	17.0	2.34%	875.9	1.80%
ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	ACAGGAAGTG	1e0	-1.755e+00	0.4228	399.0	54.96%	25879.1	53.14%
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski et al.)/Homer	MACAGGAAGT	1e0	-1.694e+00	0.4451	98.0	13.50%	6006.4	12.33%
Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer	SVYTTCCNGGAARB	1e0	-1.671e+00	0.4511	203.0	27.96%	12878.9	26.45%
IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	GAAAGTGAAAGT	1e0	-1.596e+00	0.4821	38.0	5.23%	2206.4	4.53%
Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer	ASWTCAAAGG	1e0	-1.573e+00	0.4888	79.0	10.88%	4828.8	9.92%
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer	WGGGGATTTCCC	1e0	-1.540e+00	0.5009	130.0	17.91%	8156.0	16.75%
E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer	DNRCAGCTGY	1e0	-1.531e+00	0.5010	342.0	47.11%	22200.1	45.59%
Pax7(Paired,Homeobox),long/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCHGATTAC	1e0	-1.508e+00	0.5082	7.0	0.96%	329.0	0.68%
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	1e0	-1.489e+00	0.5133	18.0	2.48%	987.5	2.03%
Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer	CGGTCACSCCAC	1e0	-1.440e+00	0.5344	36.0	4.96%	2122.9	4.36%
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1e0	-1.365e+00	0.5712	414.0	57.02%	27144.0	55.74%
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	ATTTCCTGTN	1e0	-1.332e+00	0.5855	203.0	27.96%	13080.4	26.86%
bZIP:IRF(bZIP,IRF)/Th17-BatF-ChIP-Seq(GSE39756)/Homer	NAGTTTCABTHTGACTNW	1e0	-1.305e+00	0.5969	132.0	18.18%	8409.5	17.27%
Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGMATATDC	1e0	-1.302e+00	0.5969	267.0	36.78%	17352.4	35.63%
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	1e0	-1.229e+00	0.6331	376.0	51.79%	24693.9	50.71%
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1e0	-1.216e+00	0.6361	159.0	21.90%	10242.9	21.03%
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1e0	-1.208e+00	0.6362	25.0	3.44%	1487.3	3.05%
IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	ACTGAAACCA	1e0	-1.202e+00	0.6362	112.0	15.43%	7150.8	14.68%
ETS:RUNX(ETS,Runt)/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer	RCAGGATGTGGT	1e0	-1.192e+00	0.6362	26.0	3.58%	1555.5	3.19%
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1e0	-1.188e+00	0.6362	26.0	3.58%	1556.1	3.20%
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer	ADBTAATTAR	1e0	-1.124e+00	0.6706	365.0	50.28%	24039.9	49.37%
BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer	NHAACBGYYV	1e0	-1.119e+00	0.6706	363.0	50.00%	23909.4	49.10%
EBNA1(EBV virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	1e0	-1.075e+00	0.6928	6.0	0.83%	319.2	0.66%
CTCF-SatelliteElement(Zf?)/CD4+-CTCF-ChIP-Seq(Barski et al.)/Homer	TGCAGTTCCMVNWRTGGCCA	1e0	-1.047e+00	0.7077	8.0	1.10%	447.4	0.92%
GFY(?)/Promoter/Homer	ACTACAATTCCC	1e0	-9.924e-01	0.7414	15.0	2.07%	902.5	1.85%
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1e0	-9.892e-01	0.7414	61.0	8.40%	3906.4	8.02%
p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer	RRCATGYCYRGRCATGYYYN	1e0	-9.620e-01	0.7472	31.0	4.27%	1949.0	4.00%
p53(p53)/Saos-p53-ChIP-Seq/Homer	RRCATGYCYRGRCATGYYYN	1e0	-9.620e-01	0.7472	31.0	4.27%	1949.0	4.00%
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	1e0	-9.588e-01	0.7472	200.0	27.55%	13148.9	27.00%
Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer	ASATCAAAGGVA	1e0	-9.468e-01	0.7477	133.0	18.32%	8697.3	17.86%
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1e0	-9.309e-01	0.7541	648.0	89.26%	43270.0	88.86%
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	VACAGGAAAT	1e0	-9.303e-01	0.7541	163.0	22.45%	10705.4	21.98%
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer	GGCCATAAATCA	1e0	-9.009e-01	0.7660	130.0	17.91%	8531.0	17.52%
LXRE(NR),DR4/RAW-LXRb.biotin-ChIP-Seq(GSE21512)/Homer	RGGTTACTANAGGTCA	1e0	-8.784e-01	0.7778	14.0	1.93%	865.5	1.78%
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer	NATTTCCNGGAAAT	1e0	-7.749e-01	0.8566	79.0	10.88%	5219.5	10.72%
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1e0	-7.471e-01	0.8746	2.0	0.28%	107.4	0.22%
Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer	BBCTTATCTS	1e0	-7.461e-01	0.8746	164.0	22.59%	10924.3	22.43%
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	1e0	-6.839e-01	0.9188	139.0	19.15%	9305.1	19.11%
EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer	GTCCCCWGGGGA	1e0	-6.364e-01	0.9569	255.0	35.12%	17137.7	35.19%
NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer	GGAAATTCCC	1e0	-6.200e-01	0.9661	13.0	1.79%	872.3	1.79%
Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer	SAGATAAGRV	1e0	-6.117e-01	0.9676	145.0	19.97%	9776.9	20.08%
GATA:SCL(Zf,bHLH)/Ter119-SCL-ChIP-Seq(GSE18720)/Homer	CRGCTGBNGNSNNSAGATAA	1e0	-5.653e-01	1.0000	31.0	4.27%	2119.4	4.35%
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	TGACCTTTNCNT	1e0	-5.607e-01	1.0000	49.0	6.75%	3344.2	6.87%
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	1e0	-5.299e-01	1.0000	124.0	17.08%	8444.1	17.34%
AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer	SCCTSAGGSCAW	1e0	-5.268e-01	1.0000	225.0	30.99%	15254.8	31.33%
GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer	CGTGGGTGGTCC	1e0	-5.218e-01	1.0000	31.0	4.27%	2143.5	4.40%
NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber et al.)/Homer	GGGGGAATCCCC	1e0	-5.165e-01	1.0000	22.0	3.03%	1529.6	3.14%
Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer	YTAATYNRATTA	1e0	-4.729e-01	1.0000	86.0	11.85%	5928.9	12.18%
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	1e0	-4.559e-01	1.0000	340.0	46.83%	23081.9	47.40%
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer	CTAATKGV	1e0	-4.521e-01	1.0000	416.0	57.30%	28179.5	57.87%
GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer	AAACYKGTTWDACMRGTTTB	1e0	-4.498e-01	1.0000	102.0	14.05%	7039.0	14.45%
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	1e0	-4.468e-01	1.0000	107.0	14.74%	7382.6	15.16%
E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer	CWGGCGGGAA	1e0	-4.256e-01	1.0000	27.0	3.72%	1925.7	3.95%
Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer	NYTAATCCYB	1e0	-3.927e-01	1.0000	207.0	28.51%	14228.6	29.22%
Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer	NBWGATAAGR	1e0	-3.913e-01	1.0000	238.0	32.78%	16323.2	33.52%
Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer	GCCACACCCA	1e0	-3.741e-01	1.0000	84.0	11.57%	5896.9	12.11%
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NWGGGTGTGGCY	1e0	-3.719e-01	1.0000	52.0	7.16%	3698.4	7.59%
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	ATGACGTCATCY	1e0	-3.668e-01	1.0000	68.0	9.37%	4806.9	9.87%
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer	ASWTCCTGBT	1e0	-3.580e-01	1.0000	264.0	36.36%	18132.4	37.24%
FOXA1:AR(Forkhead,NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	AGTAAACAAAAAAGAACAND	1e0	-3.533e-01	1.0000	21.0	2.89%	1551.3	3.19%
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	ACAGGAAGTG	1e0	-3.489e-01	1.0000	266.0	36.64%	18283.8	37.55%
Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1e0	-3.301e-01	1.0000	70.0	9.64%	4985.7	10.24%
ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer	AGGCCTAG	1e0	-3.274e-01	1.0000	361.0	49.72%	24709.7	50.74%
HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer	GGCCATAAATCA	1e0	-3.253e-01	1.0000	157.0	21.63%	10946.2	22.48%
Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer	AGGTGTCA	1e0	-3.228e-01	1.0000	575.0	79.20%	38960.7	80.01%
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1e0	-3.160e-01	1.0000	240.0	33.06%	16589.4	34.07%
Atf2(bZIP)/3T3L1-Atf2-ChIP-Seq(GSE56872)/Homer	NRRTGACGTCAT	1e0	-3.106e-01	1.0000	77.0	10.61%	5492.7	11.28%
T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer	ACTTTCGTTTCT	1e0	-3.041e-01	1.0000	2.0	0.28%	176.9	0.36%
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer	CYTGTTTACWYW	1e0	-3.020e-01	1.0000	204.0	28.10%	14179.4	29.12%
Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer	ACAGCTGTTN	1e0	-3.004e-01	1.0000	529.0	72.87%	35958.7	73.84%
E-box(bHLH)/Promoter/Homer	SSGGTCACGTGA	1e0	-2.964e-01	1.0000	13.0	1.79%	1013.6	2.08%
GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer	RGGATTAR	1e0	-2.808e-01	1.0000	286.0	39.39%	19765.0	40.59%
AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer	ATGCCCTGAGGC	1e0	-2.664e-01	1.0000	168.0	23.14%	11800.5	24.23%
CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer	GCTAATCC	1e0	-2.649e-01	1.0000	485.0	66.80%	33111.5	68.00%
Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer	VGCTGWCAVB	1e0	-2.607e-01	1.0000	395.0	54.41%	27125.9	55.70%
HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer	GCACGTACCC	1e0	-2.352e-01	1.0000	74.0	10.19%	5391.4	11.07%
HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer	TACGTGCV	1e0	-2.272e-01	1.0000	49.0	6.75%	3651.1	7.50%
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1e0	-2.174e-01	1.0000	253.0	34.85%	17683.3	36.31%
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1e0	-2.137e-01	1.0000	40.0	5.51%	3031.9	6.23%
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1e0	-2.114e-01	1.0000	571.0	78.65%	38899.7	79.88%
HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer	RTACGTGC	1e0	-1.967e-01	1.0000	238.0	32.78%	16721.2	34.34%
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	AAACCACARM	1e0	-1.889e-01	1.0000	277.0	38.15%	19383.5	39.80%
NFY(CCAAT)/Promoter/Homer	RGCCAATSRG	1e0	-1.842e-01	1.0000	189.0	26.03%	13420.3	27.56%
PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GCAGCCAAGCRTGACH	1e0	-1.773e-01	1.0000	89.0	12.26%	6543.4	13.44%
bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer	KCACGTGMCN	1e0	-1.757e-01	1.0000	64.0	8.82%	4792.9	9.84%
E2F(E2F)/Hela-CellCycle-Expression/Homer	TTSGCGCGAAAA	1e0	-1.665e-01	1.0000	4.0	0.55%	400.8	0.82%
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1e0	-1.627e-01	1.0000	90.0	12.40%	6645.9	13.65%
Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer	GTCATGCHTGRCTGS	1e0	-1.561e-01	1.0000	84.0	11.57%	6240.1	12.81%
GATA(Zf),IR3/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NNNNNBAGATAWYATCTVHN	1e0	-1.525e-01	1.0000	28.0	3.86%	2250.6	4.62%
Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer	ACTYKNATTCGTGNTACTTC	1e0	-1.440e-01	1.0000	15.0	2.07%	1291.2	2.65%
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	1e0	-1.433e-01	1.0000	30.0	4.13%	2411.6	4.95%
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	1e0	-1.424e-01	1.0000	149.0	20.52%	10795.2	22.17%
SpiB(ETS)/OCILY3-SPIB-ChIP-Seq(GSE56857)/Homer	AAAGRGGAAGTG	1e0	-1.420e-01	1.0000	55.0	7.58%	4220.8	8.67%
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1e0	-1.385e-01	1.0000	500.0	68.87%	34434.4	70.71%
Atf7(bZIP)/3T3L1-Atf7-ChIP-Seq(GSE56872)/Homer	NGRTGACGTCAY	1e0	-1.380e-01	1.0000	106.0	14.60%	7825.3	16.07%
RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	SAAACCACAG	1e0	-1.311e-01	1.0000	196.0	27.00%	14063.0	28.88%
TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer	ACWTCAAAGG	1e0	-1.273e-01	1.0000	20.0	2.75%	1693.4	3.48%
MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer	RTCATGTGAC	1e0	-1.267e-01	1.0000	211.0	29.06%	15105.0	31.02%
HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer	NCYAATAAAA	1e0	-1.255e-01	1.0000	250.0	34.44%	17765.9	36.48%
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	1e0	-1.215e-01	1.0000	268.0	36.91%	19002.2	39.02%
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	RGCCATTAAC	1e0	-1.197e-01	1.0000	640.0	88.15%	43570.6	89.47%
Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer	TAATCCCN	1e0	-1.121e-01	1.0000	649.0	89.39%	44158.4	90.68%
p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	ACATGCCCGGGCAT	1e0	-9.574e-02	1.0000	2.0	0.28%	268.8	0.55%
Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer	RRSCACTYAA	1e0	-9.464e-02	1.0000	487.0	67.08%	33751.7	69.31%
ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	AACCGGAAGT	1e0	-9.430e-02	1.0000	326.0	44.90%	23042.8	47.32%
Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer	GGTTAAWCATTAA	1e0	-9.109e-02	1.0000	25.0	3.44%	2137.2	4.39%
Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer	GTRGGTCASTGGGTCA	1e0	-9.061e-02	1.0000	30.0	4.13%	2514.0	5.16%
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	RACCGGAAGT	1e0	-8.852e-02	1.0000	219.0	30.17%	15816.0	32.48%
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer	WAAGTAAACA	1e0	-6.900e-02	1.0000	248.0	34.16%	17905.6	36.77%
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1e0	-5.714e-02	1.0000	100.0	13.77%	7713.8	15.84%
PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer	RGGTCTCTAACY	1e0	-4.297e-02	1.0000	73.0	10.06%	5861.4	12.04%
GATA3(Zf),DR8/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATSTNDNNDSAGATAASN	1e0	-3.728e-02	1.0000	24.0	3.31%	2229.2	4.58%
ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer	VAGGTCACNSTGACC	1e0	-3.119e-02	1.0000	61.0	8.40%	5067.4	10.41%
USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	SGTCACGTGR	1e0	-2.547e-02	1.0000	89.0	12.26%	7166.1	14.72%
BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer	GNCACGTG	1e0	-2.538e-02	1.0000	409.0	56.34%	29141.4	59.84%
Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer	RSCACTYRAG	1e0	-2.499e-02	1.0000	556.0	76.58%	38712.2	79.50%
CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	GHCACGTG	1e0	-2.495e-02	1.0000	116.0	15.98%	9112.9	18.71%
c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer	VCCACGTG	1e0	-2.241e-02	1.0000	78.0	10.74%	6400.8	13.14%
GATA3(Zf),DR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATGKDGAGATAAG	1e0	-1.805e-02	1.0000	13.0	1.79%	1443.2	2.96%
Pax7(Paired,Homeobox),longest/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	NTAATTDGCYAATTANNWWD	1e0	-1.803e-02	1.0000	3.0	0.41%	512.3	1.05%
ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer	AGGCCTRG	1e0	-1.724e-02	1.0000	300.0	41.32%	21989.2	45.16%
NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer	CTGCGCATGCGC	1e0	-1.724e-02	1.0000	10.0	1.38%	1187.5	2.44%
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson et al.)/Homer	GYCATCMATCAT	1e0	-1.682e-02	1.0000	22.0	3.03%	2203.8	4.53%
HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer	CARRGKBCAAAGTYCA	1e0	-1.667e-02	1.0000	119.0	16.39%	9446.8	19.40%
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1e0	-1.644e-02	1.0000	283.0	38.98%	20853.1	42.82%
BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer	CNNBRGCGCCCCCTGSTGGC	1e0	-1.540e-02	1.0000	49.0	6.75%	4330.9	8.89%
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1e0	-1.493e-02	1.0000	115.0	15.84%	9191.8	18.88%
CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski et al.)/Homer	AYAGTGCCMYCTRGTGGCCA	1e0	-1.125e-02	1.0000	37.0	5.10%	3467.7	7.12%
KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer	DGGGYGKGGC	1e0	-1.090e-02	1.0000	234.0	32.23%	17642.7	36.23%
FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong et al.)/Homer	AGGTCANTGACCTB	1e0	-1.064e-02	1.0000	76.0	10.47%	6439.0	13.22%
n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	VRCCACGTGG	1e0	-9.935e-03	1.0000	172.0	23.69%	13359.8	27.43%
NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer	KCCACGTGAC	1e0	-9.359e-03	1.0000	245.0	33.75%	18449.8	37.89%
THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1e0	-8.150e-03	1.0000	89.0	12.26%	7462.2	15.32%
c-Myc(bHLH)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	VVCCACGTGG	1e0	-8.118e-03	1.0000	129.0	17.77%	10366.7	21.29%
RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer	TAGGGCAAAGGTCA	1e0	-6.246e-03	1.0000	253.0	34.85%	19128.3	39.28%
Max(bHLH)/K562-Max-ChIP-Seq(GSE31477)/Homer	RCCACGTGGYYN	1e0	-5.440e-03	1.0000	176.0	24.24%	13819.0	28.38%
ETS(ETS)/Promoter/Homer	AACCGGAAGT	1e0	-4.832e-03	1.0000	61.0	8.40%	5485.9	11.27%
YY1(Zf)/Promoter/Homer	CAAGATGGCGGC	1e0	-4.790e-03	1.0000	9.0	1.24%	1242.2	2.55%
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	1e0	-4.131e-03	1.0000	117.0	16.12%	9677.3	19.87%
GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATAASR	1e0	-3.449e-03	1.0000	306.0	42.15%	22923.4	47.07%
NRF(NRF)/Promoter/Homer	STGCGCATGCGC	1e0	-2.041e-03	1.0000	21.0	2.89%	2427.0	4.98%
HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer	NTATYGATCH	1e0	-1.608e-03	1.0000	97.0	13.36%	8428.7	17.31%
VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer	ARAGGTCANWGAGTTCANNN	1e0	-1.373e-03	1.0000	38.0	5.23%	3906.3	8.02%
Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer	GYMATAAAAH	1e0	-1.218e-03	1.0000	147.0	20.25%	12148.5	24.95%
Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer	BTCAAGGTCA	1e0	-9.580e-04	1.0000	128.0	17.63%	10827.8	22.24%
E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	NVCACCTGBN	1e0	-2.640e-04	1.0000	290.0	39.94%	22528.6	46.26%
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	AVCCGGAAGT	1e0	-2.470e-04	1.0000	92.0	12.67%	8433.6	17.32%
Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer	KTGACCTTGA	1e0	-2.210e-04	1.0000	141.0	19.42%	12099.7	24.85%
PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer	TGACCTTTGCCCCA	1e0	-1.850e-04	1.0000	207.0	28.51%	16868.0	34.64%
GFY-Staf(?,Zf)/Promoter/Homer	RACTACAATTCCCAGAAKGC	1e0	-1.300e-04	1.0000	9.0	1.24%	1606.4	3.30%
Pax7(Paired,Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCAATTA	1e0	-1.000e-04	1.0000	8.0	1.10%	1523.4	3.13%
Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer	BTCAAGGTCA	1e0	-2.300e-05	1.0000	160.0	22.04%	13944.5	28.64%
RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer	AGGTCAAGGTCA	1e0	-1.000e-05	1.0000	11.0	1.52%	2061.5	4.23%
TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer	GAGGTCAAAGGTCA	1e0	-7.000e-06	1.0000	15.0	2.07%	2506.0	5.15%
Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer	CAAAGGTCAG	1e0	-0.000e+00	1.0000	404.0	55.65%	32122.1	65.96%
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1e0	0.000e+00	1.0000	0.0	0.00%	71.1	0.15%
ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer	GGVTCTCGCGAGAAC	1e0	0.000e+00	1.0000	0.0	0.00%	234.0	0.48%