Motif Name	Consensus	P-value	Log P-value	q-value (Benjamini)	# of Target Sequences with Motif(of 2570)	% of Target Sequences with Motif	# of Background Sequences with Motif(of 37621)	% of Background Sequences with Motif
Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer	GTTGCCATGGCAACM	1e-19	-4.490e+01	0.0000	239.0	9.30%	1854.7	4.93%
RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer	CGGTTGCCATGGCAAC	1e-18	-4.276e+01	0.0000	230.0	8.95%	1791.3	4.76%
X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	GGTTGCCATGGCAA	1e-12	-2.873e+01	0.0000	189.0	7.35%	1582.6	4.21%
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1e-12	-2.828e+01	0.0000	308.0	11.98%	2976.0	7.91%
Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	KGTTGCCATGGCAA	1e-11	-2.594e+01	0.0000	332.0	12.91%	3332.9	8.86%
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer	CYAAAAATAG	1e-10	-2.346e+01	0.0000	307.0	11.94%	3096.5	8.23%
NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer	CTGCGCATGCGC	1e-8	-2.038e+01	0.0000	634.0	24.66%	7463.1	19.84%
BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer	CNNBRGCGCCCCCTGSTGGC	1e-6	-1.594e+01	0.0000	626.0	24.35%	7579.9	20.15%
NRF(NRF)/Promoter/Homer	STGCGCATGCGC	1e-6	-1.527e+01	0.0000	605.0	23.53%	7329.1	19.48%
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1e-5	-1.291e+01	0.0001	38.0	1.48%	238.0	0.63%
Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer	NGCGTGGGCGGR	1e-5	-1.211e+01	0.0001	634.0	24.66%	7915.2	21.04%
CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski et al.)/Homer	AYAGTGCCMYCTRGTGGCCA	1e-4	-1.076e+01	0.0005	279.0	10.85%	3197.4	8.50%
Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAW	1e-4	-1.005e+01	0.0009	276.0	10.74%	3191.5	8.48%
Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer	TGCGTGGGYG	1e-3	-8.944e+00	0.0025	1491.0	57.99%	20462.9	54.40%
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer	GKTAATGR	1e-3	-8.117e+00	0.0053	1188.0	46.21%	16111.5	42.83%
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1e-3	-7.910e+00	0.0061	392.0	15.25%	4869.9	12.95%
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1e-3	-7.761e+00	0.0066	267.0	10.39%	3190.2	8.48%
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer	CTAATKGV	1e-3	-7.059e+00	0.0126	1199.0	46.64%	16380.9	43.55%
Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo et al.)/Homer	TBGCACGCAA	1e-2	-6.588e+00	0.0191	1021.0	39.71%	13855.5	36.83%
HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer	GCACGTACCC	1e-2	-6.334e+00	0.0234	585.0	22.75%	7670.2	20.39%
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	1e-2	-6.306e+00	0.0234	1142.0	44.42%	15636.7	41.57%
STAT6(Stat)/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer	TTCCKNAGAA	1e-2	-6.188e+00	0.0247	393.0	15.29%	5007.4	13.31%
STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer	ABTTCYYRRGAA	1e-2	-6.029e+00	0.0276	371.0	14.43%	4716.7	12.54%
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer	ADBTAATTAR	1e-2	-5.936e+00	0.0291	832.0	32.36%	11213.9	29.81%
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1e-2	-5.892e+00	0.0292	402.0	15.64%	5155.3	13.70%
Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGCATAATTCA	1e-2	-5.834e+00	0.0297	167.0	6.50%	1967.2	5.23%
Brachyury(T-box)/Mesoendoderm-Brachyury-ChIP-exo(GSE54963)/Homer	ANTTMRCASBNNNGTGYKAAN	1e-2	-5.542e+00	0.0383	216.0	8.40%	2637.2	7.01%
HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer	RTACGTGC	1e-2	-5.136e+00	0.0555	1423.0	55.35%	19881.4	52.85%
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer	YCATYAATCA	1e-2	-5.034e+00	0.0593	506.0	19.68%	6684.9	17.77%
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer	TAATTAGN	1e-2	-4.853e+00	0.0687	553.0	21.51%	7365.8	19.58%
E-box(bHLH)/Promoter/Homer	SSGGTCACGTGA	1e-2	-4.812e+00	0.0693	170.0	6.61%	2064.1	5.49%
OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAACAATG	1e-2	-4.611e+00	0.0820	93.0	3.62%	1059.0	2.82%
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	1e-1	-4.381e+00	0.1001	543.0	21.12%	7275.1	19.34%
Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer	ATATGCAAAT	1e-1	-4.324e+00	0.1028	161.0	6.26%	1973.6	5.25%
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer	BCCATTGTTC	1e-1	-4.209e+00	0.1121	683.0	26.57%	9286.7	24.69%
c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer	VCCACGTG	1e-1	-3.592e+00	0.2019	845.0	32.87%	11695.8	31.09%
Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer	YCTTTGTTCC	1e-1	-3.318e+00	0.2583	677.0	26.33%	9320.6	24.78%
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan et al.)/Homer	CTGTTTAC	1e-1	-3.258e+00	0.2672	1272.0	49.47%	17948.9	47.71%
GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATAASR	1e-1	-3.198e+00	0.2764	818.0	31.82%	11366.6	30.22%
Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer	ASWTCAAAGG	1e-1	-3.117e+00	0.2924	178.0	6.92%	2291.6	6.09%
CHR(?)/Hela-CellCycle-Expression/Homer	SRGTTTCAAA	1e-1	-3.080e+00	0.2961	375.0	14.59%	5050.5	13.43%
Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer	NBWGATAAGR	1e-1	-3.056e+00	0.2961	590.0	22.95%	8112.9	21.57%
USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	SGTCACGTGR	1e-1	-3.040e+00	0.2961	576.0	22.40%	7914.3	21.04%
Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer	NNATGASTCATH	1e-1	-3.008e+00	0.2965	346.0	13.46%	4649.6	12.36%
bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer	KCACGTGMCN	1e-1	-2.986e+00	0.2965	446.0	17.35%	6068.8	16.13%
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1e-1	-2.795e+00	0.3506	122.0	4.75%	1547.2	4.11%
STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer	RTTTCTNAGAAA	1e-1	-2.772e+00	0.3514	255.0	9.92%	3395.8	9.03%
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	1e-1	-2.757e+00	0.3514	1137.0	44.22%	16068.2	42.71%
Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1e-1	-2.713e+00	0.3575	355.0	13.81%	4812.7	12.79%
YY1(Zf)/Promoter/Homer	CAAGATGGCGGC	1e-1	-2.643e+00	0.3755	192.0	7.47%	2527.6	6.72%
ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer	AGGAARCAGCTG	1e-1	-2.642e+00	0.3755	92.0	3.58%	1149.1	3.05%
PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GCAGCCAAGCRTGACH	1e-1	-2.642e+00	0.3755	570.0	22.17%	7888.9	20.97%
GATA(Zf),IR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NAGATWNBNATCTNN	1e-1	-2.629e+00	0.3755	46.0	1.79%	535.7	1.42%
p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	ACATGCCCGGGCAT	1e-1	-2.612e+00	0.3755	30.0	1.17%	329.5	0.88%
HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer	TACGTGCV	1e-1	-2.576e+00	0.3755	417.0	16.22%	5711.8	15.18%
Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	DATGASTCATHN	1e-1	-2.552e+00	0.3755	403.0	15.67%	5515.4	14.66%
Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer	VGCTGWCAVB	1e-1	-2.513e+00	0.3755	1403.0	54.57%	20003.4	53.18%
Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer	AGGTGTGAAM	1e-1	-2.495e+00	0.3756	722.0	28.08%	10099.6	26.85%
E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer	CWGGCGGGAA	1e-1	-2.320e+00	0.4396	765.0	29.75%	10752.1	28.58%
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer	NATTTCCNGGAAAT	1e0	-2.279e+00	0.4507	217.0	8.44%	2915.8	7.75%
GFY(?)/Promoter/Homer	ACTACAATTCCC	1e0	-2.235e+00	0.4632	105.0	4.08%	1356.2	3.61%
Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer	GGTTAAWCATTAA	1e0	-2.158e+00	0.4920	64.0	2.49%	800.6	2.13%
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1e0	-2.145e+00	0.4920	112.0	4.36%	1460.9	3.88%
PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GTCACGCTCSCTGM	1e0	-2.066e+00	0.5224	163.0	6.34%	2179.5	5.79%
EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer	DGTCCCYRGGGA	1e0	-2.014e+00	0.5418	334.0	12.99%	4609.9	12.25%
MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	RRCAGCTGYTSY	1e0	-1.993e+00	0.5449	1018.0	39.60%	14492.0	38.52%
BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	DATGASTCAT	1e0	-1.943e+00	0.5646	393.0	15.29%	5464.7	14.53%
Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer	TAATCCCN	1e0	-1.931e+00	0.5646	2033.0	79.07%	29414.8	78.19%
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	1e0	-1.918e+00	0.5646	1297.0	50.45%	18580.2	49.39%
Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGMATATDC	1e0	-1.914e+00	0.5646	456.0	17.74%	6373.6	16.94%
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	MTGATGCAAT	1e0	-1.860e+00	0.5789	148.0	5.76%	1991.0	5.29%
Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer	YTAATYNRATTA	1e0	-1.780e+00	0.6186	151.0	5.87%	2041.4	5.43%
TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer	ACWTCAAAGG	1e0	-1.748e+00	0.6296	61.0	2.37%	786.7	2.09%
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	1e0	-1.689e+00	0.6590	995.0	38.70%	14228.0	37.82%
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma et al.)/Homer	ATTTTCCATT	1e0	-1.674e+00	0.6598	553.0	21.51%	7817.1	20.78%
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1e0	-1.607e+00	0.6966	267.0	10.39%	3714.5	9.87%
HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer	NCYAATAAAA	1e0	-1.567e+00	0.7157	516.0	20.07%	7305.4	19.42%
GATA3(Zf),DR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATGKDGAGATAAG	1e0	-1.536e+00	0.7286	45.0	1.75%	580.8	1.54%
GATA(Zf),IR3/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NNNNNBAGATAWYATCTVHN	1e0	-1.513e+00	0.7358	71.0	2.76%	943.1	2.51%
Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer	SVYTTCCNGGAARB	1e0	-1.438e+00	0.7837	626.0	24.35%	8927.3	23.73%
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	ATGACGTCATCY	1e0	-1.404e+00	0.8008	255.0	9.92%	3575.4	9.50%
Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer	VCAGCTGYTG	1e0	-1.387e+00	0.8042	1120.0	43.56%	16132.6	42.89%
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1e0	-1.357e+00	0.8189	1246.0	48.46%	17982.2	47.80%
E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer	DNRCAGCTGY	1e0	-1.348e+00	0.8189	1536.0	59.74%	22231.9	59.10%
CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	NTNATGCAAYMNNHTGMAAY	1e0	-1.291e+00	0.8542	62.0	2.41%	836.2	2.22%
Pax7(Paired,Homeobox),long/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCHGATTAC	1e0	-1.272e+00	0.8603	11.0	0.43%	130.5	0.35%
PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1e0	-1.247e+00	0.8719	404.0	15.71%	5755.2	15.30%
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCAT	1e0	-1.246e+00	0.8719	103.0	4.01%	1422.9	3.78%
ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer	AGTTTCASTTTC	1e0	-1.240e+00	0.8719	40.0	1.56%	531.2	1.41%
CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	GHCACGTG	1e0	-1.121e+00	0.9562	615.0	23.92%	8850.2	23.53%
Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer	CCATTGTATGCAAAT	1e0	-1.110e+00	0.9564	66.0	2.57%	910.4	2.42%
NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber et al.)/Homer	GGGGGAATCCCC	1e0	-1.045e+00	1.0000	226.0	8.79%	3222.2	8.57%
Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer	CCWTTGTYYB	1e0	-1.013e+00	1.0000	1108.0	43.10%	16076.8	42.74%
p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer	RRCATGYCYRGRCATGYYYN	1e0	-1.013e+00	1.0000	74.0	2.88%	1035.1	2.75%
p53(p53)/Saos-p53-ChIP-Seq/Homer	RRCATGYCYRGRCATGYYYN	1e0	-1.013e+00	1.0000	74.0	2.88%	1035.1	2.75%
Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer	SSCMATWAAA	1e0	-1.010e+00	1.0000	353.0	13.73%	5072.0	13.48%
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer	YTGCCAAG	1e0	-1.004e+00	1.0000	1473.0	57.29%	21419.6	56.94%
Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer	ATTAACACCT	1e0	-9.700e-01	1.0000	1276.0	49.63%	18548.1	49.31%
Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer	BBCTTATCTS	1e0	-9.421e-01	1.0000	371.0	14.43%	5350.3	14.22%
Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer	SAGATAAGRV	1e0	-9.371e-01	1.0000	343.0	13.34%	4944.3	13.14%
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1e0	-9.082e-01	1.0000	435.0	16.92%	6291.8	16.73%
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer	MAATCACTGC	1e0	-9.045e-01	1.0000	463.0	18.01%	6700.4	17.81%
E2F(E2F)/Hela-CellCycle-Expression/Homer	TTSGCGCGAAAA	1e0	-8.875e-01	1.0000	152.0	5.91%	2180.4	5.80%
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	1e0	-8.639e-01	1.0000	531.0	20.65%	7704.7	20.48%
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer	GGCCATAAATCA	1e0	-8.620e-01	1.0000	258.0	10.04%	3726.7	9.91%
IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	ACTGAAACCA	1e0	-8.551e-01	1.0000	289.0	11.24%	4179.2	11.11%
LXRE(NR),DR4/RAW-LXRb.biotin-ChIP-Seq(GSE21512)/Homer	RGGTTACTANAGGTCA	1e0	-8.447e-01	1.0000	44.0	1.71%	622.9	1.66%
BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer	NHAACBGYYV	1e0	-8.353e-01	1.0000	1191.0	46.32%	17357.8	46.14%
IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	GAAAGTGAAAGT	1e0	-8.335e-01	1.0000	93.0	3.62%	1333.6	3.55%
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1e0	-8.225e-01	1.0000	107.0	4.16%	1538.4	4.09%
T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer	ACTTTCGTTTCT	1e0	-8.032e-01	1.0000	8.0	0.31%	108.0	0.29%
CEBP(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1e0	-7.891e-01	1.0000	358.0	13.92%	5203.5	13.83%
Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer	RTCACSCCAY	1e0	-7.689e-01	1.0000	190.0	7.39%	2757.7	7.33%
NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WNTGTTTRYTTTGGCA	1e0	-7.666e-01	1.0000	28.0	1.09%	398.3	1.06%
STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer	NYTTCCWGGAAR	1e0	-7.659e-01	1.0000	647.0	25.17%	9432.8	25.08%
MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1e0	-7.365e-01	1.0000	1132.0	44.03%	16536.7	43.96%
GFY-Staf(?,Zf)/Promoter/Homer	RACTACAATTCCCAGAAKGC	1e0	-7.335e-01	1.0000	95.0	3.70%	1378.7	3.67%
Atf7(bZIP)/3T3L1-Atf7-ChIP-Seq(GSE56872)/Homer	NGRTGACGTCAY	1e0	-7.238e-01	1.0000	394.0	15.32%	5749.7	15.28%
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1e0	-7.072e-01	1.0000	78.0	3.03%	1134.5	3.02%
Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer	GKVTCADRTTWC	1e0	-6.795e-01	1.0000	157.0	6.11%	2295.6	6.10%
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	1e0	-6.536e-01	1.0000	863.0	33.57%	12638.3	33.60%
Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer	CTTCCGGGAA	1e0	-6.071e-01	1.0000	523.0	20.34%	7680.2	20.42%
CTCF-SatelliteElement(Zf?)/CD4+-CTCF-ChIP-Seq(Barski et al.)/Homer	TGCAGTTCCMVNWRTGGCCA	1e0	-6.005e-01	1.0000	18.0	0.70%	266.5	0.71%
ETS:RUNX(ETS,Runt)/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer	RCAGGATGTGGT	1e0	-5.968e-01	1.0000	122.0	4.75%	1801.0	4.79%
GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer	NRGVACABNVTGTYCY	1e0	-5.871e-01	1.0000	126.0	4.90%	1861.9	4.95%
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1e0	-5.698e-01	1.0000	744.0	28.94%	10936.0	29.07%
Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer	ASATCAAAGGVA	1e0	-5.672e-01	1.0000	288.0	11.20%	4248.6	11.29%
Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer	NNVVCAGCTGBN	1e0	-5.589e-01	1.0000	1564.0	60.83%	22941.5	60.99%
HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer	GGCCATAAATCA	1e0	-5.574e-01	1.0000	344.0	13.38%	5074.6	13.49%
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer	CCWGGAATGY	1e0	-5.547e-01	1.0000	649.0	25.24%	9550.1	25.39%
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer	NRAACCRGTTYRAACCRGYT	1e0	-5.358e-01	1.0000	196.0	7.62%	2905.1	7.72%
ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer	GGVTCTCGCGAGAAC	1e0	-5.343e-01	1.0000	152.0	5.91%	2257.8	6.00%
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson et al.)/Homer	GYCATCMATCAT	1e0	-5.231e-01	1.0000	62.0	2.41%	929.8	2.47%
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	CTGGCAGSCTGCCA	1e0	-5.124e-01	1.0000	441.0	17.15%	6517.6	17.33%
n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	VRCCACGTGG	1e0	-4.899e-01	1.0000	815.0	31.70%	12017.6	31.95%
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1e0	-4.636e-01	1.0000	399.0	15.52%	5921.2	15.74%
GATA:SCL(Zf,bHLH)/Ter119-SCL-ChIP-Seq(GSE18720)/Homer	CRGCTGBNGNSNNSAGATAA	1e0	-4.525e-01	1.0000	87.0	3.38%	1315.2	3.50%
Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1e0	-4.219e-01	1.0000	1172.0	45.59%	17289.7	45.96%
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1e0	-3.982e-01	1.0000	129.0	5.02%	1955.7	5.20%
NFAT:AP1(RHD,bZIP)/Jurkat-NFATC1-ChIP-Seq(Jolma et al.)/Homer	SARTGGAAAAWRTGAGTCAB	1e0	-3.865e-01	1.0000	95.0	3.70%	1451.1	3.86%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e0	-3.801e-01	1.0000	82.0	3.19%	1258.7	3.35%
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1e0	-3.743e-01	1.0000	726.0	28.24%	10780.6	28.66%
EBNA1(EBV virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	1e0	-3.628e-01	1.0000	16.0	0.62%	260.1	0.69%
ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer	VAGGTCACNSTGACC	1e0	-3.575e-01	1.0000	258.0	10.04%	3887.0	10.33%
Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer	NATGASTCABNN	1e0	-3.540e-01	1.0000	210.0	8.17%	3176.5	8.44%
TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer	YCWGGAATGY	1e0	-3.471e-01	1.0000	382.0	14.86%	5728.4	15.23%
GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer	RGGATTAR	1e0	-3.466e-01	1.0000	673.0	26.18%	10019.0	26.63%
AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	TGGCAGTTGG	1e0	-3.431e-01	1.0000	1257.0	48.89%	18589.3	49.42%
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1e0	-3.398e-01	1.0000	28.0	1.09%	449.4	1.19%
bZIP:IRF(bZIP,IRF)/Th17-BatF-ChIP-Seq(GSE39756)/Homer	NAGTTTCABTHTGACTNW	1e0	-3.281e-01	1.0000	228.0	8.87%	3455.9	9.19%
Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer	GCCACACCCA	1e0	-3.165e-01	1.0000	723.0	28.12%	10776.6	28.65%
MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer	RTCATGTGAC	1e0	-3.146e-01	1.0000	796.0	30.96%	11851.2	31.50%
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer	CYTGTTTACWYW	1e0	-3.098e-01	1.0000	433.0	16.84%	6504.5	17.29%
Pax7(Paired,Homeobox),longest/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	NTAATTDGCYAATTANNWWD	1e0	-3.049e-01	1.0000	9.0	0.35%	156.6	0.42%
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	RGCCATTAAC	1e0	-2.944e-01	1.0000	2057.0	80.01%	30282.1	80.50%
HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer	NTATYGATCH	1e0	-2.927e-01	1.0000	288.0	11.20%	4366.0	11.61%
NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer	GGAAATTCCC	1e0	-2.913e-01	1.0000	42.0	1.63%	675.0	1.79%
Atf2(bZIP)/3T3L1-Atf2-ChIP-Seq(GSE56872)/Homer	NRRTGACGTCAT	1e0	-2.652e-01	1.0000	278.0	10.81%	4232.6	11.25%
Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	CACAGCAGGGGG	1e0	-2.491e-01	1.0000	654.0	25.44%	9813.3	26.09%
GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer	CGTGGGTGGTCC	1e0	-2.362e-01	1.0000	167.0	6.50%	2588.3	6.88%
Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer	CGGTCACSCCAC	1e0	-2.344e-01	1.0000	137.0	5.33%	2137.7	5.68%
Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer	GTCATGCHTGRCTGS	1e0	-2.319e-01	1.0000	411.0	15.99%	6232.1	16.57%
E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	NVCACCTGBN	1e0	-2.017e-01	1.0000	1453.0	56.51%	21584.2	57.38%
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer	SCTGTCAMTCAN	1e0	-1.997e-01	1.0000	228.0	8.87%	3526.5	9.37%
Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer	AGGTGHCAGACA	1e0	-1.972e-01	1.0000	160.0	6.22%	2504.5	6.66%
NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer	CYTGGCABNSTGCCAR	1e0	-1.954e-01	1.0000	468.0	18.20%	7109.6	18.90%
NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer	KCCACGTGAC	1e0	-1.949e-01	1.0000	982.0	38.20%	14696.5	39.07%
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1e0	-1.906e-01	1.0000	27.0	1.05%	465.5	1.24%
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	1e0	-1.883e-01	1.0000	1060.0	41.23%	15849.1	42.13%
BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer	GNCACGTG	1e0	-1.846e-01	1.0000	1290.0	50.18%	19223.6	51.10%
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1e0	-1.775e-01	1.0000	349.0	13.57%	5354.2	14.23%
GATA3(Zf),DR8/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATSTNDNNDSAGATAASN	1e0	-1.668e-01	1.0000	46.0	1.79%	773.5	2.06%
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1e0	-1.527e-01	1.0000	1459.0	56.75%	21733.7	57.78%
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski et al.)/Homer	MACAGGAAGT	1e0	-1.488e-01	1.0000	248.0	9.65%	3866.1	10.28%
Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer	NNNVCTGWGYAAACASN	1e0	-1.422e-01	1.0000	620.0	24.12%	9422.8	25.05%
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	GATGASTCATCN	1e0	-1.354e-01	1.0000	144.0	5.60%	2303.0	6.12%
GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer	VAGRACAKWCTGTYC	1e0	-1.342e-01	1.0000	186.0	7.23%	2942.6	7.82%
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1e0	-1.318e-01	1.0000	1371.0	53.33%	20480.6	54.44%
NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	GATGACTCAGCA	1e0	-1.278e-01	1.0000	32.0	1.24%	566.5	1.51%
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1e0	-1.261e-01	1.0000	1944.0	75.61%	28808.9	76.58%
Pax7(Paired,Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCAATTA	1e0	-1.197e-01	1.0000	30.0	1.17%	537.1	1.43%
HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer	TTCTAGAABNTTCTA	1e0	-1.141e-01	1.0000	160.0	6.22%	2564.9	6.82%
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1e0	-1.118e-01	1.0000	78.0	3.03%	1302.9	3.46%
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	1e0	-1.077e-01	1.0000	355.0	13.81%	5519.2	14.67%
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	1e0	-1.009e-01	1.0000	408.0	15.87%	6323.4	16.81%
CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan et al.)/Homer	CCATATATGGNM	1e0	-9.709e-02	1.0000	203.0	7.90%	3237.9	8.61%
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer	WGGGGATTTCCC	1e0	-8.728e-02	1.0000	464.0	18.05%	7184.0	19.10%
ETS(ETS)/Promoter/Homer	AACCGGAAGT	1e0	-8.694e-02	1.0000	507.0	19.72%	7826.7	20.81%
Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer	ACAGCTGTTN	1e0	-8.434e-02	1.0000	1983.0	77.13%	29436.6	78.25%
Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer	GYMATAAAAH	1e0	-8.405e-02	1.0000	303.0	11.79%	4770.8	12.68%
Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer	KTGACCTTGA	1e0	-8.345e-02	1.0000	578.0	22.48%	8891.7	23.64%
Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer	AGGTGTCA	1e0	-7.880e-02	1.0000	2031.0	79.00%	30135.0	80.11%
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer	VNRVCAGCTGGY	1e0	-7.849e-02	1.0000	1041.0	40.49%	15749.4	41.87%
TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer	GAGGTCAAAGGTCA	1e0	-7.625e-02	1.0000	115.0	4.47%	1909.5	5.08%
HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer	BSTTCTRGAABVTTCYAGAA	1e0	-7.114e-02	1.0000	143.0	5.56%	2349.2	6.24%
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1e0	-6.578e-02	1.0000	1589.0	61.80%	23788.5	63.24%
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1e0	-6.248e-02	1.0000	31.0	1.21%	585.6	1.56%
Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer	NYTAATCCYB	1e0	-5.810e-02	1.0000	472.0	18.36%	7363.1	19.57%
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	VACAGGAAAT	1e0	-5.791e-02	1.0000	600.0	23.34%	9277.4	24.66%
c-Myc(bHLH)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	VVCCACGTGG	1e0	-5.769e-02	1.0000	539.0	20.96%	8367.9	22.24%
p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer	NNDRCATGYCYNRRCATGYH	1e0	-5.555e-02	1.0000	312.0	12.14%	4958.7	13.18%
TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer	CCWGGAATGY	1e0	-5.452e-02	1.0000	346.0	13.46%	5475.0	14.55%
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	1e0	-5.307e-02	1.0000	430.0	16.73%	6745.2	17.93%
CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer	GCTAATCC	1e0	-5.202e-02	1.0000	1357.0	52.78%	20453.9	54.37%
THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1e0	-4.585e-02	1.0000	460.0	17.89%	7216.2	19.18%
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1e0	-4.090e-02	1.0000	1079.0	41.97%	16423.1	43.66%
Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer	GTRGGTCASTGGGTCA	1e0	-3.832e-02	1.0000	132.0	5.13%	2231.4	5.93%
RBPJ:Ebox(?,bHLH)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	GGGRAARRGRMCAGMTG	1e0	-3.751e-02	1.0000	320.0	12.45%	5127.0	13.63%
Max(bHLH)/K562-Max-ChIP-Seq(GSE31477)/Homer	RCCACGTGGYYN	1e0	-3.634e-02	1.0000	651.0	25.32%	10108.9	26.87%
GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer	AAACYKGTTWDACMRGTTTB	1e0	-3.410e-02	1.0000	239.0	9.30%	3899.7	10.37%
FOXA1:AR(Forkhead,NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	AGTAAACAAAAAAGAACAND	1e0	-3.108e-02	1.0000	28.0	1.09%	565.1	1.50%
EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer	GTCCCCWGGGGA	1e0	-2.911e-02	1.0000	1322.0	51.42%	20039.6	53.27%
PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer	ACCRTGACTAATTNN	1e0	-2.904e-02	1.0000	89.0	3.46%	1571.1	4.18%
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	1e0	-2.897e-02	1.0000	948.0	36.87%	14550.0	38.68%
Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer	ACTYKNATTCGTGNTACTTC	1e0	-2.820e-02	1.0000	28.0	1.09%	569.2	1.51%
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1e0	-2.820e-02	1.0000	755.0	29.37%	11694.1	31.09%
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer	ASWTCCTGBT	1e0	-2.139e-02	1.0000	971.0	37.77%	14935.2	39.70%
PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer	RGGTCTCTAACY	1e0	-1.946e-02	1.0000	263.0	10.23%	4324.7	11.50%
SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	AVCAGCTG	1e0	-1.919e-02	1.0000	2363.0	91.91%	34967.2	92.96%
Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer	CVGTSCTCCC	1e0	-1.843e-02	1.0000	1937.0	75.34%	28990.8	77.07%
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	1e0	-1.558e-02	1.0000	669.0	26.02%	10495.8	27.90%
Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer	RRSCACTYAA	1e0	-1.513e-02	1.0000	1575.0	61.26%	23815.6	63.31%
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1e0	-1.242e-02	1.0000	907.0	35.28%	14067.2	37.40%
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	AVCCGGAAGT	1e0	-1.169e-02	1.0000	823.0	32.01%	12829.3	34.10%
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1e0	-1.164e-02	1.0000	1549.0	60.25%	23475.3	62.41%
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1e0	-9.676e-03	1.0000	1398.0	54.38%	21309.1	56.65%
KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer	DGGGYGKGGC	1e0	-7.921e-03	1.0000	1893.0	73.63%	28464.7	75.67%
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	ATTTCCTGTN	1e0	-7.611e-03	1.0000	488.0	18.98%	7858.2	20.89%
MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer	GCTGASTCAGCA	1e0	-7.300e-03	1.0000	158.0	6.15%	2767.6	7.36%
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	ACAGGAAGTG	1e0	-6.784e-03	1.0000	1081.0	42.05%	16718.5	44.44%
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1e0	-6.478e-03	1.0000	548.0	21.31%	8784.4	23.35%
RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer	AGGTCAAGGTCA	1e0	-6.077e-03	1.0000	46.0	1.79%	944.6	2.51%
SpiB(ETS)/OCILY3-SPIB-ChIP-Seq(GSE56857)/Homer	AAAGRGGAAGTG	1e0	-5.144e-03	1.0000	183.0	7.12%	3189.5	8.48%
Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer	NNNCTTTCCAGGAAA	1e0	-4.623e-03	1.0000	924.0	35.94%	14448.8	38.41%
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1e0	-4.456e-03	1.0000	1492.0	58.03%	22775.0	60.54%
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	TGACCTTTNCNT	1e0	-3.446e-03	1.0000	85.0	3.31%	1630.6	4.33%
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1e0	-3.036e-03	1.0000	2201.0	85.61%	32883.8	87.42%
VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer	ARAGGTCANWGAGTTCANNN	1e0	-3.036e-03	1.0000	180.0	7.00%	3179.8	8.45%
FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong et al.)/Homer	AGGTCANTGACCTB	1e0	-2.875e-03	1.0000	422.0	16.41%	6952.8	18.48%
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NWGGGTGTGGCY	1e0	-2.381e-03	1.0000	238.0	9.26%	4115.6	10.94%
AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer	ATGCCCTGAGGC	1e0	-2.096e-03	1.0000	1345.0	52.31%	20730.8	55.11%
ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer	AGGCCTRG	1e0	-1.952e-03	1.0000	1513.0	58.85%	23175.9	61.61%
Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer	BTCAAGGTCA	1e0	-1.796e-03	1.0000	641.0	24.93%	10327.6	27.45%
Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer	BTCAAGGTCA	1e0	-1.414e-03	1.0000	507.0	19.72%	8319.6	22.12%
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1e0	-1.041e-03	1.0000	206.0	8.01%	3667.3	9.75%
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	1e0	-9.580e-04	1.0000	1267.0	49.28%	19681.9	52.32%
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer	WAAGTAAACA	1e0	-8.500e-04	1.0000	431.0	16.76%	7201.9	19.15%
PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer	TGACCTTTGCCCCA	1e0	-7.140e-04	1.0000	844.0	32.83%	13469.4	35.81%
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1e0	-3.290e-04	1.0000	1954.0	76.00%	29630.6	78.77%
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	RACCGGAAGT	1e0	-3.000e-04	1.0000	988.0	38.43%	15699.7	41.74%
AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer	SCCTSAGGSCAW	1e0	-1.600e-04	1.0000	1593.0	61.96%	24579.5	65.34%
ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	AACCGGAAGT	1e0	-1.020e-04	1.0000	1333.0	51.85%	20868.8	55.48%
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski et al.)/Homer	GCTGTGGTTW	1e0	-4.100e-05	1.0000	472.0	18.36%	8077.8	21.47%
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	AAACCACARM	1e0	-1.100e-05	1.0000	672.0	26.14%	11248.1	29.90%
RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer	TAGGGCAAAGGTCA	1e0	-8.000e-06	1.0000	1041.0	40.49%	16810.7	44.69%
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1e0	-6.000e-06	1.0000	527.0	20.50%	9068.8	24.11%
RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	SAAACCACAG	1e0	-4.000e-06	1.0000	503.0	19.56%	8733.6	23.22%
EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	AVCAGGAAGT	1e0	-2.000e-06	1.0000	1056.0	41.07%	17142.9	45.57%
Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer	CAAAGGTCAG	1e0	-1.000e-06	1.0000	1643.0	63.91%	25689.1	68.29%
HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer	CARRGKBCAAAGTYCA	1e0	-1.000e-06	1.0000	326.0	12.68%	6018.8	16.00%
ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	ACAGGAAGTG	1e0	-0.000e+00	1.0000	1309.0	50.91%	20963.9	55.73%
Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer	RSCACTYRAG	1e0	-0.000e+00	1.0000	1846.0	71.80%	28637.1	76.13%
ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer	AGGCCTAG	1e0	-0.000e+00	1.0000	1934.0	75.22%	29977.8	79.69%
NFY(CCAAT)/Promoter/Homer	RGCCAATSRG	1e0	-0.000e+00	1.0000	655.0	25.48%	11988.5	31.87%