| Database and Motifs | High-scoring Motif Occurences | Debugging Information |
FIMO version 4.10.2, (Release date: Thu Sep 03 15:00:54 2015 -0700)
For further information on how to interpret these results or to get a copy of the FIMO software please access http://meme.nbcr.net
If you use FIMO in your research, please cite the following paper:
Charles E. Grant, Timothy L. Bailey, and William Stafford Noble,
"FIMO: Scanning for occurrences of a given motif",
Bioinformatics, 27(7):1017-1018, 2011.
[full text]
DATABASE chr20_22523060_22523768.fasta
Database contains 1 sequences, 367452 residues
MOTIFS /home/zhangbo/Tools/motif_databases/JASPAR/Modi_JASPAR_CORE_2016_vertebrates.meme_modi (nucleotide)
| MOTIF | WIDTH | BEST POSSIBLE MATCH |
|---|---|---|
| MA0002.2_RUNX1 | 11 | GTCTGTGGTTT |
| MA0003.3_TFAP2A | 11 | CGCCTCAGGCA |
| MA0004.1_Arnt | 6 | CACGTG |
| MA0006.1_Ahr::Arnt | 6 | TGCGTG |
| MA0007.3_Ar | 17 | GGGAACACGGTGTACCC |
| MA0009.2_T | 16 | TCACACCTAGGTGTGA |
| MA0014.2_PAX5 | 19 | GAGGGCAGCCAAGCGTGAC |
| MA0017.2_NR2F1 | 13 | CAAAGGTCAAGGG |
| MA0018.2_CREB1 | 8 | TGACGTCA |
| MA0019.1_Ddit3::Cebpa | 12 | AGATGCAATCCC |
| MA0024.3_E2F1 | 12 | TTTGGCGCCAAA |
| MA0025.1_NFIL3 | 11 | TTATGTAACAT |
| MA0027.2_EN1 | 8 | CTAATTAG |
| MA0028.2_ELK1 | 10 | ACCGGAAGTG |
| MA0029.1_Mecom | 14 | AAGATAAGATAATA |
| MA0030.1_FOXF2 | 14 | CAAACGTAAACAAT |
| MA0031.1_FOXD1 | 8 | GTAAACAT |
| MA0032.2_FOXC1 | 11 | TATGTAAATAT |
| MA0033.2_FOXL1 | 7 | GTAAACA |
| MA0035.3_Gata1 | 11 | TTCTTATCTGT |
| MA0036.2_GATA2 | 14 | AGATTCTTATCTGT |
| MA0037.2_GATA3 | 8 | AGATAAGA |
| MA0038.1_Gfi1 | 10 | CAAATCACTG |
| MA0039.2_Klf4 | 10 | TGGGTGGGGC |
| MA0040.1_Foxq1 | 11 | TATTGTTTATT |
| MA0041.1_Foxd3 | 12 | GAATGTTTGTTT |
| MA0042.2_FOXI1 | 7 | GTAAACA |
| MA0043.2_HLF | 12 | CATTACGTAACC |
| MA0046.2_HNF1A | 15 | AGTTAATGATTAACT |
| MA0047.2_Foxa2 | 12 | TGTTTACTTAGG |
| MA0048.2_NHLH1 | 10 | CGCAGCTGCG |
| MA0050.2_IRF1 | 21 | TTTTACTTTCACTTTCACTTT |
| MA0051.1_IRF2 | 18 | GGAAAGTGAAAGCAAAAC |
| MA0052.3_MEF2A | 12 | TCTAAAAATAGA |
| MA0056.1_MZF1 | 6 | TGGGGA |
| MA0057.1_MZF1(var.2) | 10 | GTAGGGGGAA |
| MA0058.3_MAX | 10 | ACCACGTGCT |
| MA0059.1_MAX::MYC | 11 | GAGCACGTGGT |
| MA0060.2_NFYA | 18 | AGAGTGCTGATTGGTCCA |
| MA0062.2_Gabpa | 11 | CCGGAAGTGGC |
| MA0063.1_Nkx2-5 | 7 | TTAATTG |
| MA0065.2_Pparg::Rxra | 15 | GTAGGGCAAAGGTCA |
| MA0066.1_PPARG | 20 | GTAGGTCACGGTGACCTACT |
| MA0067.1_Pax2 | 8 | AGTCACGG |
| MA0068.2_PAX4 | 8 | CTAATTAG |
| MA0069.1_Pax6 | 14 | TTCACGCATGAGTT |
| MA0070.1_PBX1 | 12 | CCATCAATCAAA |
| MA0071.1_RORA | 10 | ATCAAGGTCA |
| MA0072.1_RORA(var.2) | 14 | TATAAGTAGGTCAA |
| MA0073.1_RREB1 | 20 | CCCCAAACCACCCCCCCCCA |
| MA0074.1_RXRA::VDR | 15 | GGGTCAACGAGTTCA |
| MA0075.2_Prrx2 | 8 | CCAATTAA |
| MA0076.2_ELK4 | 11 | CCACTTCCGGC |
| MA0077.1_SOX9 | 9 | CCATTGTTC |
| MA0078.1_Sox17 | 9 | TTCATTGTC |
| MA0079.3_SP1 | 11 | GCCCCGCCCCC |
| MA0080.4_SPI1 | 14 | AAAAAGCGGAAGTA |
| MA0081.1_SPIB | 7 | AGAGGAA |
| MA0083.3_SRF | 16 | TGACCATATATGGTCA |
| MA0084.1_SRY | 9 | GTAAACAAT |
| MA0087.1_Sox5 | 7 | ATTGTTA |
| MA0088.2_ZNF143 | 16 | TACCCACAATGCATTG |
| MA0089.1_MAFG::NFE2L1 | 6 | CATGAC |
| MA0090.2_TEAD1 | 10 | CACATTCCAT |
| MA0091.1_TAL1::TCF3 | 12 | CGACCATCTGTT |
| MA0092.1_Hand1::Tcf3 | 10 | GGTCTGGCAT |
| MA0093.2_USF1 | 11 | GCCACGTGACC |
| MA0095.2_YY1 | 12 | CAAGATGGCGGC |
| MA0098.3_ETS1 | 10 | ACCGGAAGTG |
| MA0099.2_FOS::JUN | 7 | TGACTCA |
| MA0100.2_Myb | 10 | CCAACTGCCA |
| MA0101.1_REL | 10 | GGGGATTTCC |
| MA0102.3_CEBPA | 11 | ATTGCACAATA |
| MA0103.2_ZEB1 | 9 | CCTCACCTG |
| MA0104.3_Mycn | 8 | GCCACGTG |
| MA0105.4_NFKB1 | 13 | AGGGGAATCCCCT |
| MA0106.3_TP53 | 18 | AACATGCCCGGGCATGTC |
| MA0107.1_RELA | 10 | GGGAATTTCC |
| MA0108.2_TBP | 15 | GTATAAAAGGCGGGG |
| MA0109.1_HLTF | 10 | AACCTTATAT |
| MA0111.1_Spz1 | 11 | AGGGTAACAGC |
| MA0112.3_ESR1 | 17 | AAGGTCACGGTGACCTG |
| MA0113.3_NR3C1 | 17 | GGGTACATAATGTTCCC |
| MA0114.3_Hnf4a | 16 | GGGGTCAAAGTCCAAT |
| MA0115.1_NR1H2::RXRA | 17 | AAAGGTCAAAGGTCAAC |
| MA0116.1_Znf423 | 15 | GGCACCCAGGGGTGC |
| MA0117.2_Mafb | 12 | AAAATGCTGACT |
| MA0119.1_NFIC::TLX1 | 14 | TGGCACCATGCCAA |
| MA0122.2_NKX3-2 | 9 | ACCACTTAA |
| MA0124.2_Nkx3-1 | 9 | ACCACTTAA |
| MA0125.1_Nobox | 8 | TAATTGGT |
| MA0130.1_ZNF354C | 6 | ATCCAC |
| MA0131.2_HINFP | 12 | CAACGTCCGCGG |
| MA0132.2_PDX1 | 8 | GTAATTAG |
| MA0135.1_Lhx3 | 13 | AAATTAATTAATC |
| MA0136.2_ELF5 | 11 | ACCCGGAAGTA |
| MA0137.3_STAT1 | 11 | TTTCCAGGAAA |
| MA0138.2_REST | 21 | TTCAGCACCATGGACAGCGCC |
| MA0139.1_CTCF | 19 | TGGCCACCAGGGGGCGCTA |
| MA0140.2_GATA1::TAL1 | 18 | CTTATCTGTGAGGAGCAG |
| MA0141.3_ESRRB | 11 | TCAAGGTCATA |
| MA0142.1_Pou5f1::Sox2 | 15 | CTTTGTTATGCAAAT |
| MA0143.3_Sox2 | 8 | CCTTTGTT |
| MA0144.2_STAT3 | 11 | CTTCTGGGAAA |
| MA0145.3_TFCP2 | 10 | AAACCGGTTT |
| MA0146.2_Zfx | 14 | GGGGCCGAGGCCTG |
| MA0147.2_Myc | 10 | CCATGTGCTT |
| MA0148.3_FOXA1 | 15 | TCCATGTTTACTTTG |
| MA0149.1_EWSR1-FLI1 | 18 | GGAAGGAAGGAAGGAAGG |
| MA0150.2_Nfe2l2 | 15 | CAGCATGACTCAGCA |
| MA0151.1_Arid3a | 6 | ATTAAA |
| MA0152.1_NFATC2 | 7 | TTTTCCA |
| MA0153.2_HNF1B | 13 | GTTAATGATTAAC |
| MA0154.3_EBF1 | 14 | ATTCCCAAGGGAAT |
| MA0155.1_INSM1 | 12 | TGTCAGGGGGCG |
| MA0156.2_FEV | 10 | ACCGGAAGTG |
| MA0157.2_FOXO3 | 8 | GTAAACAA |
| MA0158.1_HOXA5 | 8 | CACTAATT |
| MA0159.1_RARA::RXRA | 17 | AGGTCATGGAGAGGTCA |
| MA0160.1_NR4A2 | 8 | AAGGTCAC |
| MA0161.1_NFIC | 6 | TTGGCA |
| MA0162.2_EGR1 | 14 | CCCCCGCCCCCGCC |
| MA0163.1_PLAG1 | 14 | GGGGCCCAAGGGGG |
| MA0164.1_Nr2e3 | 7 | CAAGCTT |
| MA0258.2_ESR2 | 15 | AGGTCACCCTGACCT |
| MA0259.1_ARNT::HIF1A | 8 | GGACGTGC |
| MA0442.1_SOX10 | 6 | CTTTGT |
| MA0461.2_Atoh1 | 10 | AACATATGTT |
| MA0462.1_BATF::JUN | 11 | GAAATGACTCA |
| MA0463.1_Bcl6 | 14 | TTTCCTAGAAAGCA |
| MA0464.2_BHLHE40 | 10 | ATCACGTGAC |
| MA0465.1_CDX2 | 11 | AAGCCATAAAA |
| MA0466.2_CEBPB | 10 | ATTGCGCAAT |
| MA0467.1_Crx | 11 | AAGAGGATTAG |
| MA0468.1_DUX4 | 11 | TAATTTAATCA |
| MA0469.2_E2F3 | 18 | AAAAATGGCGCCATTTTT |
| MA0470.1_E2F4 | 11 | GGGCGGGAAGG |
| MA0471.1_E2F6 | 11 | GGGCGGGAAGG |
| MA0472.2_EGR2 | 11 | ACGCCCACGCA |
| MA0473.2_ELF1 | 12 | AACCCGGAAGTG |
| MA0474.2_ERG | 10 | ACCGGAAGTG |
| MA0475.2_FLI1 | 10 | ACCGGAAGTG |
| MA0476.1_FOS | 11 | TGTGACTCATT |
| MA0477.1_FOSL1 | 11 | GGTGACTCATG |
| MA0478.1_FOSL2 | 11 | GGATGACTCAT |
| MA0479.1_FOXH1 | 11 | TCCAATCCACA |
| MA0480.1_Foxo1 | 11 | TCCTGTTTACA |
| MA0481.1_FOXP1 | 15 | CAAAAGTAAACAAAG |
| MA0482.1_Gata4 | 11 | TCTTATCTCCC |
| MA0483.1_Gfi1b | 11 | AAATCACAGCA |
| MA0484.1_HNF4G | 15 | AGAGTCCAAAGTCCA |
| MA0485.1_Hoxc9 | 13 | GGCCATAAATCAC |
| MA0486.2_HSF1 | 13 | TTCTAGAACGTTC |
| MA0488.1_JUN | 13 | AAGATGATGTCAT |
| MA0489.1_JUN(var.2) | 14 | AGGAGATGACTCAT |
| MA0490.1_JUNB | 11 | GGATGACTCAT |
| MA0491.1_JUND | 11 | GGTGACTCATC |
| MA0492.1_JUND(var.2) | 15 | AAAGATGATGTCATC |
| MA0493.1_Klf1 | 11 | GGCCACACCCA |
| MA0494.1_Nr1h3::Rxra | 19 | TGACCTAAAGTAACCTCTG |
| MA0495.1_MAFF | 18 | GCTGAGTCAGCAATTTTT |
| MA0496.1_MAFK | 15 | CTGAGTCAGCAATTT |
| MA0497.1_MEF2C | 15 | ATGCTAAAAATAGAA |
| MA0498.2_MEIS1 | 7 | TTGACAG |
| MA0499.1_Myod1 | 13 | TGCAGCTGTCCCT |
| MA0500.1_Myog | 11 | GACAGCTGCAG |
| MA0501.1_MAF::NFE2 | 15 | ATGACTCAGCAATTT |
| MA0502.1_NFYB | 15 | AAATGGACCAATCAG |
| MA0503.1_Nkx2-5(var.2) | 11 | AGCCACTCAAG |
| MA0504.1_NR2C2 | 15 | AGGGGTCAGAGGTCA |
| MA0505.1_Nr5a2 | 15 | AAGTTCAAGGTCAGC |
| MA0506.1_NRF1 | 11 | GCGCCTGCGCA |
| MA0507.1_POU2F2 | 13 | TTCATTTGCATAT |
| MA0508.1_PRDM1 | 15 | AGAAAGTGAAAGTGA |
| MA0509.1_Rfx1 | 14 | GTTGCCATGGCAAC |
| MA0510.2_RFX5 | 16 | CGTTGCCATGGCAACG |
| MA0511.2_RUNX2 | 9 | AAACCGCAA |
| MA0512.2_Rxra | 14 | GGGGTCAAAGGTCA |
| MA0513.1_SMAD2::SMAD3::SMAD4 | 13 | CTGTCTGTCACCT |
| MA0514.1_Sox3 | 10 | CCTTTGTTTT |
| MA0515.1_Sox6 | 10 | CCATTGTTTT |
| MA0516.1_SP2 | 15 | GCCCCGCCCCCTCCC |
| MA0517.1_STAT1::STAT2 | 15 | TCAGTTTCATTTTCC |
| MA0518.1_Stat4 | 14 | TTTCCAGGAAATGG |
| MA0519.1_Stat5a::Stat5b | 11 | ATTTCCAAGAA |
| MA0520.1_Stat6 | 15 | CATTTCCTGAGAAAT |
| MA0521.1_Tcf12 | 11 | AACAGCTGCAG |
| MA0522.2_TCF3 | 10 | AACACCTGCT |
| MA0523.1_TCF7L2 | 14 | AAAGATCAAAGGAA |
| MA0524.2_TFAP2C | 12 | TGCCCCAGGGCA |
| MA0525.2_TP63 | 18 | AACATGTTGGGACATGTC |
| MA0526.1_USF2 | 11 | GTCATGTGACC |
| MA0527.1_ZBTB33 | 15 | CTCTCGCGAGATCTG |
| MA0528.1_ZNF263 | 21 | GGAGGAGGAGGGGGAGGAGGA |
| MA0591.1_Bach1::Mafk | 15 | AGGATGACTCAGCAC |
| MA0592.2_Esrra | 11 | TTCAAGGTCAT |
| MA0593.1_FOXP2 | 11 | AAGTAAACAAA |
| MA0594.1_Hoxa9 | 11 | GCCATAAATCA |
| MA0595.1_SREBF1 | 10 | ATCACCCCAC |
| MA0596.1_SREBF2 | 10 | ATGGGGTGAT |
| MA0597.1_THAP1 | 9 | CTGCCCGCA |
| MA0598.2_EHF | 12 | AACCCGGAAGTA |
| MA0599.1_KLF5 | 10 | GCCCCGCCCC |
| MA0600.2_RFX2 | 16 | CGTTGCCATGGCAACG |
| MA0601.1_Arid3b | 11 | ATATTAATTAA |
| MA0602.1_Arid5a | 14 | CTAATATTGCTAAA |
| MA0603.1_Arntl | 10 | GGTCACGTGC |
| MA0604.1_Atf1 | 8 | ATGACGTA |
| MA0605.1_Atf3 | 8 | GATGACGT |
| MA0606.1_NFAT5 | 10 | ATTTTCCATT |
| MA0607.1_Bhlha15 | 8 | CCATATGT |
| MA0608.1_Creb3l2 | 9 | GCCACGTGT |
| MA0609.1_Crem | 10 | TATGACGTAA |
| MA0610.1_DMRT3 | 11 | AATGTATCAAT |
| MA0611.1_Dux | 8 | CCAATCAA |
| MA0612.1_EMX1 | 10 | CCTAATTACC |
| MA0613.1_FOXG1 | 8 | GTAAACAA |
| MA0614.1_Foxj2 | 8 | GTAAACAA |
| MA0615.1_Gmeb1 | 17 | GAGTTTACGTAAGATGG |
| MA0616.1_Hes2 | 13 | TAACGACACGTGC |
| MA0617.1_Id2 | 8 | GCACGTGA |
| MA0618.1_LBX1 | 8 | TTAATTAG |
| MA0619.1_LIN54 | 9 | ATTTGAATT |
| MA0620.1_Mitf | 10 | GGTCACGTGG |
| MA0621.1_mix-a | 11 | AATTAATTAGT |
| MA0622.1_Mlxip | 8 | GCACGTGT |
| MA0623.1_Neurog1 | 10 | ACCATATGGT |
| MA0624.1_NFATC1 | 10 | ATTTTCCATT |
| MA0625.1_NFATC3 | 10 | ATTTTCCATT |
| MA0626.1_Npas2 | 10 | GGCACGTGTC |
| MA0627.1_Pou2f3 | 16 | TTGTATGCAAATTAGA |
| MA0628.1_POU6F1 | 10 | ATTAATTAAT |
| MA0629.1_Rhox11 | 17 | AAGACGCTGTAAAGCGA |
| MA0630.1_SHOX | 8 | TTAATTGG |
| MA0631.1_Six3 | 17 | GATAGGGTATCACTAAT |
| MA0632.1_Tcfl5 | 10 | GGCACGTGCC |
| MA0633.1_Twist2 | 10 | ACCATATGTT |
| MA0634.1_ALX3 | 10 | TCTAATTAAA |
| MA0635.1_BARHL2 | 10 | GCTAAACGGT |
| MA0636.1_BHLHE41 | 10 | GTCACGTGAC |
| MA0637.1_CENPB | 15 | CCCGCATACAACGAA |
| MA0638.1_CREB3 | 14 | GTGCCACGTCATCA |
| MA0639.1_DBP | 12 | TATTACGTAACA |
| MA0640.1_ELF3 | 13 | AACCCGGAAGTAA |
| MA0641.1_ELF4 | 12 | AACCCGGAAGTG |
| MA0642.1_EN2 | 10 | CCCAATTAGC |
| MA0643.1_Esrrg | 10 | TCAAGGTCAT |
| MA0644.1_ESX1 | 10 | ACCAATTAAC |
| MA0645.1_ETV6 | 10 | AGCGGAAGTG |
| MA0646.1_GCM1 | 11 | CATGCGGGTAC |
| MA0647.1_GRHL1 | 12 | AAAACCGGTTTT |
| MA0648.1_GSC | 10 | GCTAATCCCC |
| MA0649.1_HEY2 | 10 | GACACGTGCC |
| MA0650.1_HOXA13 | 10 | CCAATAAAAA |
| MA0651.1_HOXC11 | 11 | GGTCGTAAAAT |
| MA0652.1_IRF8 | 14 | TCGAAACCGAAACT |
| MA0653.1_IRF9 | 15 | AACGAAACCGAAACT |
| MA0654.1_ISX | 8 | CTAATTAA |
| MA0655.1_JDP2 | 9 | ATGACTCAT |
| MA0656.1_JDP2(var.2) | 12 | GATGACGTCATC |
| MA0657.1_KLF13 | 18 | ATGCCACGCCCCTTTTTG |
| MA0658.1_LHX6 | 10 | ACTAATTAGC |
| MA0659.1_MAFG | 21 | AAATTGCTGAGTCAGCATATT |
| MA0660.1_MEF2B | 12 | GCTATAAATAGC |
| MA0661.1_MEOX1 | 10 | GCTAATTAAC |
| MA0662.1_MIXL1 | 10 | TCTAATTAAC |
| MA0663.1_MLX | 10 | ATCACGTGAT |
| MA0664.1_MLXIPL | 10 | ATCACGTGAT |
| MA0665.1_MSC | 10 | AACAGCTGTT |
| MA0666.1_MSX1 | 8 | CCAATTAG |
| MA0667.1_MYF6 | 10 | AACAGCTGTT |
| MA0668.1_NEUROD2 | 10 | GCCATATGGT |
| MA0669.1_NEUROG2 | 10 | AACATATGTC |
| MA0670.1_NFIA | 10 | GGTGCCAAGT |
| MA0671.1_NFIX | 9 | CGTGCCAAG |
| MA0672.1_NKX2-3 | 10 | ACCACTTGAA |
| MA0673.1_NKX2-8 | 9 | CCACTTGAA |
| MA0674.1_NKX6-1 | 8 | GTAATTAA |
| MA0675.1_NKX6-2 | 8 | CTAATTAA |
| MA0676.1_Nr2e1 | 9 | AAAAGTCAA |
| MA0677.1_Nr2f6 | 14 | GAGGTCAAAGGTCA |
| MA0678.1_OLIG2 | 10 | ACCATATGGT |
| MA0679.1_ONECUT1 | 14 | AAAAAATCGATAAT |
| MA0680.1_PAX7 | 10 | TAATCGATTA |
| MA0681.1_Phox2b | 11 | TAATTTAATTA |
| MA0682.1_Pitx1 | 8 | TTAATCCC |
| MA0683.1_POU4F2 | 16 | ATGCATAATTAATGAG |
| MA0684.1_RUNX3 | 10 | AAACCGCAAA |
| MA0685.1_SP4 | 17 | TAAGCCACGCCCCCTTT |
| MA0686.1_SPDEF | 11 | ACCCGGATGTA |
| MA0687.1_SPIC | 14 | AAAAAGAGGAAGTA |
| MA0688.1_TBX2 | 11 | AAGGTGTGAAA |
| MA0689.1_TBX20 | 11 | TAGGTGTGAAG |
| MA0690.1_TBX21 | 10 | AAGGTGTGAA |
| MA0691.1_TFAP4 | 10 | AACAGCTGAT |
| MA0692.1_TFEB | 10 | ATCACGTGAC |
| MA0693.1_Vdr | 16 | GAGTTCATTGAGTTCA |
| MA0694.1_ZBTB7B | 12 | GCGACCACCGAA |
| MA0695.1_ZBTB7C | 12 | GCGACCACCGAA |
| MA0696.1_ZIC1 | 14 | GACCCCCCGCTGTG |
| MA0697.1_ZIC3 | 15 | GACCCCCCGCTGCGC |
| MA0698.1_ZBTB18 | 13 | CATCCAGATGTTC |
| MA0699.1_LBX2 | 10 | GCCAATTAGC |
| MA0700.1_LHX2 | 10 | ACTAATTAAC |
| MA0701.1_LHX9 | 8 | CCAATTAA |
| MA0702.1_LMX1A | 8 | TTAATTAA |
| MA0703.1_LMX1B | 8 | TTAATTAA |
| MA0704.1_Lhx4 | 8 | TTAATTAA |
| MA0705.1_Lhx8 | 8 | CTAATTAG |
| MA0706.1_MEOX2 | 10 | AGTAATTAAC |
| MA0707.1_MNX1 | 10 | GGTAATTAAA |
| MA0708.1_MSX2 | 8 | CCAATTAA |
| MA0709.1_Msx3 | 8 | CCAATTAA |
| MA0710.1_NOTO | 10 | GCTAATTAGC |
| MA0711.1_OTX1 | 8 | TTAATCCG |
| MA0712.1_OTX2 | 8 | TTAATCCT |
| MA0713.1_PHOX2A | 11 | TAATTTAATTA |
| MA0714.1_PITX3 | 9 | CTTAATCCC |
| MA0715.1_PROP1 | 11 | TAATTTAATTA |
| MA0716.1_PRRX1 | 8 | CTAATTAA |
| MA0717.1_RAX2 | 8 | CCAATTAA |
| MA0718.1_RAX | 10 | GCCAATTAAC |
| MA0719.1_RHOXF1 | 8 | ATAATCCC |
| MA0720.1_Shox2 | 8 | CTAATTAA |
| MA0721.1_UNCX | 8 | CTAATTAA |
| MA0722.1_VAX1 | 8 | CTAATTAC |
| MA0723.1_VAX2 | 8 | CTAATTAC |
| MA0724.1_VENTX | 9 | ACCGATTAG |
| MA0725.1_VSX1 | 8 | CTAATTAT |
| MA0726.1_VSX2 | 8 | CTAATTAG |
| MA0727.1_NR3C2 | 17 | GGGAACACAATGTTCCC |
| MA0728.1_Nr2f6(var.2) | 15 | GAGGTCAAAAGGTCA |
| MA0729.1_RARA | 18 | GAGGTCAAAAGGTCAATG |
| MA0730.1_RARA(var.2) | 17 | AGGTCATGCAAAGGTCA |
| MA0731.1_BCL6B | 17 | TGCTTTCTAGGAATTCA |
| MA0732.1_EGR3 | 15 | CTACGCCCACGCACT |
| MA0733.1_EGR4 | 16 | TTACGCCCACGCATTT |
| MA0734.1_GLI2 | 12 | GCGACCACACTG |
| MA0735.1_GLIS1 | 16 | AGACCCCCCACGAAGC |
| MA0736.1_GLIS2 | 14 | GACCCCCCGCGAAG |
| MA0737.1_GLIS3 | 14 | GACCCCCCACGAAG |
| MA0738.1_HIC2 | 9 | ATGCCCACC |
| MA0739.1_Hic1 | 9 | ATGCCAACC |
| MA0740.1_KLF14 | 14 | GGCCACGCCCCCTT |
| MA0741.1_KLF16 | 11 | GCCACGCCCCC |
| MA0742.1_Klf12 | 15 | GACCACGCCCTTATT |
| MA0743.1_SCRT1 | 15 | GAGCAACAGGTGGTT |
| MA0744.1_SCRT2 | 13 | ATGCAACAGGTGG |
| MA0745.1_SNAI2 | 9 | AACAGGTGT |
| MA0746.1_SP3 | 11 | GCCACGCCCCC |
| MA0747.1_SP8 | 12 | GCCACGCCCACT |
| MA0748.1_YY2 | 11 | GTCCGCCATTA |
| MA0749.1_ZBED1 | 13 | CTATCGCGACATA |
| MA0750.1_ZBTB7A | 12 | GGCGACCACCGA |
| MA0751.1_ZIC4 | 15 | GACCCCCCGCTGTGC |
| MA0752.1_ZNF410 | 17 | TCCATCCCATAATACTC |
| MA0753.1_ZNF740 | 10 | CCCCCCCCAC |
| MA0754.1_CUX1 | 10 | TAATCGATAA |
| MA0755.1_CUX2 | 10 | TAATCGATAA |
| MA0756.1_ONECUT2 | 14 | AAAAAATCGATAAT |
| MA0757.1_ONECUT3 | 14 | AAAAAATCAATAAT |
| MA0758.1_E2F7 | 14 | TTTTCCCGCCAAAA |
| MA0759.1_ELK3 | 10 | ACCGGAAGTA |
| MA0760.1_ERF | 10 | ACCGGAAGTG |
| MA0761.1_ETV1 | 10 | ACCGGAAGTA |
| MA0762.1_ETV2 | 11 | AACCGGAAATA |
| MA0763.1_ETV3 | 10 | ACCGGAAGTG |
| MA0764.1_ETV4 | 10 | ACCGGAAGTA |
| MA0765.1_ETV5 | 10 | ACCGGAAGTG |
| MA0766.1_GATA5 | 8 | AGATAAGA |
| MA0767.1_GCM2 | 10 | TATGCGGGTA |
| MA0768.1_LEF1 | 15 | AAAGATCAAAGGGTT |
| MA0769.1_Tcf7 | 12 | AAAGATCAAAGG |
| MA0770.1_HSF2 | 13 | TTCTAGAACGTTC |
| MA0771.1_HSF4 | 13 | TTCTAGAACGTTC |
| MA0772.1_IRF7 | 14 | ACGAAAGCGAAAGT |
| MA0773.1_MEF2D | 12 | ACTATAAATAGA |
| MA0774.1_MEIS2 | 8 | TTGACAGC |
| MA0775.1_MEIS3 | 8 | TTGACAGG |
| MA0776.1_MYBL1 | 12 | ACCGTTAACGGT |
| MA0777.1_MYBL2 | 15 | AACCGTTAAACGGTC |
| MA0778.1_NFKB2 | 13 | AGGGGATTCCCCT |
| MA0779.1_PAX1 | 17 | CGTCACGCATGACTGCA |
| MA0780.1_PAX3 | 10 | TAATCGATTA |
| MA0781.1_PAX9 | 17 | CGTCACGCATGACTGCA |
| MA0782.1_PKNOX1 | 12 | TGACAGGTGTCA |
| MA0783.1_PKNOX2 | 12 | TGACAGGTGTCA |
| MA0784.1_POU1F1 | 14 | AATATGCAAATTAG |
| MA0785.1_POU2F1 | 12 | AATATGCAAATT |
| MA0786.1_POU3F1 | 12 | TTATGCAAATTA |
| MA0787.1_POU3F2 | 12 | TTATGCAAATTA |
| MA0788.1_POU3F3 | 13 | ATTATGCTAATTT |
| MA0789.1_POU3F4 | 9 | TATGCAAAT |
| MA0790.1_POU4F1 | 14 | ATGAATAATTAATG |
| MA0791.1_POU4F3 | 16 | ATGCATAATTAATGAG |
| MA0792.1_POU5F1B | 9 | TATGCAAAT |
| MA0793.1_POU6F2 | 10 | AGCTCATTAT |
| MA0794.1_PROX1 | 12 | CAAGACGCCTTA |
| MA0795.1_SMAD3 | 10 | CGTCTAGACA |
| MA0796.1_TGIF1 | 12 | TGACAGCTGTCA |
| MA0797.1_TGIF2 | 12 | TGACAGCTGTCA |
| MA0798.1_RFX3 | 16 | CGTTGCCATGGCAACG |
| MA0799.1_RFX4 | 16 | CGTTGCCATGGCAACG |
| MA0800.1_EOMES | 13 | AAGGTGTGAAAAT |
| MA0801.1_MGA | 8 | AGGTGTGA |
| MA0802.1_TBR1 | 10 | AGGTGTGAAA |
| MA0803.1_TBX15 | 8 | AGGTGTGA |
| MA0804.1_TBX19 | 20 | TTTCACACCTAGGTGTGAAA |
| MA0805.1_TBX1 | 8 | AGGTGTGA |
| MA0806.1_TBX4 | 8 | AGGTGTGA |
| MA0807.1_TBX5 | 8 | AGGTGTGA |
| MA0808.1_TEAD3 | 8 | ACATTCCA |
| MA0809.1_TEAD4 | 10 | CACATTCCAT |
| MA0810.1_TFAP2A(var.2) | 12 | TGCCCCCGGGCA |
| MA0811.1_TFAP2B | 12 | TGCCCCAGGGCA |
| MA0812.1_TFAP2B(var.2) | 11 | AGCCTCAGGCA |
| MA0813.1_TFAP2B(var.3) | 13 | TGCCCTGAGGGCA |
| MA0814.1_TFAP2C(var.2) | 11 | AGCCTCAGGCA |
| MA0815.1_TFAP2C(var.3) | 13 | TGCCCTGAGGGCA |
| MA0816.1_Ascl2 | 10 | AGCAGCTGCT |
| MA0817.1_BHLHE23 | 12 | AAACATATGTTT |
| MA0818.1_BHLHE22 | 10 | ACCATATGTT |
| MA0819.1_CLOCK | 10 | AACACGTGTT |
| MA0820.1_FIGLA | 10 | ACCACCTGTT |
| MA0821.1_HES5 | 12 | CGGCACGTGCCA |
| MA0822.1_HES7 | 12 | TGGCACGTGCCA |
| MA0823.1_HEY1 | 10 | GACACGTGCC |
| MA0824.1_ID4 | 10 | TACACCTGTC |
| MA0825.1_MNT | 10 | ACCACGTGCC |
| MA0826.1_OLIG1 | 10 | AACATATGTT |
| MA0827.1_OLIG3 | 10 | ACCATATGTT |
| MA0828.1_SREBF2(var.2) | 10 | ATCACGTGAC |
| MA0829.1_Srebf1(var.2) | 10 | ATCACGTGAC |
| MA0830.1_TCF4 | 10 | CGCACCTGCT |
| MA0831.1_TFE3 | 10 | ATCACGTGAC |
| MA0832.1_Tcf21 | 14 | GCAACAGCTGTTGT |
| MA0833.1_ATF4 | 13 | GGATGATGCAATA |
| MA0834.1_ATF7 | 14 | CGATGACGTCATCG |
| MA0835.1_BATF3 | 14 | TGATGACGTCATCA |
| MA0836.1_CEBPD | 10 | ATTGCGCAAT |
| MA0837.1_CEBPE | 10 | ATTGCGCAAT |
| MA0838.1_CEBPG | 10 | ATTGCGCAAT |
| MA0839.1_CREB3L1 | 14 | ATGCCACGTCATCA |
| MA0840.1_Creb5 | 12 | AATGACGTCACC |
| MA0841.1_NFE2 | 11 | CATGACTCATC |
| MA0842.1_NRL | 11 | AATTTGCTGAC |
| MA0843.1_TEF | 12 | TATTACGTAACA |
| MA0844.1_XBP1 | 14 | AATGCCACGTCATC |
| MA0845.1_FOXB1 | 11 | TATGTAAATAT |
| MA0846.1_FOXC2 | 12 | TAAGTAAACAAA |
| MA0847.1_FOXD2 | 7 | GTAAACA |
| MA0848.1_FOXO4 | 7 | GTAAACA |
| MA0849.1_FOXO6 | 7 | GTAAACA |
| MA0850.1_FOXP3 | 7 | GTAAACA |
| MA0851.1_Foxj3 | 17 | AAAAAGTAAACAAACAC |
| MA0852.1_Foxk1 | 17 | AAAATGTAAACAAACAG |
| MA0853.1_Alx4 | 17 | CGCATTAATTAATTACC |
| MA0854.1_Alx1 | 17 | CGAATTAATTAATCACC |
| MA0855.1_RXRB | 14 | GGGGTCAAAGGTCA |
| MA0856.1_RXRG | 14 | GGGGTCAAAGGTCA |
| MA0857.1_Rarb | 16 | AAAGGTCAAAAGGTCA |
| MA0858.1_Rarb(var.2) | 17 | AGGTCAACTAAAGGTCA |
| MA0859.1_Rarg | 16 | AAGGTCAAAAGGTCAA |
| MA0860.1_Rarg(var.2) | 17 | AAGGTCACGAAAGGTCA |
| MA0861.1_TP73 | 18 | GACATGTCTGGACATGTC |
| MA0862.1_GMEB2 | 8 | TTACGTAA |
| MA0863.1_MTF1 | 14 | TTTGCACACGGCAC |
| MA0864.1_E2F2 | 16 | AAAATGGCGCCATTTT |
| MA0865.1_E2F8 | 12 | TTTCCCGCCAAA |
| MA0866.1_SOX21 | 15 | AACAATGGTAGTGTT |
| MA0867.1_SOX4 | 16 | GAACAATTGCAGTGTT |
| MA0868.1_SOX8 | 16 | AACAATGTGCAGTGTT |
| MA0869.1_Sox11 | 15 | AACAATTTCAGTGTT |
| MA0870.1_Sox1 | 15 | AACAATAACATTGTT |
| MA0871.1_TFEC | 10 | ATCACGTGAC |
| MA0872.1_TFAP2A(var.3) | 13 | TGCCCTGAGGGCA |
| MA0873.1_HOXD12 | 11 | AGTCGTAAAAA |
| MA0874.1_Arx | 17 | GTCCATTAATTAATGGA |
| MA0875.1_BARX1 | 8 | GCAATTAG |
| MA0876.1_BSX | 8 | CCAATTAA |
| MA0877.1_Barhl1 | 10 | GCTAATTGCT |
| MA0878.1_CDX1 | 9 | GCAATAAAA |
| MA0879.1_Dlx1 | 10 | CCTAATTATC |
| MA0880.1_Dlx3 | 8 | CCAATTAC |
| MA0881.1_Dlx4 | 8 | CCAATTAC |
| MA0882.1_DLX6 | 8 | CCAATTAC |
| MA0883.1_Dmbx1 | 17 | TGAACCGGATTAATGAA |
| MA0884.1_DUXA | 13 | CTAATTTAATCAA |
| MA0885.1_Dlx2 | 8 | GCAATTAA |
| MA0886.1_EMX2 | 10 | GCTAATTAGC |
| MA0887.1_EVX1 | 10 | GGTAATTAGC |
| MA0888.1_EVX2 | 10 | GGTAATTAGC |
| MA0889.1_GBX1 | 10 | ACTAATTAGC |
| MA0890.1_GBX2 | 10 | ACCAATTAGC |
| MA0891.1_GSC2 | 10 | CCTAATCCGC |
| MA0892.1_GSX1 | 10 | CCTAATTAAA |
| MA0893.1_GSX2 | 10 | ACTAATTAAA |
| MA0894.1_HESX1 | 10 | GCTAATTGGC |
| MA0895.1_HMBOX1 | 10 | ACTAGTTAAC |
| MA0896.1_Hmx1 | 17 | ACAAGCAATTAATGAAT |
| MA0897.1_Hmx2 | 17 | ACAAGCAATTAAAGAAT |
| MA0898.1_Hmx3 | 17 | ACAAGCAATTAAAGAAT |
| MA0899.1_HOXA10 | 11 | GGTAATAAAAA |
| MA0900.1_HOXA2 | 10 | CCTAATTACC |
| MA0901.1_HOXB13 | 10 | CCAATAAAAC |
| MA0902.1_HOXB2 | 10 | AGTAATTAAC |
| MA0903.1_HOXB3 | 10 | ACTAATTAGC |
| MA0904.1_Hoxb5 | 16 | ACGGTAATTAGCTCAT |
| MA0905.1_HOXC10 | 10 | GTCGTAAAAT |
| MA0906.1_HOXC12 | 11 | GGTCGTAAAAA |
| MA0907.1_HOXC13 | 11 | GCTCGTAAAAA |
| MA0908.1_HOXD11 | 10 | GTCGTAAAAA |
| MA0909.1_HOXD13 | 10 | CCAATAAAAA |
| MA0910.1_Hoxd8 | 17 | TAAATAATTAATGGCTA |
| MA0911.1_Hoxa11 | 12 | GGTCGTAAAATT |
| MA0912.1_Hoxd3 | 16 | TTGAGTTAATTAACCT |
| MA0913.1_Hoxd9 | 10 | GCAATAAAAA |
| MA0914.1_ISL2 | 8 | GCACTTAA |
| MA1099.1_Hes1 | 10 | GGCACGCGTC |
Random model letter frequencies (from non-redundant database):
A 0.275 C 0.225 G 0.225 T 0.275
| Motif | Sequence Name | Strand | Start | End | p-value | q-value | Matched Sequence |
|---|---|---|---|---|---|---|---|
| MA0485.1_Hoxc9 | chr20:22523060-22523768 | + | 62 | 74 | 3.45e-06 | 0.0048 | GGCTATAAATCTA |
| MA0043.2_HLF | chr20:22523060-22523768 | + | 233 | 244 | 4.07e-06 | 0.00565 | TCTTACATAACC |
| MA0103.2_ZEB1 | chr20:22523060-22523768 | + | 265 | 273 | 5.43e-06 | 0.00742 | CCACACCTG |
| MA0522.2_TCF3 | chr20:22523060-22523768 | + | 266 | 275 | 7.14e-06 | 0.0097 | CACACCTGCT |
| MA0830.1_TCF4 | chr20:22523060-22523768 | + | 266 | 275 | 9.15e-06 | 0.0126 | CACACCTGCT |
| MA0025.1_NFIL3 | chr20:22523060-22523768 | - | 232 | 242 | 1.1e-05 | 0.0154 | TTATGTAAGAT |
| MA0843.1_TEF | chr20:22523060-22523768 | + | 233 | 244 | 1.32e-05 | 0.0184 | TCTTACATAACC |
| MA0048.2_NHLH1 | chr20:22523060-22523768 | + | 503 | 512 | 1.63e-05 | 0.0134 | CGCATCTGCG |
| MA0745.1_SNAI2 | chr20:22523060-22523768 | - | 267 | 275 | 1.7e-05 | 0.0237 | AGCAGGTGT |
| MA0593.1_FOXP2 | chr20:22523060-22523768 | - | 390 | 400 | 1.79e-05 | 0.0249 | AAGTAAACACC |
| MA0162.2_EGR1 | chr20:22523060-22523768 | + | 253 | 266 | 1.82e-05 | 0.0246 | CTCTCTCCCCCACC |
| MA0048.2_NHLH1 | chr20:22523060-22523768 | - | 503 | 512 | 1.95e-05 | 0.0134 | CGCAGATGCG |
| MA0639.1_DBP | chr20:22523060-22523768 | - | 233 | 244 | 2e-05 | 0.0212 | GGTTATGTAAGA |
| MA0606.1_NFAT5 | chr20:22523060-22523768 | - | 473 | 482 | 2.04e-05 | 0.0278 | TTTTTCCATG |
| MA0484.1_HNF4G | chr20:22523060-22523768 | - | 101 | 115 | 2.09e-05 | 0.0285 | AAAGACCAGAGTTCC |
| MA0625.1_NFATC3 | chr20:22523060-22523768 | - | 473 | 482 | 2.34e-05 | 0.0324 | TTTTTCCATG |
| MA0594.1_Hoxa9 | chr20:22523060-22523768 | + | 63 | 73 | 2.72e-05 | 0.038 | GCTATAAATCT |
| MA0624.1_NFATC1 | chr20:22523060-22523768 | - | 473 | 482 | 2.83e-05 | 0.0392 | TTTTTCCATG |
| MA0488.1_JUN | chr20:22523060-22523768 | - | 464 | 476 | 2.93e-05 | 0.0408 | CATGTGATGTAAT |
| MA0639.1_DBP | chr20:22523060-22523768 | + | 233 | 244 | 3.05e-05 | 0.0212 | TCTTACATAACC |
| MA0870.1_Sox1 | chr20:22523060-22523768 | + | 564 | 578 | 3.22e-05 | 0.0446 | ATCCATACGATTGTT |
| MA0824.1_ID4 | chr20:22523060-22523768 | + | 266 | 275 | 3.78e-05 | 0.052 | CACACCTGCT |
| MA0840.1_Creb5 | chr20:22523060-22523768 | + | 463 | 474 | 3.97e-05 | 0.0553 | CATTACATCACA |
| MA0043.2_HLF | chr20:22523060-22523768 | + | 463 | 474 | 4.06e-05 | 0.0282 | CATTACATCACA |
| MA0670.1_NFIA | chr20:22523060-22523768 | - | 550 | 559 | 4.14e-05 | 0.0565 | GCTGCCAAGT |
| MA0656.1_JDP2(var.2) | chr20:22523060-22523768 | + | 463 | 474 | 4.36e-05 | 0.0595 | CATTACATCACA |
| MA0869.1_Sox11 | chr20:22523060-22523768 | - | 564 | 578 | 4.37e-05 | 0.0606 | AACAATCGTATGGAT |
| MA0048.2_NHLH1 | chr20:22523060-22523768 | + | 266 | 275 | 4.4e-05 | 0.0201 | CACACCTGCT |
| MA0025.1_NFIL3 | chr20:22523060-22523768 | - | 462 | 472 | 4.48e-05 | 0.0312 | TGATGTAATGC |
| MA0770.1_HSF2 | chr20:22523060-22523768 | + | 399 | 411 | 4.66e-05 | 0.0647 | TTCCAGAATATCT |
| MA0833.1_ATF4 | chr20:22523060-22523768 | - | 463 | 475 | 5.07e-05 | 0.0706 | ATGTGATGTAATG |
| MA0258.2_ESR2 | chr20:22523060-22523768 | - | 187 | 201 | 5.2e-05 | 0.0717 | TGGTCAGGTAGGCCT |
| MA0528.1_ZNF263 | chr20:22523060-22523768 | - | 252 | 272 | 5.28e-05 | 0.036 | AGGTGTGGTGGGGGAGAGAGA |
| MA0842.1_NRL | chr20:22523060-22523768 | + | 372 | 382 | 5.29e-05 | 0.0739 | TCTGTGCTGAC |
| MA0100.2_Myb | chr20:22523060-22523768 | - | 434 | 443 | 5.34e-05 | 0.0744 | GAAACTGCCT |
| MA0528.1_ZNF263 | chr20:22523060-22523768 | - | 249 | 269 | 5.39e-05 | 0.036 | TGTGGTGGGGGAGAGAGAATG |
| MA0843.1_TEF | chr20:22523060-22523768 | + | 463 | 474 | 5.52e-05 | 0.0299 | CATTACATCACA |
| MA0687.1_SPIC | chr20:22523060-22523768 | - | 592 | 605 | 6.25e-05 | 0.0867 | GAGAAGGGGAAGCC |
| MA0480.1_Foxo1 | chr20:22523060-22523768 | + | 389 | 399 | 6.4e-05 | 0.0889 | GGGTGTTTACT |
| MA0843.1_TEF | chr20:22523060-22523768 | - | 233 | 244 | 6.43e-05 | 0.0299 | GGTTATGTAAGA |
| MA0080.4_SPI1 | chr20:22523060-22523768 | - | 592 | 605 | 6.62e-05 | 0.0906 | GAGAAGGGGAAGCC |
| MA0149.1_EWSR1-FLI1 | chr20:22523060-22523768 | - | 345 | 362 | 6.68e-05 | 0.057 | GATGGGAAGGCAGGCGTT |
| MA0807.1_TBX5 | chr20:22523060-22523768 | - | 265 | 272 | 7.13e-05 | 0.0986 | AGGTGTGG |
| MA0073.1_RREB1 | chr20:22523060-22523768 | + | 260 | 279 | 7.2e-05 | 0.0944 | CCCCACCACACCTGCTTGCC |
| MA0671.1_NFIX | chr20:22523060-22523768 | - | 551 | 559 | 7.2e-05 | 0.0942 | GCTGCCAAG |
| MA0865.1_E2F8 | chr20:22523060-22523768 | - | 506 | 517 | 7.45e-05 | 0.101 | TCTCCCGCAGAT |
| MA0105.4_NFKB1 | chr20:22523060-22523768 | - | 589 | 601 | 7.5e-05 | 0.0998 | AGGGGAAGCCTCA |
| MA0148.3_FOXA1 | chr20:22523060-22523768 | - | 421 | 435 | 7.81e-05 | 0.108 | CTTCTGTTTGCTCAC |
| MA0484.1_HNF4G | chr20:22523060-22523768 | + | 690 | 704 | 7.85e-05 | 0.0535 | AGGTTTCAAAGCCCA |
| MA0850.1_FOXP3 | chr20:22523060-22523768 | - | 392 | 398 | 7.93e-05 | 0.111 | GTAAACA |
| MA0849.1_FOXO6 | chr20:22523060-22523768 | - | 392 | 398 | 7.93e-05 | 0.111 | GTAAACA |
| MA0848.1_FOXO4 | chr20:22523060-22523768 | - | 392 | 398 | 7.93e-05 | 0.111 | GTAAACA |
| MA0847.1_FOXD2 | chr20:22523060-22523768 | - | 392 | 398 | 7.93e-05 | 0.111 | GTAAACA |
| MA0042.2_FOXI1 | chr20:22523060-22523768 | - | 392 | 398 | 7.93e-05 | 0.109 | GTAAACA |
| MA0033.2_FOXL1 | chr20:22523060-22523768 | - | 392 | 398 | 7.93e-05 | 0.111 | GTAAACA |
| MA0157.2_FOXO3 | chr20:22523060-22523768 | - | 391 | 398 | 7.93e-05 | 0.111 | GTAAACAC |
| MA0152.1_NFATC2 | chr20:22523060-22523768 | - | 475 | 481 | 7.93e-05 | 0.108 | TTTTCCA |
| MA0031.1_FOXD1 | chr20:22523060-22523768 | - | 391 | 398 | 7.93e-05 | 0.111 | GTAAACAC |
| MA0851.1_Foxj3 | chr20:22523060-22523768 | - | 387 | 403 | 8.01e-05 | 0.111 | TGGAAGTAAACACCCCT |
| MA0779.1_PAX1 | chr20:22523060-22523768 | + | 575 | 591 | 8.11e-05 | 0.11 | TGTTATGGTTCATCTGA |
| MA0866.1_SOX21 | chr20:22523060-22523768 | - | 241 | 255 | 8.17e-05 | 0.113 | GAGAATGTTATGGTT |
| MA0797.1_TGIF2 | chr20:22523060-22523768 | + | 686 | 697 | 8.23e-05 | 0.113 | TGTCAGGTTTCA |
| MA0066.1_PPARG | chr20:22523060-22523768 | + | 185 | 204 | 8.43e-05 | 0.115 | GAAGGCCTACCTGACCACGA |
| MA0781.1_PAX9 | chr20:22523060-22523768 | + | 575 | 591 | 8.51e-05 | 0.115 | TGTTATGGTTCATCTGA |
| MA0149.1_EWSR1-FLI1 | chr20:22523060-22523768 | - | 349 | 366 | 8.57e-05 | 0.057 | AGCAGATGGGAAGGCAGG |
| MA0613.1_FOXG1 | chr20:22523060-22523768 | - | 391 | 398 | 8.79e-05 | 0.123 | GTAAACAC |
| MA0030.1_FOXF2 | chr20:22523060-22523768 | + | 644 | 657 | 9e-05 | 0.0676 | CTTGGATAAACACG |
| MA0647.1_GRHL1 | chr20:22523060-22523768 | + | 145 | 156 | 9.12e-05 | 0.127 | AAAACATGTTCT |
| MA0025.1_NFIL3 | chr20:22523060-22523768 | + | 235 | 245 | 9.32e-05 | 0.0433 | TTACATAACCA |
| MA0820.1_FIGLA | chr20:22523060-22523768 | + | 266 | 275 | 9.38e-05 | 0.128 | CACACCTGCT |
| MA0117.2_Mafb | chr20:22523060-22523768 | + | 372 | 383 | 9.56e-05 | 0.133 | TCTGTGCTGACT |
| MA0030.1_FOXF2 | chr20:22523060-22523768 | - | 390 | 403 | 9.72e-05 | 0.0676 | TGGAAGTAAACACC |
| MA0639.1_DBP | chr20:22523060-22523768 | - | 463 | 474 | 9.73e-05 | 0.0451 | TGTGATGTAATG |
| MA0499.1_Myod1 | chr20:22523060-22523768 | + | 266 | 278 | 9.75e-05 | 0.132 | CACACCTGCTTGC |
| MA0065.2_Pparg::Rxra | chr20:22523060-22523768 | - | 251 | 265 | 9.91e-05 | 0.129 | GTGGGGGAGAGAGAA |
Command line:
fimo /home/zhangbo/Tools/motif_databases/JASPAR/Modi_JASPAR_CORE_2016_vertebrates.meme_modi chr20_22523060_22523768.fasta
Settings:
| output_directory = fimo_out | MEME file name = /home/zhangbo/Tools/motif_databases/JASPAR/Modi_JASPAR_CORE_2016_vertebrates.meme_modi | sequence file name = chr20_22523060_22523768.fasta |
| background file name = non-redundant database | alphabet = nucleotide | max stored scores = 100000 |
| allow clobber = true | compute q-values = true | parse genomic coord. = false |
| text only = false | scan both strands = true | max strand = false |
| threshold type = p-value | output theshold = 0.0001 | pseudocount = 0.1 |
| alpha = 1 | verbosity = 2 |
This information can be useful in the event you wish to report a problem with the FIMO software.