Motif Name	Consensus	P-value	Log P-value	q-value (Benjamini)	# of Target Sequences with Motif(of 236)	% of Target Sequences with Motif	# of Background Sequences with Motif(of 16579)	% of Background Sequences with Motif
ZNF768(Zf)/Rajj-ZNF768-ChIP-Seq(GSE111879)/Homer	RHHCAGAGAGGB	1e-2	-6.110e+00	0.9766	10.0	4.24%	232.1	1.40%
Ascl2(bHLH)/ESC-Ascl2-ChIP-Seq(GSE97712)/Homer	SSRGCAGCTGCH	1e-2	-5.519e+00	0.9766	132.0	55.93%	7823.1	47.03%
PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GCAGCCAAGCRTGACH	1e-1	-4.396e+00	1.0000	56.0	23.73%	2946.8	17.72%
Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer	AGGTGHCAGACA	1e-1	-4.183e+00	1.0000	26.0	11.02%	1160.2	6.98%
PSE(SNAPc)/K562-mStart-Seq/Homer	WAVTCACCMTAASYDAAAAG	1e-1	-4.133e+00	1.0000	42.0	17.80%	2115.5	12.72%
NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer	KCCACGTGAC	1e-1	-3.881e+00	1.0000	97.0	41.10%	5732.5	34.47%
Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer	ACAGCTGTTN	1e-1	-3.648e+00	1.0000	193.0	81.78%	12684.2	76.26%
X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	GGTTGCCATGGCAA	1e-1	-3.610e+00	1.0000	19.0	8.05%	821.9	4.94%
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1e-1	-3.533e+00	1.0000	49.0	20.76%	2643.5	15.89%
CUX1(Homeobox)/K562-CUX1-ChIP-Seq(GSE92882)/Homer	TATCGATNAN	1e-1	-3.361e+00	1.0000	45.0	19.07%	2419.9	14.55%
ZNF415(Zf)/HEK293-ZNF415.GFP-ChIP-Seq(GSE58341)/Homer	GRTGMTRGAGCC	1e-1	-3.360e+00	1.0000	79.0	33.47%	4633.4	27.86%
ZNF16(Zf)/HEK293-ZNF16.GFP-ChIP-Seq(GSE58341)/Homer	MACCTTCYATGGCTCCCTAKTGCCY	1e-1	-3.319e+00	1.0000	3.0	1.27%	49.5	0.30%
ZNF165(Zf)/WHIM12-ZNF165-ChIP-Seq(GSE65937)/Homer	AAGGKGRCGCAGGCA	1e-1	-3.293e+00	1.0000	28.0	11.86%	1380.4	8.30%
ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer	AGGAARCAGCTG	1e-1	-3.190e+00	1.0000	14.0	5.93%	582.2	3.50%
Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer	SNGCACCTGCHS	1e-1	-3.178e+00	1.0000	75.0	31.78%	4406.2	26.49%
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer	YTGCCAAG	1e-1	-3.156e+00	1.0000	150.0	63.56%	9613.3	57.80%
Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer	YTAATYNRATTA	1e-1	-3.013e+00	1.0000	23.0	9.75%	1117.1	6.72%
ZNF519(Zf)/HEK293-ZNF519.GFP-ChIP-Seq(GSE58341)/Homer	GAGSCCGAGC	1e-1	-2.800e+00	1.0000	47.0	19.92%	2648.9	15.93%
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1e-1	-2.754e+00	1.0000	54.0	22.88%	3112.5	18.71%
ZEB1(Zf)/PDAC-ZEB1-ChIP-Seq(GSE64557)/Homer	VCAGGTRDRY	1e-1	-2.692e+00	1.0000	163.0	69.07%	10676.2	64.19%
Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer	SAGATAAGRV	1e-1	-2.583e+00	1.0000	45.0	19.07%	2562.5	15.41%
GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer	CGTGGGTGGTCC	1e-1	-2.555e+00	1.0000	20.0	8.47%	996.3	5.99%
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1e-1	-2.554e+00	1.0000	214.0	90.68%	14544.0	87.44%
Gli2(Zf)/GM2-Gli2-ChIP-Chip(GSE112702)/Homer	YSTGGGTGGTCT	1e-1	-2.471e+00	1.0000	37.0	15.68%	2069.2	12.44%
OCT:OCT-short(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	ATGCATWATGCATRW	1e-1	-2.461e+00	1.0000	36.0	15.25%	2007.2	12.07%
NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer	GGGGGAATCCCC	1e-1	-2.458e+00	1.0000	20.0	8.47%	1009.3	6.07%
Phox2b(Homeobox)/CLBGA-PHOX2B-ChIP-Seq(GSE90683)/Homer	TTAATTNAATTA	1e-1	-2.391e+00	1.0000	12.0	5.08%	544.7	3.27%
Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer	RSCACTYRAG	1e-1	-2.379e+00	1.0000	190.0	80.51%	12749.3	76.65%
IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	GAAAGTGAAAGT	1e-1	-2.347e+00	1.0000	16.0	6.78%	783.6	4.71%
E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer	DNRCAGCTGY	1e-1	-2.311e+00	1.0000	141.0	59.75%	9206.0	55.35%
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1e0	-2.292e+00	1.0000	14.0	5.93%	671.4	4.04%
IRF:BATF(IRF:bZIP)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	CTTTCANTATGACTV	1e0	-2.257e+00	1.0000	10.0	4.24%	443.2	2.66%
Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer	GTCATGCHTGRCTGS	1e0	-2.235e+00	1.0000	41.0	17.37%	2376.0	14.29%
Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer	ATTAACACCT	1e0	-2.183e+00	1.0000	136.0	57.63%	8890.2	53.45%
Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer	AGGTGTGAAM	1e0	-2.179e+00	1.0000	79.0	33.47%	4927.3	29.62%
HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer	TTCTAGAABNTTCTA	1e0	-2.163e+00	1.0000	24.0	10.17%	1300.7	7.82%
CHR(?)/Hela-CellCycle-Expression/Homer	SRGTTTCAAA	1e0	-2.161e+00	1.0000	46.0	19.49%	2719.1	16.35%
ZNF669(Zf)/HEK293-ZNF669.GFP-ChIP-Seq(GSE58341)/Homer	GARTGGTCATCGCCC	1e0	-2.116e+00	1.0000	14.0	5.93%	692.4	4.16%
DMRT6(DM)/Testis-DMRT6-ChIP-Seq(GSE60440)/Homer	YDGHTACAWTGTADC	1e0	-2.060e+00	1.0000	14.0	5.93%	700.0	4.21%
Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer	BBCTTATCTS	1e0	-2.052e+00	1.0000	47.0	19.92%	2811.9	16.91%
Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGMATATDC	1e0	-2.041e+00	1.0000	48.0	20.34%	2880.0	17.32%
ZFP3(Zf)/HEK293-ZFP3.GFP-ChIP-Seq(GSE58341)/Homer	GGGTTTTGAAGGATGARTAGGAGTT	1e0	-2.029e+00	1.0000	1.0	0.42%	9.1	0.05%
IRF8(IRF)/BMDM-IRF8-ChIP-Seq(GSE77884)/Homer	GRAASTGAAAST	1e0	-2.011e+00	1.0000	36.0	15.25%	2098.0	12.61%
Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer	TTRAGTGSYK	1e0	-2.002e+00	1.0000	154.0	65.25%	10233.1	61.52%
HLF(bZIP)/HSC-HLF.Flag-ChIP-Seq(GSE69817)/Homer	RTTATGYAAB	1e0	-1.993e+00	1.0000	48.0	20.34%	2892.4	17.39%
LEF1(HMG)/H1-LEF1-ChIP-Seq(GSE64758)/Homer	CCTTTGATST	1e0	-1.993e+00	1.0000	50.0	21.19%	3025.4	18.19%
Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGCATAATTCA	1e0	-1.986e+00	1.0000	17.0	7.20%	892.0	5.36%
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	1e0	-1.940e+00	1.0000	99.0	41.95%	6377.8	38.35%
Sox7(HMG)/ESC-Sox7-ChIP-Seq(GSE133899)/Homer	VVRRAACAATGG	1e0	-1.900e+00	1.0000	25.0	10.59%	1410.7	8.48%
HEB(bHLH)/mES-Heb-ChIP-Seq(GSE53233)/Homer	VCAGCTGBNN	1e0	-1.880e+00	1.0000	162.0	68.64%	10849.1	65.23%
ZBTB12(Zf)/HEK293-ZBTB12.GFP-ChIP-Seq(GSE58341)/Homer	NGNTCTAGAACCNGV	1e0	-1.878e+00	1.0000	51.0	21.61%	3122.8	18.78%
Tcf7(HMG)/GM12878-TCF7-ChIP-Seq(Encode)/Homer	CTTTGATGTGSB	1e0	-1.838e+00	1.0000	25.0	10.59%	1422.9	8.56%
Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	KGTTGCCATGGCAA	1e0	-1.834e+00	1.0000	29.0	12.29%	1681.9	10.11%
Prop1(Homeobox)/GHFT1-PROP1.biotin-ChIP-Seq(GSE77302)/Homer	NTAATBNAATTA	1e0	-1.810e+00	1.0000	30.0	12.71%	1751.3	10.53%
BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer	CNNBRGCGCCCCCTGSTGGC	1e0	-1.775e+00	1.0000	36.0	15.25%	2152.9	12.94%
Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer	SSCMATWAAA	1e0	-1.774e+00	1.0000	41.0	17.37%	2483.6	14.93%
Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer	NNVVCAGCTGBN	1e0	-1.746e+00	1.0000	144.0	61.02%	9608.4	57.77%
NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer	CYTGGCABNSTGCCAR	1e0	-1.715e+00	1.0000	47.0	19.92%	2899.5	17.43%
Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer	VCAGCTGYTG	1e0	-1.705e+00	1.0000	103.0	43.64%	6737.8	40.51%
E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	NVCACCTGBN	1e0	-1.666e+00	1.0000	136.0	57.63%	9070.2	54.53%
HNF1b(Homeobox)/PDAC-HNF1B-ChIP-Seq(GSE64557)/Homer	GTTAATNATTAA	1e0	-1.647e+00	1.0000	10.0	4.24%	509.5	3.06%
MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer	RTCATGTGAC	1e0	-1.645e+00	1.0000	79.0	33.47%	5097.4	30.65%
RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer	CGGTTGCCATGGCAAC	1e0	-1.643e+00	1.0000	16.0	6.78%	883.7	5.31%
DMRT1(DM)/Testis-DMRT1-ChIP-Seq(GSE64892)/Homer	TWGHWACAWTGTWDC	1e0	-1.618e+00	1.0000	15.0	6.36%	824.9	4.96%
Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer	GTTGCCATGGCAACM	1e0	-1.600e+00	1.0000	17.0	7.20%	954.3	5.74%
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1e0	-1.572e+00	1.0000	191.0	80.93%	13058.9	78.51%
Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer	CVGTSCTCCC	1e0	-1.567e+00	1.0000	176.0	74.58%	11969.8	71.97%
ZNF136(Zf)/HEK293-ZNF136.GFP-ChIP-Seq(GSE58341)/Homer	YTKGATAHAGTATTCTWGGTNGGCA	1e0	-1.542e+00	1.0000	7.0	2.97%	341.0	2.05%
ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer	WDNCTGGGCA	1e0	-1.529e+00	1.0000	126.0	53.39%	8417.3	50.61%
GATA:SCL(Zf,bHLH)/Ter119-SCL-ChIP-Seq(GSE18720)/Homer	CRGCTGBNGNSNNSAGATAA	1e0	-1.525e+00	1.0000	11.0	4.66%	587.3	3.53%
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1e0	-1.523e+00	1.0000	24.0	10.17%	1422.4	8.55%
PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1e0	-1.513e+00	1.0000	47.0	19.92%	2958.5	17.79%
Snail1(Zf)/LS174T-SNAIL1.HA-ChIP-Seq(GSE127183)/Homer	TRCACCTGCY	1e0	-1.498e+00	1.0000	93.0	39.41%	6120.1	36.80%
Tbx21(T-box)/GM12878-TBX21-ChIP-Seq(Encode)/Homer	AGGTGTGAAA	1e0	-1.489e+00	1.0000	74.0	31.36%	4809.6	28.92%
TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer	ACWTCAAAGG	1e0	-1.477e+00	1.0000	7.0	2.97%	347.6	2.09%
GATA3(Zf),DR8/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATSTNDNNDSAGATAASN	1e0	-1.400e+00	1.0000	6.0	2.54%	295.6	1.78%
ZNF41(Zf)/HEK293-ZNF41.GFP-ChIP-Seq(GSE58341)/Homer	CCTCATGGTGYCYTWYTCCCTTGTG	1e0	-1.381e+00	1.0000	3.0	1.27%	121.1	0.73%
bZIP:IRF(bZIP,IRF)/Th17-BatF-ChIP-Seq(GSE39756)/Homer	NAGTTTCABTHTGACTNW	1e0	-1.381e+00	1.0000	28.0	11.86%	1720.2	10.34%
Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer	CCATTGTTYB	1e0	-1.377e+00	1.0000	49.0	20.76%	3138.0	18.87%
Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer	GTRGGTCASTGGGTCA	1e0	-1.359e+00	1.0000	16.0	6.78%	935.0	5.62%
Tbx6(T-box)/ESC-Tbx6-ChIP-Seq(GSE93524)/Homer	DAGGTGTBAA	1e0	-1.357e+00	1.0000	93.0	39.41%	6177.4	37.14%
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	1e0	-1.352e+00	1.0000	45.0	19.07%	2873.6	17.28%
CEBP(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1e0	-1.341e+00	1.0000	42.0	17.80%	2673.3	16.07%
Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer	CGGTCACSCCAC	1e0	-1.328e+00	1.0000	15.0	6.36%	875.9	5.27%
ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer	VAGGTCACNSTGACC	1e0	-1.309e+00	1.0000	28.0	11.86%	1739.3	10.46%
Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATATTC	1e0	-1.299e+00	1.0000	5.0	2.12%	245.6	1.48%
Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer	NNNCTTTCCAGGAAA	1e0	-1.272e+00	1.0000	110.0	46.61%	7402.6	44.51%
Rfx6(HTH)/Min6b1-Rfx6.HA-ChIP-Seq(GSE62844)/Homer	TGTTKCCTAGCAACM	1e0	-1.251e+00	1.0000	113.0	47.88%	7622.1	45.83%
HIC1(Zf)/Treg-ZBTB29-ChIP-Seq(GSE99889)/Homer	TGCCAGCB	1e0	-1.243e+00	1.0000	171.0	72.46%	11735.1	70.56%
Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer	GGGGCTYGKCTGGGA	1e0	-1.238e+00	1.0000	35.0	14.83%	2231.7	13.42%
Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer	NBWGATAAGR	1e0	-1.223e+00	1.0000	63.0	26.69%	4153.6	24.97%
FOXA1:AR(Forkhead,NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	AGTAAACAAAAAAGAACAND	1e0	-1.223e+00	1.0000	4.0	1.69%	192.7	1.16%
TRPS1(Zf)/MCF7-TRPS1-ChIP-Seq(GSE107013)/Homer	AGATAAGANN	1e0	-1.174e+00	1.0000	109.0	46.19%	7377.3	44.35%
GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATAASR	1e0	-1.160e+00	1.0000	87.0	36.86%	5845.2	35.14%
Bcl11a(Zf)/HSPC-BCL11A-ChIP-Seq(GSE104676)/Homer	TYTGACCASWRG	1e0	-1.160e+00	1.0000	64.0	27.12%	4248.9	25.55%
HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer	BSTTCTRGAABVTTCYAGAA	1e0	-1.149e+00	1.0000	18.0	7.63%	1111.7	6.68%
ZNF264(Zf)/HEK293-ZNF264.GFP-ChIP-Seq(GSE58341)/Homer	RGGGCACTAACY	1e0	-1.148e+00	1.0000	71.0	30.08%	4738.5	28.49%
OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	ATGAATATTCATGAG	1e0	-1.120e+00	1.0000	1.0	0.42%	27.5	0.17%
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1e0	-1.111e+00	1.0000	35.0	14.83%	2272.4	13.66%
Hoxd10(Homeobox)/ChickenMSG-Hoxd10.Flag-ChIP-Seq(GSE86088)/Homer	GGCMATGAAA	1e0	-1.105e+00	1.0000	69.0	29.24%	4618.1	27.77%
RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer	AGGTCAAGGTCA	1e0	-1.102e+00	1.0000	4.0	1.69%	204.8	1.23%
Hoxd12(Homeobox)/ChickenMSG-Hoxd12.Flag-ChIP-Seq(GSE86088)/Homer	HDGYAATGAAAN	1e0	-1.098e+00	1.0000	93.0	39.41%	6293.7	37.84%
THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1e0	-1.068e+00	1.0000	44.0	18.64%	2905.3	17.47%
ZNF528(Zf)/HEK293-ZNF528.GFP-ChIP-Seq(GSE58341)/Homer	AGAAATGACTTCCCT	1e0	-1.064e+00	1.0000	1.0	0.42%	29.3	0.18%
Gata6(Zf)/HUG1N-GATA6-ChIP-Seq(GSE51936)/Homer	YCTTATCTBN	1e0	-1.049e+00	1.0000	55.0	23.31%	3672.7	22.08%
TEAD1(TEAD)/HepG2-TEAD1-ChIP-Seq(Encode)/Homer	CYRCATTCCA	1e0	-1.023e+00	1.0000	72.0	30.51%	4864.6	29.25%
RORa(NR)/Liver-Rora-ChIP-Seq(GSE101115)/Homer	AAWCTAGGTCARDNN	1e0	-1.022e+00	1.0000	11.0	4.66%	672.2	4.04%
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1e0	-1.012e+00	1.0000	138.0	58.47%	9500.9	57.12%
HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer	CARRGKBCAAAGTYCA	1e0	-1.001e+00	1.0000	43.0	18.22%	2862.1	17.21%
TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer	YCWGGAATGY	1e0	-9.894e-01	1.0000	45.0	19.07%	3006.0	18.07%
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	ATTTTCCATT	1e0	-9.873e-01	1.0000	62.0	26.27%	4185.6	25.17%
PGR(NR)/EndoStromal-PGR-ChIP-Seq(GSE69539)/Homer	AAGAACATWHTGTTC	1e0	-9.685e-01	1.0000	16.0	6.78%	1021.7	6.14%
Tbr1(T-box)/Cortex-Tbr1-ChIP-Seq(GSE71384)/Homer	AAGGTGTKAA	1e0	-9.636e-01	1.0000	92.0	38.98%	6291.8	37.83%
PAX6(Paired,Homeobox)/Forebrain-Pax6-ChIP-Seq(GSE66961)/Homer	NGTGTTCAVTSAAGCGKAAA	1e0	-9.584e-01	1.0000	8.0	3.39%	484.4	2.91%
HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer	TACGTGCV	1e0	-9.582e-01	1.0000	30.0	12.71%	1982.1	11.92%
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1e0	-9.487e-01	1.0000	163.0	69.07%	11302.4	67.95%
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	1e0	-9.426e-01	1.0000	27.0	11.44%	1782.0	10.71%
Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer	TAATCCCN	1e0	-9.325e-01	1.0000	197.0	83.47%	13729.6	82.55%
ZNF675(Zf)/HEK293-ZNF675.GFP-ChIP-Seq(GSE58341)/Homer	ARGAGGMCAAAATGW	1e0	-9.269e-01	1.0000	11.0	4.66%	692.2	4.16%
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer	BCCATTGTTC	1e0	-9.171e-01	1.0000	60.0	25.42%	4079.9	24.53%
IRF3(IRF)/BMDM-Irf3-ChIP-Seq(GSE67343)/Homer	AGTTTCAKTTTC	1e0	-9.166e-01	1.0000	26.0	11.02%	1721.7	10.35%
LRF(Zf)/Erythroblasts-ZBTB7A-ChIP-Seq(GSE74977)/Homer	AAGACCCYYN	1e0	-9.017e-01	1.0000	161.0	68.22%	11185.2	67.25%
PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer	TGACCTTTGCCCCA	1e0	-8.999e-01	1.0000	87.0	36.86%	5975.3	35.93%
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1e0	-8.991e-01	1.0000	69.0	29.24%	4716.4	28.36%
Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer	TGCGTGGGYG	1e0	-8.922e-01	1.0000	94.0	39.83%	6470.0	38.90%
Six4(Homeobox)/MCF7-SIX4-ChIP-Seq(Encode)/Homer	TGWAAYCTGABACCB	1e0	-8.903e-01	1.0000	6.0	2.54%	362.9	2.18%
RORg(NR)/Liver-Rorc-ChIP-Seq(GSE101115)/Homer	WAABTAGGTCAV	1e0	-8.859e-01	1.0000	7.0	2.97%	430.9	2.59%
E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer	CWGGCGGGAA	1e0	-8.834e-01	1.0000	48.0	20.34%	3259.4	19.60%
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCAT	1e0	-8.792e-01	1.0000	12.0	5.08%	771.8	4.64%
MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1e0	-8.508e-01	1.0000	101.0	42.80%	6985.5	42.00%
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	GATGASTCATCN	1e0	-8.506e-01	1.0000	16.0	6.78%	1053.4	6.33%
c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer	VCCACGTG	1e0	-8.497e-01	1.0000	56.0	23.73%	3833.1	23.05%
TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer	GAGGTCAAAGGTCA	1e0	-8.492e-01	1.0000	13.0	5.51%	847.3	5.09%
Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer	AGGTGTCA	1e0	-8.430e-01	1.0000	193.0	81.78%	13484.8	81.08%
ZNF382(Zf)/HEK293-ZNF382.GFP-ChIP-Seq(GSE58341)/Homer	GNCTGTASTRNTGBCTCHTT	1e0	-8.362e-01	1.0000	2.0	0.85%	103.9	0.62%
Zfp57(Zf)/H1-ZFP57.HA-ChIP-Seq(GSE115387)/Homer	NANTGCSGCA	1e0	-8.347e-01	1.0000	65.0	27.54%	4470.5	26.88%
NFIL3(bZIP)/HepG2-NFIL3-ChIP-Seq(Encode)/Homer	VTTACGTAAYNNNNN	1e0	-8.311e-01	1.0000	38.0	16.10%	2586.9	15.55%
ZNF322(Zf)/HEK293-ZNF322.GFP-ChIP-Seq(GSE58341)/Homer	GAGCCTGGTACTGWGCCTGR	1e0	-8.307e-01	1.0000	33.0	13.98%	2238.9	13.46%
EBF2(EBF)/BrownAdipose-EBF2-ChIP-Seq(GSE97114)/Homer	NABTCCCWDGGGAVH	1e0	-8.059e-01	1.0000	98.0	41.53%	6801.6	40.89%
CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer	GCTAATCC	1e0	-8.039e-01	1.0000	138.0	58.47%	9617.1	57.82%
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer	VNRVCAGCTGGY	1e0	-7.922e-01	1.0000	97.0	41.10%	6739.1	40.52%
AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	TGGCAGTTGG	1e0	-7.921e-01	1.0000	121.0	51.27%	8427.2	50.67%
MNT(bHLH)/HepG2-MNT-ChIP-Seq(Encode)/Homer	DGCACACGTG	1e0	-7.874e-01	1.0000	68.0	28.81%	4706.2	28.29%
Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer	NATGASTCABNN	1e0	-7.624e-01	1.0000	22.0	9.32%	1498.2	9.01%
Duxbl(Homeobox)/NIH3T3-Duxbl.HA-ChIP-Seq(GSE119782)/Homer	TAAYCYAATCAA	1e0	-7.604e-01	1.0000	4.0	1.69%	247.5	1.49%
EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer	DGTCCCYRGGGA	1e0	-7.557e-01	1.0000	27.0	11.44%	1850.8	11.13%
OCT:OCT(POU,Homeobox,IR1)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATWATTCATGA	1e0	-7.550e-01	1.0000	1.0	0.42%	44.6	0.27%
AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer	ATGCCCTGAGGC	1e0	-7.509e-01	1.0000	104.0	44.07%	7257.4	43.63%
Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer	NYTAATCCYB	1e0	-7.501e-01	1.0000	50.0	21.19%	3464.8	20.83%
Brachyury(T-box)/Mesoendoderm-Brachyury-ChIP-exo(GSE54963)/Homer	ANTTMRCASBNNNGTGYKAAN	1e0	-7.470e-01	1.0000	18.0	7.63%	1224.5	7.36%
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1e0	-7.377e-01	1.0000	153.0	64.83%	10715.0	64.42%
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1e0	-7.335e-01	1.0000	11.0	4.66%	739.0	4.44%
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1e0	-7.308e-01	1.0000	9.0	3.81%	600.5	3.61%
GATA(Zf),IR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NAGATWNBNATCTNN	1e0	-7.259e-01	1.0000	5.0	2.12%	322.5	1.94%
FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer	AGGTCANTGACCTB	1e0	-7.224e-01	1.0000	43.0	18.22%	2987.4	17.96%
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	CTGGCAGSCTGCCA	1e0	-7.174e-01	1.0000	41.0	17.37%	2849.1	17.13%
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer	NRAACCRGTTYRAACCRGYT	1e0	-7.099e-01	1.0000	19.0	8.05%	1307.1	7.86%
Pax7(Paired,Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCAATTA	1e0	-7.098e-01	1.0000	4.0	1.69%	255.1	1.53%
Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer	RRSCACTYAA	1e0	-7.065e-01	1.0000	151.0	63.98%	10594.2	63.70%
KLF6(Zf)/PDAC-KLF6-ChIP-Seq(GSE64557)/Homer	MKGGGYGTGGCC	1e0	-7.063e-01	1.0000	143.0	60.59%	10031.2	60.31%
DUX4(Homeobox)/Myoblasts-DUX4.V5-ChIP-Seq(GSE75791)/Homer	NWTAAYCYAATCAWN	1e0	-7.062e-01	1.0000	2.0	0.85%	116.6	0.70%
Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer	RTCACSCCAY	1e0	-7.028e-01	1.0000	17.0	7.20%	1169.6	7.03%
Hoxd11(Homeobox)/ChickenMSG-Hoxd11.Flag-ChIP-Seq(GSE86088)/Homer	VGCCATAAAA	1e0	-7.001e-01	1.0000	127.0	53.81%	8909.5	53.57%
OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAACAATG	1e0	-6.934e-01	1.0000	8.0	3.39%	539.2	3.24%
GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer	NRGVACABNVTGTYCY	1e0	-6.762e-01	1.0000	11.0	4.66%	755.8	4.54%
bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer	KCACGTGMCN	1e0	-6.750e-01	1.0000	31.0	13.14%	2166.5	13.03%
GLIS3(Zf)/Thyroid-Glis3.GFP-ChIP-Seq(GSE103297)/Homer	CTCCCTGGGAGGCCN	1e0	-6.692e-01	1.0000	152.0	64.41%	10689.8	64.27%
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1e0	-6.688e-01	1.0000	134.0	56.78%	9423.6	56.66%
HINFP(Zf)/K562-HINFP.eGFP-ChIP-Seq(Encode)/Homer	TWVGGTCCGC	1e0	-6.671e-01	1.0000	64.0	27.12%	4496.2	27.03%
Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer	YTGWCADY	1e0	-6.589e-01	1.0000	169.0	71.61%	11891.1	71.49%
Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer	TGTCANYT	1e0	-6.571e-01	1.0000	180.0	76.27%	12665.8	76.15%
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer	CYTGTTTACWYW	1e0	-6.544e-01	1.0000	45.0	19.07%	3164.2	19.02%
ZEB2(Zf)/SNU398-ZEB2-ChIP-Seq(GSE103048)/Homer	GNMCAGGTGTGC	1e0	-6.530e-01	1.0000	102.0	43.22%	7182.0	43.18%
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer	WAAGTAAACA	1e0	-6.468e-01	1.0000	48.0	20.34%	3381.0	20.33%
MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	RRCAGCTGYTSY	1e0	-6.382e-01	1.0000	83.0	35.17%	5854.4	35.20%
Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer	CCTGCTGAGH	1e0	-6.366e-01	1.0000	87.0	36.86%	6137.5	36.90%
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	1e0	-6.362e-01	1.0000	93.0	39.41%	6560.6	39.44%
Mef2d(MADS)/Retina-Mef2d-ChIP-Seq(GSE61391)/Homer	GCTATTTTTAGC	1e0	-6.284e-01	1.0000	10.0	4.24%	698.3	4.20%
c-Myc(bHLH)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	VVCCACGTGG	1e0	-6.252e-01	1.0000	40.0	16.95%	2827.3	17.00%
Hoxd13(Homeobox)/ChickenMSG-Hoxd13.Flag-ChIP-Seq(GSE86088)/Homer	NCYAATAAAA	1e0	-6.167e-01	1.0000	81.0	34.32%	5728.6	34.44%
p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer	NNDRCATGYCYNRRCATGYH	1e0	-6.115e-01	1.0000	29.0	12.29%	2056.0	12.36%
CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan_et_al.)/Homer	CCATATATGGNM	1e0	-6.001e-01	1.0000	22.0	9.32%	1563.9	9.40%
Hoxa11(Homeobox)/ChickenMSG-Hoxa11.Flag-ChIP-Seq(GSE86088)/Homer	TTTTATGGCM	1e0	-5.952e-01	1.0000	116.0	49.15%	8210.4	49.36%
GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer	VAGRACAKWCTGTYC	1e0	-5.920e-01	1.0000	17.0	7.20%	1210.8	7.28%
PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer	RGGTCTCTAACY	1e0	-5.914e-01	1.0000	29.0	12.29%	2065.7	12.42%
Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer	CAAAGGTCAG	1e0	-5.902e-01	1.0000	157.0	66.53%	11095.6	66.71%
PU.1:IRF8(ETS:IRF)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	GGAAGTGAAAST	1e0	-5.795e-01	1.0000	17.0	7.20%	1215.9	7.31%
Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer	ACTYKNATTCGTGNTACTTC	1e0	-5.772e-01	1.0000	4.0	1.69%	280.0	1.68%
Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer	GCCACACCCA	1e0	-5.735e-01	1.0000	62.0	26.27%	4416.0	26.55%
Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer	GGTTAAWCATTAA	1e0	-5.625e-01	1.0000	7.0	2.97%	501.7	3.02%
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer	CTAATKGV	1e0	-5.603e-01	1.0000	111.0	47.03%	7885.3	47.41%
PRDM15(Zf)/ESC-Prdm15-ChIP-Seq(GSE73694)/Homer	YCCDNTCCAGGTTTT	1e0	-5.582e-01	1.0000	95.0	40.25%	6759.2	40.64%
Cux2(Homeobox)/Liver-Cux2-ChIP-Seq(GSE35985)/Homer	HNRAATCAAT	1e0	-5.543e-01	1.0000	24.0	10.17%	1728.0	10.39%
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	GCTGTGGTTW	1e0	-5.474e-01	1.0000	54.0	22.88%	3867.5	23.25%
Max(bHLH)/K562-Max-ChIP-Seq(GSE31477)/Homer	RCCACGTGGYYN	1e0	-5.415e-01	1.0000	50.0	21.19%	3588.0	21.57%
SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	AVCAGCTG	1e0	-5.399e-01	1.0000	220.0	93.22%	15516.1	93.29%
BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	DATGASTCAT	1e0	-5.343e-01	1.0000	36.0	15.25%	2595.7	15.61%
ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer	AGTTTCASTTTC	1e0	-5.217e-01	1.0000	5.0	2.12%	366.0	2.20%
E2F(E2F)/Hela-CellCycle-Expression/Homer	TTSGCGCGAAAA	1e0	-5.157e-01	1.0000	10.0	4.24%	734.8	4.42%
EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer	GTCCCCWGGGGA	1e0	-5.077e-01	1.0000	113.0	47.88%	8069.2	48.51%
HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer	RTACGTGC	1e0	-5.056e-01	1.0000	101.0	42.80%	7225.1	43.44%
ERRg(NR)/Kidney-ESRRG-ChIP-Seq(GSE104905)/Homer	GTGACCTTGRVN	1e0	-5.053e-01	1.0000	70.0	29.66%	5033.2	30.26%
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	RGCCATTAAC	1e0	-4.982e-01	1.0000	197.0	83.47%	13950.9	83.88%
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1e0	-4.963e-01	1.0000	71.0	30.08%	5111.5	30.73%
Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer	NNATGASTCATH	1e0	-4.945e-01	1.0000	31.0	13.14%	2261.6	13.60%
RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer	TAGGGCAAAGGTCA	1e0	-4.904e-01	1.0000	101.0	42.80%	7238.6	43.52%
TEAD3(TEA)/HepG2-TEAD3-ChIP-Seq(Encode)/Homer	TRCATTCCAG	1e0	-4.848e-01	1.0000	75.0	31.78%	5404.9	32.50%
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	MTGATGCAAT	1e0	-4.797e-01	1.0000	14.0	5.93%	1041.0	6.26%
BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer	GNCACGTG	1e0	-4.729e-01	1.0000	108.0	45.76%	7747.6	46.58%
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1e0	-4.724e-01	1.0000	20.0	8.47%	1480.3	8.90%
E2F3(E2F)/MEF-E2F3-ChIP-Seq(GSE71376)/Homer	BTKGGCGGGAAA	1e0	-4.683e-01	1.0000	94.0	39.83%	6763.8	40.67%
Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer	NAACAGCTGG	1e0	-4.626e-01	1.0000	87.0	36.86%	6273.6	37.72%
HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer	NTATYGATCH	1e0	-4.571e-01	1.0000	31.0	13.14%	2284.9	13.74%
Zac1(Zf)/Neuro2A-Plagl1-ChIP-Seq(GSE75942)/Homer	HAWGRGGCCM	1e0	-4.517e-01	1.0000	190.0	80.51%	13497.1	81.15%
T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer	ACTTTCGTTTCT	1e0	-4.491e-01	1.0000	1.0	0.42%	71.2	0.43%
ZNF7(Zf)/HepG2-ZNF7.Flag-ChIP-Seq(Encode)/Homer	CTGCCWVCTTTTRTA	1e0	-4.481e-01	1.0000	36.0	15.25%	2650.1	15.93%
MafB(bZIP)/BMM-Mafb-ChIP-Seq(GSE75722)/Homer	WNTGCTGASTCAGCANWTTY	1e0	-4.413e-01	1.0000	25.0	10.59%	1860.4	11.19%
SCRT1(Zf)/HEK293-SCRT1.eGFP-ChIP-Seq(Encode)/Homer	GCAACAGGTG	1e0	-4.332e-01	1.0000	27.0	11.44%	2010.4	12.09%
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	1e0	-4.322e-01	1.0000	83.0	35.17%	6017.6	36.18%
Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer	GGCCYCCTGCTGDGH	1e0	-4.301e-01	1.0000	74.0	31.36%	5380.5	32.35%
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer	SCTGTCAMTCAN	1e0	-4.292e-01	1.0000	22.0	9.32%	1649.9	9.92%
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1e0	-4.272e-01	1.0000	12.0	5.08%	916.1	5.51%
Pax7(Paired,Homeobox),long/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCHGATTAC	1e0	-4.258e-01	1.0000	1.0	0.42%	74.2	0.45%
AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer	SCCTSAGGSCAW	1e0	-4.204e-01	1.0000	124.0	52.54%	8922.5	53.65%
Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer	SCTGTCAVTCAV	1e0	-4.155e-01	1.0000	22.0	9.32%	1657.8	9.97%
STAT6(Stat)/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer	TTCCKNAGAA	1e0	-4.134e-01	1.0000	39.0	16.53%	2891.3	17.38%
Pitx1:Ebox(Homeobox,bHLH)/Hindlimb-Pitx1-ChIP-Seq(GSE41591)/Homer	YTAATTRAWWCCAGATGT	1e0	-4.134e-01	1.0000	8.0	3.39%	623.1	3.75%
Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer	GYMATAAAAH	1e0	-4.110e-01	1.0000	30.0	12.71%	2242.7	13.48%
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1e0	-4.090e-01	1.0000	138.0	58.47%	9915.6	59.62%
Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	DATGASTCATHN	1e0	-4.087e-01	1.0000	36.0	15.25%	2678.5	16.10%
Foxa3(Forkhead)/Liver-Foxa3-ChIP-Seq(GSE77670)/Homer	BSNTGTTTACWYWGN	1e0	-4.042e-01	1.0000	16.0	6.78%	1223.6	7.36%
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	AAACCACARM	1e0	-4.037e-01	1.0000	72.0	30.51%	5262.7	31.64%
TCF4(bHLH)/SHSY5Y-TCF4-ChIP-Seq(GSE96915)/Homer	SMCATCTGKH	1e0	-4.019e-01	1.0000	112.0	47.46%	8097.0	48.68%
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1e0	-3.894e-01	1.0000	3.0	1.27%	245.9	1.48%
NeuroG2(bHLH)/Fibroblast-NeuroG2-ChIP-Seq(GSE75910)/Homer	ACCATCTGTT	1e0	-3.843e-01	1.0000	112.0	47.46%	8114.7	48.79%
Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer	TBGCACGCAA	1e0	-3.838e-01	1.0000	69.0	29.24%	5067.5	30.47%
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1e0	-3.821e-01	1.0000	56.0	23.73%	4139.5	24.89%
CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	AYAGTGCCMYCTRGTGGCCA	1e0	-3.817e-01	1.0000	13.0	5.51%	1012.8	6.09%
Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer	BTBRAGTGSN	1e0	-3.762e-01	1.0000	145.0	61.44%	10438.0	62.76%
Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer	KTGACCTTGA	1e0	-3.742e-01	1.0000	52.0	22.03%	3859.5	23.20%
MYNN(Zf)/HEK293-MYNN.eGFP-ChIP-Seq(Encode)/Homer	TTCAAAWTAAAAGTC	1e0	-3.720e-01	1.0000	13.0	5.51%	1017.9	6.12%
n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	VRCCACGTGG	1e0	-3.709e-01	1.0000	57.0	24.15%	4221.7	25.38%
Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer	ASWTCAAAGG	1e0	-3.707e-01	1.0000	15.0	6.36%	1167.7	7.02%
ZSCAN22(Zf)/HEK293-ZSCAN22.GFP-ChIP-Seq(GSE58341)/Homer	SMCAGTCWGAKGGAGGAGGC	1e0	-3.689e-01	1.0000	9.0	3.81%	717.9	4.32%
Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer	YCTTTGTTCC	1e0	-3.658e-01	1.0000	56.0	23.73%	4154.6	24.98%
Zic2(Zf)/ESC-Zic2-ChIP-Seq(SRP197560)/Homer	CHCAGCRGGRGG	1e0	-3.650e-01	1.0000	59.0	25.00%	4370.6	26.28%
KLF10(Zf)/HEK293-KLF10.GFP-ChIP-Seq(GSE58341)/Homer	GGGGGTGTGTCC	1e0	-3.635e-01	1.0000	72.0	30.51%	5301.7	31.88%
Hoxa9(Homeobox)/ChickenMSG-Hoxa9.Flag-ChIP-Seq(GSE86088)/Homer	RGCAATNAAA	1e0	-3.626e-01	1.0000	138.0	58.47%	9962.7	59.90%
CTCF-SatelliteElement(Zf?)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	TGCAGTTCCMVNWRTGGCCA	1e0	-3.581e-01	1.0000	1.0	0.42%	84.4	0.51%
PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GTCACGCTCSCTGM	1e0	-3.575e-01	1.0000	11.0	4.66%	874.9	5.26%
Klf9(Zf)/GBM-Klf9-ChIP-Seq(GSE62211)/Homer	GCCACRCCCACY	1e0	-3.557e-01	1.0000	72.0	30.51%	5309.8	31.92%
PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer	ACCRTGACTAATTNN	1e0	-3.492e-01	1.0000	9.0	3.81%	726.3	4.37%
Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer	GKVTCADRTTWC	1e0	-3.452e-01	1.0000	17.0	7.20%	1331.0	8.00%
bHLHE41(bHLH)/proB-Bhlhe41-ChIP-Seq(GSE93764)/Homer	KCACGTGMCN	1e0	-3.338e-01	1.0000	106.0	44.92%	7746.5	46.57%
CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	GHCACGTG	1e0	-3.336e-01	1.0000	44.0	18.64%	3319.8	19.96%
Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer	CCWTTGTYYB	1e0	-3.317e-01	1.0000	98.0	41.53%	7183.4	43.19%
Fos(bZIP)/TSC-Fos-ChIP-Seq(GSE110950)/Homer	NDATGASTCAYN	1e0	-3.293e-01	1.0000	31.0	13.14%	2376.3	14.29%
Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer	AGGVNCCTTTGT	1e0	-3.278e-01	1.0000	59.0	25.00%	4407.5	26.50%
Twist(bHLH)/HMLE-TWIST1-ChIP-Seq(Chang_et_al)/Homer	VCAKCTGGNNNCCAGMTGBN	1e0	-3.263e-01	1.0000	9.0	3.81%	737.2	4.43%
p73(p53)/Trachea-p73-ChIP-Seq(PRJNA310161)/Homer	NRRRCAWGTCCDGRCATGYY	1e0	-3.250e-01	1.0000	3.0	1.27%	263.2	1.58%
Fra2(bZIP)/Striatum-Fra2-ChIP-Seq(GSE43429)/Homer	GGATGACTCATC	1e0	-3.200e-01	1.0000	26.0	11.02%	2016.7	12.12%
BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer	NHAACBGYYV	1e0	-3.182e-01	1.0000	109.0	46.19%	7976.6	47.96%
PPARa(NR),DR1/Liver-Ppara-ChIP-Seq(GSE47954)/Homer	VNAGGKCAAAGGTCA	1e0	-3.169e-01	1.0000	88.0	37.29%	6491.4	39.03%
Zfp281(Zf)/ES-Zfp281-ChIP-Seq(GSE81042)/Homer	CCCCTCCCCCAC	1e0	-3.141e-01	1.0000	36.0	15.25%	2755.7	16.57%
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	1e0	-3.136e-01	1.0000	99.0	41.95%	7275.9	43.75%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	RGGTCADNNAGAGGTCAV	1e0	-3.052e-01	1.0000	2.0	0.85%	184.5	1.11%
NPAS(bHLH)/Liver-NPAS-ChIP-Seq(GSE39860)/Homer	NVCACGTG	1e0	-3.041e-01	1.0000	96.0	40.68%	7074.0	42.53%
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan_et_al.)/Homer	CTGTTTAC	1e0	-2.881e-01	1.0000	118.0	50.00%	8647.7	51.99%
JunB(bZIP)/DendriticCells-Junb-ChIP-Seq(GSE36099)/Homer	RATGASTCAT	1e0	-2.850e-01	1.0000	29.0	12.29%	2267.4	13.63%
GFY(?)/Promoter/Homer	ACTACAATTCCC	1e0	-2.789e-01	1.0000	10.0	4.24%	840.1	5.05%
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1e0	-2.778e-01	1.0000	114.0	48.31%	8379.2	50.38%
RBPJ:Ebox(?,bHLH)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	GGGRAARRGRMCAGMTG	1e0	-2.763e-01	1.0000	29.0	12.29%	2276.0	13.68%
Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer	CCATTGTATGCAAAT	1e0	-2.678e-01	1.0000	5.0	2.12%	449.4	2.70%
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1e0	-2.677e-01	1.0000	39.0	16.53%	3020.9	18.16%
CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer	NGYCATAAAWCH	1e0	-2.673e-01	1.0000	42.0	17.80%	3240.0	19.48%
ZNF341(Zf)/EBV-ZNF341-ChIP-Seq(GSE113194)/Homer	GGAACAGCCG	1e0	-2.600e-01	1.0000	70.0	29.66%	5276.5	31.72%
COUP-TFII(NR)/K562-NR2F1-ChIP-Seq(Encode)/Homer	GKBCARAGGTCA	1e0	-2.481e-01	1.0000	110.0	46.61%	8138.8	48.93%
GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer	AAACYKGTTWDACMRGTTTB	1e0	-2.447e-01	1.0000	24.0	10.17%	1932.9	11.62%
Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer	BTCAAGGTCA	1e0	-2.438e-01	1.0000	44.0	18.64%	3413.3	20.52%
Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer	VGCTGWCAVB	1e0	-2.413e-01	1.0000	124.0	52.54%	9132.5	54.91%
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	TGACCTTTNCNT	1e0	-2.365e-01	1.0000	10.0	4.24%	867.3	5.21%
STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer	ABTTCYYRRGAA	1e0	-2.352e-01	1.0000	34.0	14.41%	2687.6	16.16%
ZNF467(Zf)/HEK293-ZNF467.GFP-ChIP-Seq(GSE58341)/Homer	TGGGGAAGGGCM	1e0	-2.352e-01	1.0000	101.0	42.80%	7521.5	45.22%
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NWGGGTGTGGCY	1e0	-2.310e-01	1.0000	23.0	9.75%	1870.9	11.25%
Six2(Homeobox)/NephronProgenitor-Six2-ChIP-Seq(GSE39837)/Homer	GWAAYHTGAKMC	1e0	-2.306e-01	1.0000	67.0	28.39%	5100.6	30.67%
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer	MAATCACTGC	1e0	-2.276e-01	1.0000	42.0	17.80%	3286.5	19.76%
Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer	RAACAATGGN	1e0	-2.263e-01	1.0000	62.0	26.27%	4745.2	28.53%
GATA3(Zf),DR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATGKDGAGATAAG	1e0	-2.260e-01	1.0000	3.0	1.27%	299.4	1.80%
NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WNTGTTTRYTTTGGCA	1e0	-2.208e-01	1.0000	2.0	0.85%	211.8	1.27%
BHLHA15(bHLH)/NIH3T3-BHLHB8.HA-ChIP-Seq(GSE119782)/Homer	NAMCAGCTGK	1e0	-2.197e-01	1.0000	104.0	44.07%	7757.8	46.64%
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer	GGCCATAAATCA	1e0	-2.153e-01	1.0000	22.0	9.32%	1810.2	10.88%
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer	GYCATCMATCAT	1e0	-2.130e-01	1.0000	4.0	1.69%	392.5	2.36%
RAR:RXR(NR),DR0/ES-RAR-ChIP-Seq(GSE56893)/Homer	AGGTCAAGGTCA	1e0	-2.117e-01	1.0000	9.0	3.81%	805.0	4.84%
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1e0	-2.075e-01	1.0000	54.0	22.88%	4191.6	25.20%
Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1e0	-2.060e-01	1.0000	99.0	41.95%	7425.1	44.64%
IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	ACTGAAACCA	1e0	-2.029e-01	1.0000	26.0	11.02%	2126.7	12.79%
FoxD3(forkhead)/ZebrafishEmbryo-Foxd3.biotin-ChIP-seq(GSE106676)/Homer	TGTTTAYTTAGC	1e0	-2.023e-01	1.0000	41.0	17.37%	3245.1	19.51%
HOXA1(Homeobox)/mES-Hoxa1-ChIP-Seq(SRP084292)/Homer	TGATKGATGR	1e0	-1.982e-01	1.0000	11.0	4.66%	975.0	5.86%
Sp2(Zf)/HEK293-Sp2.eGFP-ChIP-Seq(Encode)/Homer	YGGCCCCGCCCC	1e0	-1.935e-01	1.0000	172.0	72.88%	12523.4	75.29%
THRb(NR)/HepG2-THRb.Flag-ChIP-Seq(Encode)/Homer	GGTCACCTGAGGTCA	1e0	-1.894e-01	1.0000	57.0	24.15%	4437.3	26.68%
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1e0	-1.888e-01	1.0000	10.0	4.24%	903.4	5.43%
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	ATTTCCTGTN	1e0	-1.855e-01	1.0000	52.0	22.03%	4078.7	24.52%
Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	TATGCWAATBAV	1e0	-1.830e-01	1.0000	13.0	5.51%	1147.3	6.90%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e0	-1.813e-01	1.0000	6.0	2.54%	581.3	3.49%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e0	-1.813e-01	1.0000	6.0	2.54%	581.3	3.49%
OCT:OCT(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	YATGCATATRCATRT	1e0	-1.802e-01	1.0000	2.0	0.85%	228.1	1.37%
ZNF652/HepG2-ZNF652.Flag-ChIP-Seq(Encode)/Homer	TTAACCCTTTVNKKN	1e0	-1.787e-01	1.0000	14.0	5.93%	1230.4	7.40%
SpiB(ETS)/OCILY3-SPIB-ChIP-Seq(GSE56857)/Homer	AAAGRGGAAGTG	1e0	-1.784e-01	1.0000	19.0	8.05%	1620.4	9.74%
Hoxa13(Homeobox)/ChickenMSG-Hoxa13.Flag-ChIP-Seq(GSE86088)/Homer	CYHATAAAAN	1e0	-1.706e-01	1.0000	113.0	47.88%	8477.7	50.97%
Sox21(HMG)/ESC-SOX21-ChIP-Seq(GSE110505)/Homer	BCCWTTGTBYKV	1e0	-1.699e-01	1.0000	100.0	42.37%	7560.0	45.45%
Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer	BTCAAGGTCA	1e0	-1.681e-01	1.0000	55.0	23.31%	4326.9	26.01%
PRDM10(Zf)/HEK293-PRDM10.eGFP-ChIP-Seq(Encode)/Homer	TGGTACATTCCA	1e0	-1.624e-01	1.0000	47.0	19.92%	3748.5	22.54%
Oct11(POU,Homeobox)/NCIH1048-POU2F3-ChIP-seq(GSE115123)/Homer	GATTTGCATA	1e0	-1.615e-01	1.0000	14.0	5.93%	1248.1	7.50%
p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	ACATGCCCGGGCAT	1e0	-1.603e-01	1.0000	1.0	0.42%	134.3	0.81%
TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer	CCWGGAATGY	1e0	-1.598e-01	1.0000	33.0	13.98%	2710.1	16.29%
Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1e0	-1.596e-01	1.0000	23.0	9.75%	1951.8	11.73%
ZNF692(Zf)/HEK293-ZNF692.GFP-ChIP-Seq(GSE58341)/Homer	GTGGGCCCCA	1e0	-1.586e-01	1.0000	16.0	6.78%	1409.7	8.48%
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	1e0	-1.574e-01	1.0000	41.0	17.37%	3312.4	19.91%
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	1e0	-1.549e-01	1.0000	72.0	30.51%	5586.9	33.59%
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer	YCATYAATCA	1e0	-1.546e-01	1.0000	42.0	17.80%	3391.9	20.39%
NFY(CCAAT)/Promoter/Homer	RGCCAATSRG	1e0	-1.516e-01	1.0000	74.0	31.36%	5738.0	34.50%
STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer	NYTTCCWGGAAR	1e0	-1.500e-01	1.0000	66.0	27.97%	5161.1	31.03%
STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer	RTTTCTNAGAAA	1e0	-1.500e-01	1.0000	24.0	10.17%	2041.5	12.27%
p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer	RRCATGYCYRGRCATGYYYN	1e0	-1.490e-01	1.0000	4.0	1.69%	431.8	2.60%
p53(p53)/Saos-p53-ChIP-Seq/Homer	RRCATGYCYRGRCATGYYYN	1e0	-1.490e-01	1.0000	4.0	1.69%	431.8	2.60%
Twist2(bHLH)/Myoblast-Twist2.Ty1-ChIP-Seq(GSE127998)/Homer	MCAGCTGBYH	1e0	-1.486e-01	1.0000	123.0	52.12%	9223.6	55.46%
GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer	RGGATTAR	1e0	-1.486e-01	1.0000	60.0	25.42%	4727.6	28.42%
Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer	NNNVCTGWGYAAACASN	1e0	-1.459e-01	1.0000	54.0	22.88%	4294.0	25.82%
NFAT:AP1(RHD,bZIP)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	SARTGGAAAAWRTGAGTCAB	1e0	-1.446e-01	1.0000	8.0	3.39%	779.4	4.69%
GFY-Staf(?,Zf)/Promoter/Homer	RACTACAATTCCCAGAAKGC	1e0	-1.425e-01	1.0000	8.0	3.39%	781.1	4.70%
Hoxa10(Homeobox)/ChickenMSG-Hoxa10.Flag-ChIP-Seq(GSE86088)/Homer	GGYAATGAAA	1e0	-1.401e-01	1.0000	28.0	11.86%	2362.8	14.21%
THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer	TRAGGTCA	1e0	-1.387e-01	1.0000	203.0	86.02%	14670.5	88.20%
Dlx3(Homeobox)/Kerainocytes-Dlx3-ChIP-Seq(GSE89884)/Homer	NDGTAATTAC	1e0	-1.367e-01	1.0000	27.0	11.44%	2291.8	13.78%
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer	ADBTAATTAR	1e0	-1.349e-01	1.0000	74.0	31.36%	5772.7	34.71%
Barx1(Homeobox)/Stomach-Barx1.3xFlag-ChIP-Seq(GSE69483)/Homer	AAACMATTAN	1e0	-1.335e-01	1.0000	19.0	8.05%	1677.9	10.09%
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	1e0	-1.332e-01	1.0000	46.0	19.49%	3727.9	22.41%
Hand2(bHLH)/Mesoderm-Hand2-ChIP-Seq(GSE61475)/Homer	TGACANARRCCAGRC	1e0	-1.306e-01	1.0000	38.0	16.10%	3135.0	18.85%
HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer	TTTTATKRGG	1e0	-1.294e-01	1.0000	51.0	21.61%	4105.3	24.68%
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer	CYAAAAATAG	1e0	-1.276e-01	1.0000	18.0	7.63%	1607.4	9.66%
COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer	AGRGGTCA	1e0	-1.262e-01	1.0000	125.0	52.97%	9413.3	56.60%
KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer	DGGGYGKGGC	1e0	-1.247e-01	1.0000	153.0	64.83%	11352.7	68.26%
USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	SGTCACGTGR	1e0	-1.235e-01	1.0000	36.0	15.25%	2998.6	18.03%
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer	WGGGGATTTCCC	1e0	-1.224e-01	1.0000	41.0	17.37%	3377.0	20.30%
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer	CCWGGAATGY	1e0	-1.224e-01	1.0000	57.0	24.15%	4562.7	27.43%
Hnf6b(Homeobox)/LNCaP-Hnf6b-ChIP-Seq(GSE106305)/Homer	TATTGAYY	1e0	-1.219e-01	1.0000	39.0	16.53%	3227.8	19.41%
ZNF317(Zf)/HEK293-ZNF317.GFP-ChIP-Seq(GSE58341)/Homer	GTCWGCTGTYYCTCT	1e0	-1.217e-01	1.0000	5.0	2.12%	543.8	3.27%
Lhx1(Homeobox)/EmbryoCarcinoma-Lhx1-ChIP-Seq(GSE70957)/Homer	NNYTAATTAR	1e0	-1.212e-01	1.0000	47.0	19.92%	3826.5	23.01%
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1e0	-1.165e-01	1.0000	19.0	8.05%	1703.1	10.24%
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer	NATTTCCNGGAAAT	1e0	-1.098e-01	1.0000	19.0	8.05%	1714.1	10.31%
MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer	GCTGASTCAGCA	1e0	-1.084e-01	1.0000	13.0	5.51%	1235.5	7.43%
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1e0	-1.078e-01	1.0000	133.0	56.36%	10016.1	60.22%
TFE3(bHLH)/MEF-TFE3-ChIP-Seq(GSE75757)/Homer	GTCACGTGACYV	1e0	-1.044e-01	1.0000	6.0	2.54%	650.2	3.91%
KLF3(Zf)/MEF-Klf3-ChIP-Seq(GSE44748)/Homer	NRGCCCCRCCCHBNN	1e0	-1.002e-01	1.0000	87.0	36.86%	6795.4	40.86%
Ronin(THAP)/ES-Thap11-ChIP-Seq(GSE51522)/Homer	RACTACAACTCCCAGVAKGC	1e0	-1.001e-01	1.0000	6.0	2.54%	655.4	3.94%
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1e0	-9.929e-02	1.0000	129.0	54.66%	9762.4	58.69%
FOXK1(Forkhead)/HEK293-FOXK1-ChIP-Seq(GSE51673)/Homer	NVWTGTTTAC	1e0	-9.785e-02	1.0000	48.0	20.34%	3956.0	23.78%
NRF(NRF)/Promoter/Homer	STGCGCATGCGC	1e0	-9.082e-02	1.0000	29.0	12.29%	2533.6	15.23%
FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer	TRTTTACTTW	1e0	-9.013e-02	1.0000	44.0	18.64%	3676.8	22.11%
Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer	CTTCCGGGAA	1e0	-8.866e-02	1.0000	46.0	19.49%	3830.0	23.03%
Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	CACAGCAGGGGG	1e0	-8.733e-02	1.0000	51.0	21.61%	4207.2	25.30%
CREB5(bZIP)/LNCaP-CREB5.V5-ChIP-Seq(GSE137775)/Homer	VVATGACGTCAT	1e0	-8.703e-02	1.0000	21.0	8.90%	1917.0	11.53%
Npas4(bHLH)/Neuron-Npas4-ChIP-Seq(GSE127793)/Homer	NHRTCACGACDN	1e0	-8.546e-02	1.0000	74.0	31.36%	5902.3	35.49%
RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	SAAACCACAG	1e0	-8.534e-02	1.0000	48.0	20.34%	3989.9	23.99%
ETS:RUNX(ETS,Runt)/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer	RCAGGATGTGGT	1e0	-8.517e-02	1.0000	8.0	3.39%	851.0	5.12%
Atf7(bZIP)/3T3L1-Atf7-ChIP-Seq(GSE56872)/Homer	NGRTGACGTCAY	1e0	-8.513e-02	1.0000	32.0	13.56%	2778.4	16.70%
ETV4(ETS)/HepG2-ETV4-ChIP-Seq(ENCODE)/Homer	ACCGGAAGTG	1e0	-8.299e-02	1.0000	122.0	51.69%	9325.7	56.07%
Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer	ATATGCAAAT	1e0	-7.805e-02	1.0000	10.0	4.24%	1035.1	6.22%
NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer	GGAAATTCCC	1e0	-7.771e-02	1.0000	3.0	1.27%	402.3	2.42%
HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer	GCACGTACCC	1e0	-7.757e-02	1.0000	32.0	13.56%	2798.2	16.82%
NFE2L2(bZIP)/HepG2-NFE2L2-ChIP-Seq(Encode)/Homer	AWWWTGCTGAGTCAT	1e0	-7.440e-02	1.0000	1.0	0.42%	185.2	1.11%
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	ATGACGTCATCY	1e0	-7.109e-02	1.0000	19.0	8.05%	1793.4	10.78%
KLF14(Zf)/HEK293-KLF14.GFP-ChIP-Seq(GSE58341)/Homer	RGKGGGCGKGGC	1e0	-6.960e-02	1.0000	176.0	74.58%	13047.8	78.45%
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	1e0	-6.665e-02	1.0000	32.0	13.56%	2831.0	17.02%
Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer	SVYTTCCNGGAARB	1e0	-6.359e-02	1.0000	55.0	23.31%	4583.3	27.56%
GATA(Zf),IR3/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NNNNNBAGATAWYATCTVHN	1e0	-6.325e-02	1.0000	4.0	1.69%	521.3	3.13%
Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAW	1e0	-6.316e-02	1.0000	17.0	7.20%	1651.2	9.93%
ZKSCAN1(Zf)/HepG2-ZKSCAN1-ChIP-Seq(Encode)/Homer	GCACAYAGTAGGKCY	1e0	-6.052e-02	1.0000	1.0	0.42%	199.2	1.20%
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1e0	-5.624e-02	1.0000	1.0	0.42%	204.0	1.23%
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1e0	-5.457e-02	1.0000	58.0	24.58%	4843.1	29.12%
EAR2(NR)/K562-NR2F6-ChIP-Seq(Encode)/Homer	NRBCARRGGTCA	1e0	-5.292e-02	1.0000	96.0	40.68%	7613.8	45.78%
Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer	WATGCAAATGAG	1e0	-5.012e-02	1.0000	15.0	6.36%	1523.0	9.16%
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	MACAGGAAGT	1e0	-4.890e-02	1.0000	20.0	8.47%	1939.9	11.66%
CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	NTNATGCAAYMNNHTGMAAY	1e0	-4.847e-02	1.0000	4.0	1.69%	548.8	3.30%
FoxL2(Forkhead)/Ovary-FoxL2-ChIP-Seq(GSE60858)/Homer	WWTRTAAACAVG	1e0	-4.822e-02	1.0000	32.0	13.56%	2896.2	17.41%
LHX9(Homeobox)/Hct116-LHX9.V5-ChIP-Seq(GSE116822)/Homer	NGCTAATTAG	1e0	-4.661e-02	1.0000	65.0	27.54%	5399.7	32.46%
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1e0	-4.424e-02	1.0000	13.0	5.51%	1373.5	8.26%
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	1e0	-3.879e-02	1.0000	95.0	40.25%	7620.5	45.82%
DLX5(Homeobox)/BasalGanglia-Dlx5-ChIP-seq(GSE124936)/Homer	SSTAATTA	1e0	-3.459e-02	1.0000	30.0	12.71%	2803.6	16.86%
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1e0	-2.929e-02	1.0000	66.0	27.97%	5582.0	33.56%
NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	GATGACTCAGCA	1e0	-2.918e-02	1.0000	1.0	0.42%	249.0	1.50%
VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer	ARAGGTCANWGAGTTCANNN	1e0	-2.871e-02	1.0000	13.0	5.51%	1435.4	8.63%
Mef2b(MADS)/HEK293-Mef2b.V5-ChIP-Seq(GSE67450)/Homer	GCTATTTTTGGM	1e0	-2.718e-02	1.0000	34.0	14.41%	3164.6	19.03%
Sp5(Zf)/mES-Sp5.Flag-ChIP-Seq(GSE72989)/Homer	RGKGGGCGGAGC	1e0	-2.561e-02	1.0000	139.0	58.90%	10787.4	64.86%
KLF1(Zf)/HUDEP2-KLF1-CutnRun(GSE136251)/Homer	VDGGGYGGGGCY	1e0	-2.371e-02	1.0000	124.0	52.54%	9775.0	58.77%
WT1(Zf)/Kidney-WT1-ChIP-Seq(GSE90016)/Homer	MCTCCCMCRCAB	1e0	-1.863e-02	1.0000	66.0	27.97%	5680.6	34.15%
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	VACAGGAAAT	1e0	-1.823e-02	1.0000	51.0	21.61%	4557.5	27.40%
LXRE(NR),DR4/RAW-LXRb.biotin-ChIP-Seq(GSE21512)/Homer	RGGTTACTANAGGTCA	1e0	-1.499e-02	1.0000	1.0	0.42%	295.9	1.78%
Foxf1(Forkhead)/Lung-Foxf1-ChIP-Seq(GSE77951)/Homer	WWATRTAAACAN	1e0	-1.456e-02	1.0000	32.0	13.56%	3118.5	18.75%
Foxo3(Forkhead)/U2OS-Foxo3-ChIP-Seq(E-MTAB-2701)/Homer	DGTAAACA	1e0	-1.300e-02	1.0000	28.0	11.86%	2814.2	16.92%
Atf2(bZIP)/3T3L1-Atf2-ChIP-Seq(GSE56872)/Homer	NRRTGACGTCAT	1e0	-1.208e-02	1.0000	19.0	8.05%	2076.0	12.48%
E-box(bHLH)/Promoter/Homer	SSGGTCACGTGA	1e0	-1.188e-02	1.0000	5.0	2.12%	791.8	4.76%
ZBTB18(Zf)/HEK293-ZBTB18.GFP-ChIP-Seq(GSE58341)/Homer	AACATCTGGA	1e0	-1.095e-02	1.0000	31.0	13.14%	3086.6	18.56%
DLX2(Homeobox)/BasalGanglia-Dlx2-ChIP-seq(GSE124936)/Homer	NNNTAATTAS	1e0	-1.048e-02	1.0000	59.0	25.00%	5273.3	31.70%
PBX2(Homeobox)/K562-PBX2-ChIP-Seq(Encode)/Homer	RTGATTKATRGN	1e0	-1.037e-02	1.0000	31.0	13.14%	3095.3	18.61%
FOXK2(Forkhead)/U2OS-FOXK2-ChIP-Seq(E-MTAB-2204)/Homer	SCHTGTTTACAT	1e0	-1.014e-02	1.0000	26.0	11.02%	2690.2	16.17%
ELF3(ETS)/PDAC-ELF3-ChIP-Seq(GSE64557)/Homer	ANCAGGAAGT	1e0	-1.003e-02	1.0000	53.0	22.46%	4826.9	29.02%
ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer	GGVTCTCGCGAGAAC	1e0	-9.309e-03	1.0000	4.0	1.69%	707.7	4.26%
SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer	CAAGGHCANV	1e0	-9.131e-03	1.0000	27.0	11.44%	2789.1	16.77%
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer	ASWTCCTGBT	1e0	-8.643e-03	1.0000	84.0	35.59%	7160.8	43.05%
NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer	CTGCGCATGCGC	1e0	-7.450e-03	1.0000	22.0	9.32%	2402.5	14.44%
DLX1(Homeobox)/BasalGanglia-Dlx1-ChIP-seq(GSE124936)/Homer	NSNNTAATTA	1e0	-6.520e-03	1.0000	51.0	21.61%	4752.7	28.57%
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer	GKTAATGR	1e0	-6.354e-03	1.0000	96.0	40.68%	8084.0	48.60%
ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	ACAGGAAGTG	1e0	-5.637e-03	1.0000	122.0	51.69%	9928.9	59.70%
ZNF189(Zf)/HEK293-ZNF189.GFP-ChIP-Seq(GSE58341)/Homer	TGGAACAGMA	1e0	-5.629e-03	1.0000	58.0	24.58%	5315.0	31.96%
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer	TAATTAGN	1e0	-5.427e-03	1.0000	38.0	16.10%	3765.4	22.64%
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1e0	-2.479e-03	1.0000	16.0	6.78%	2024.7	12.17%
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	1e0	-2.162e-03	1.0000	71.0	30.08%	6461.8	38.85%
Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer	NGCGTGGGCGGR	1e0	-2.037e-03	1.0000	17.0	7.20%	2139.2	12.86%
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1e0	-1.880e-03	1.0000	3.0	1.27%	728.2	4.38%
En1(Homeobox)/SUM149-EN1-ChIP-Seq(GSE120957)/Homer	NDCTAATTAS	1e0	-1.855e-03	1.0000	78.0	33.05%	7005.1	42.12%
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	1e0	-1.252e-03	1.0000	54.0	22.88%	5261.4	31.63%
EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	AVCAGGAAGT	1e0	-1.214e-03	1.0000	94.0	39.83%	8236.6	49.52%
RARa(NR)/K562-RARa-ChIP-Seq(Encode)/Homer	TTGAMCTTTG	1e0	-2.330e-04	1.0000	147.0	62.29%	12079.7	72.63%
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1e0	-2.100e-04	1.0000	65.0	27.54%	6374.6	38.33%
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	1e0	-9.300e-05	1.0000	98.0	41.53%	8905.3	53.54%
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	RACCGGAAGT	1e0	-6.900e-05	1.0000	79.0	33.47%	7576.6	45.55%
YY1(Zf)/Promoter/Homer	CAAGATGGCGGC	1e0	-5.900e-05	1.0000	3.0	1.27%	1003.2	6.03%
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	ACAGGAAGTG	1e0	-3.700e-05	1.0000	80.0	33.90%	7734.7	46.50%
Elf4(ETS)/BMDM-Elf4-ChIP-Seq(GSE88699)/Homer	ACTTCCKGKT	1e0	-5.000e-06	1.0000	75.0	31.78%	7612.9	45.77%
Etv2(ETS)/ES-ER71-ChIP-Seq(GSE59402)/Homer	NNAYTTCCTGHN	1e0	-1.000e-06	1.0000	60.0	25.42%	6657.8	40.03%
ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	AACCGGAAGT	1e0	-1.000e-06	1.0000	101.0	42.80%	9699.4	58.32%
ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer	AGGCCTRG	1e0	-0.000e+00	1.0000	83.0	35.17%	8687.4	52.23%
ETS(ETS)/Promoter/Homer	AACCGGAAGT	1e0	-0.000e+00	1.0000	23.0	9.75%	3926.1	23.60%
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	AVCCGGAAGT	1e0	-0.000e+00	1.0000	43.0	18.22%	6001.6	36.08%
ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer	AGGCCTAG	1e0	-0.000e+00	1.0000	117.0	49.58%	11449.3	68.84%
DUX(Homeobox)/C2C12-Dux-ChIP-Seq(GSE87279)/Homer	BCWGATTCAATCAAN	1e0	0.000e+00	1.0000	0.0	0.00%	5.9	0.04%
EBNA1(EBV-virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	1e0	0.000e+00	1.0000	0.0	0.00%	119.7	0.72%
Pax7(Paired,Homeobox),longest/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	NTAATTDGCYAATTANNWWD	1e0	0.000e+00	1.0000	0.0	0.00%	62.7	0.38%
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1e0	0.000e+00	1.0000	0.0	0.00%	130.3	0.78%
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1e0	0.000e+00	1.0000	0.0	0.00%	217.1	1.31%