cat ../../tissue.txt|while read tis
do
  cd ${tis}
  for file in `ls *.bed`
  do

    dir=$(echo $file|sed 's/\.bed//')
    echo $file
    echo $dir
    findMotifsGenome.pl $file mm10 $dir -size given -preparsedDir preparsed

   done
  
   cd ../ 
done