Information for 7-GGCTGGCC (Motif 11)


Reverse Opposite:

p-value:1e-40
log p-value:-9.292e+01
Information Content per bp:1.906
Number of Target Sequences with motif549.0
Percentage of Target Sequences with motif20.08%
Number of Background Sequences with motif5087.4
Percentage of Background Sequences with motif11.23%
Average Position of motif in Targets86.3 +/- 78.9bp
Average Position of motif in Background94.3 +/- 64.1bp
Strand Bias (log2 ratio + to - strand density)-0.0
Multiplicity (# of sites on avg that occur together)1.28
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

POL010.1_DCE_S_III/Jaspar

Match Rank:1
Score:0.69
Offset:0
Orientation:reverse strand
Alignment:GGCTGGCC
NGCTN---

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:2
Score:0.67
Offset:-2
Orientation:forward strand
Alignment:--GGCTGGCC
TWGTCTGV--

PB0029.1_Hic1_1/Jaspar

Match Rank:3
Score:0.64
Offset:-4
Orientation:reverse strand
Alignment:----GGCTGGCC----
NGTAGGTTGGCATNNN

POL009.1_DCE_S_II/Jaspar

Match Rank:4
Score:0.63
Offset:1
Orientation:forward strand
Alignment:GGCTGGCC
-GCTGTG-

PB0151.1_Myf6_2/Jaspar

Match Rank:5
Score:0.62
Offset:-5
Orientation:reverse strand
Alignment:-----GGCTGGCC--
GGNGCGNCTGTTNNN

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:6
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--GGCTGGCC
CTGTCTGG--

GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer

Match Rank:7
Score:0.60
Offset:-3
Orientation:forward strand
Alignment:---GGCTGGCC-
CGTGGGTGGTCC

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:8
Score:0.59
Offset:3
Orientation:reverse strand
Alignment:GGCTGGCC-
---TGACCT

MA0117.1_Mafb/Jaspar

Match Rank:9
Score:0.59
Offset:1
Orientation:forward strand
Alignment:GGCTGGCC-
-GCTGACGC

Sp1(Zf)/Promoter/Homer

Match Rank:10
Score:0.59
Offset:-3
Orientation:reverse strand
Alignment:---GGCTGGCC-
GGGGGCGGGGCC