Information for 11-CACGTGAT (Motif 14)


Reverse Opposite:

p-value:1e-31
log p-value:-7.256e+01
Information Content per bp:1.957
Number of Target Sequences with motif281.0
Percentage of Target Sequences with motif10.28%
Number of Background Sequences with motif2163.5
Percentage of Background Sequences with motif4.77%
Average Position of motif in Targets106.9 +/- 80.1bp
Average Position of motif in Background94.6 +/- 58.4bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.04
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer

Match Rank:1
Score:0.90
Offset:-2
Orientation:reverse strand
Alignment:--CACGTGAT
ACCACGTGAC

MF0007.1_bHLH(zip)_class/Jaspar

Match Rank:2
Score:0.89
Offset:0
Orientation:reverse strand
Alignment:CACGTGAT
CACGTGNT

USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer

Match Rank:3
Score:0.87
Offset:-1
Orientation:reverse strand
Alignment:-CACGTGAT-
TCACGTGACC

CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer

Match Rank:4
Score:0.87
Offset:0
Orientation:reverse strand
Alignment:CACGTGAT
CACGTGDC

NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer

Match Rank:5
Score:0.87
Offset:-2
Orientation:forward strand
Alignment:--CACGTGAT
KCCACGTGAC

bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer

Match Rank:6
Score:0.87
Offset:-1
Orientation:forward strand
Alignment:-CACGTGAT-
KCACGTGMCN

BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer

Match Rank:7
Score:0.87
Offset:-2
Orientation:forward strand
Alignment:--CACGTGAT
GNCACGTG--

MA0004.1_Arnt/Jaspar

Match Rank:8
Score:0.87
Offset:0
Orientation:forward strand
Alignment:CACGTGAT
CACGTG--

Max(bHLH)/K562-Max-ChIP-Seq(GSE31477)/Homer

Match Rank:9
Score:0.86
Offset:-2
Orientation:forward strand
Alignment:--CACGTGAT--
ACCACGTGGTNN

PB0043.1_Max_1/Jaspar

Match Rank:10
Score:0.85
Offset:-4
Orientation:forward strand
Alignment:----CACGTGAT----
TGACCACGTGGTCGGG