Information for 12-AGCACTCG (Motif 15)


Reverse Opposite:

p-value:1e-30
log p-value:-7.082e+01
Information Content per bp:1.834
Number of Target Sequences with motif489.0
Percentage of Target Sequences with motif17.89%
Number of Background Sequences with motif4746.7
Percentage of Background Sequences with motif10.48%
Average Position of motif in Targets91.4 +/- 78.1bp
Average Position of motif in Background95.8 +/- 60.0bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.04
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0099.1_Zfp691_1/Jaspar

Match Rank:1
Score:0.76
Offset:-6
Orientation:reverse strand
Alignment:------AGCACTCG---
NNNNTGAGCACTGTNNG

Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer

Match Rank:2
Score:0.75
Offset:-1
Orientation:forward strand
Alignment:-AGCACTCG-
AAGCACTTAA

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:3
Score:0.73
Offset:-1
Orientation:forward strand
Alignment:-AGCACTCG-
AASCACTCAA

Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer

Match Rank:4
Score:0.72
Offset:0
Orientation:forward strand
Alignment:AGCACTCG--
RSCACTYRAG

PB0152.1_Nkx3-1_2/Jaspar

Match Rank:5
Score:0.65
Offset:-5
Orientation:reverse strand
Alignment:-----AGCACTCG----
TTCNAAGTACTTNNNNN

POL010.1_DCE_S_III/Jaspar

Match Rank:6
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-AGCACTCG
CAGCC----

MA0503.1_Nkx2-5_(var.2)/Jaspar

Match Rank:7
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-AGCACTCG--
AGCCACTCAAG

PH0116.1_Nkx2-9/Jaspar

Match Rank:8
Score:0.64
Offset:-5
Orientation:forward strand
Alignment:-----AGCACTCG----
TTTTAAGTACTTAAATT

MA0122.1_Nkx3-2/Jaspar

Match Rank:9
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:AGCACTCG-
NCCACTTAN

PH0111.1_Nkx2-2/Jaspar

Match Rank:10
Score:0.63
Offset:-3
Orientation:forward strand
Alignment:---AGCACTCG------
ATAACCACTTGAAAATT