Information for 12-GCCATCTCTCCA (Motif 17)


Reverse Opposite:

p-value:1e-29
log p-value:-6.782e+01
Information Content per bp:1.699
Number of Target Sequences with motif193.0
Percentage of Target Sequences with motif7.06%
Number of Background Sequences with motif1267.4
Percentage of Background Sequences with motif2.80%
Average Position of motif in Targets96.5 +/- 107.5bp
Average Position of motif in Background94.9 +/- 56.5bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer

Match Rank:1
Score:0.66
Offset:0
Orientation:forward strand
Alignment:GCCATCTCTCCA
GCCATCTGTT--

MA0461.1_Atoh1/Jaspar

Match Rank:2
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:GCCATCTCTCCA
GCCATCTG----

MA0095.2_YY1/Jaspar

Match Rank:3
Score:0.59
Offset:-3
Orientation:reverse strand
Alignment:---GCCATCTCTCCA
GCNGCCATCTTG---

Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer

Match Rank:4
Score:0.59
Offset:3
Orientation:forward strand
Alignment:GCCATCTCTCCA-
---ATCACCCCAT

PB0193.1_Tcfe2a_2/Jaspar

Match Rank:5
Score:0.58
Offset:-4
Orientation:reverse strand
Alignment:----GCCATCTCTCCA-
CCNNACCATCTGGCCTN

MA0596.1_SREBF2/Jaspar

Match Rank:6
Score:0.58
Offset:3
Orientation:reverse strand
Alignment:GCCATCTCTCCA-
---ATCACCCCAT

Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer

Match Rank:7
Score:0.56
Offset:1
Orientation:forward strand
Alignment:GCCATCTCTCCA-
-CNGTCACGCCAC

YY1(Zf)/Promoter/Homer

Match Rank:8
Score:0.56
Offset:-3
Orientation:reverse strand
Alignment:---GCCATCTCTCCA
GCCGCCATCTTG---

MA0595.1_SREBF1/Jaspar

Match Rank:9
Score:0.56
Offset:3
Orientation:forward strand
Alignment:GCCATCTCTCCA-
---ATCACCCCAC

Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer

Match Rank:10
Score:0.55
Offset:0
Orientation:forward strand
Alignment:GCCATCTCTCCA
RCCATMTGTT--