Information for 1-AGTTCMAGGC (Motif 2)


Reverse Opposite:

p-value:1e-127
log p-value:-2.933e+02
Information Content per bp:1.678
Number of Target Sequences with motif934.0
Percentage of Target Sequences with motif34.16%
Number of Background Sequences with motif7015.2
Percentage of Background Sequences with motif15.48%
Average Position of motif in Targets78.5 +/- 59.7bp
Average Position of motif in Background94.9 +/- 60.4bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.44
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0505.1_Nr5a2/Jaspar

Match Rank:1
Score:0.70
Offset:-1
Orientation:forward strand
Alignment:-AGTTCMAGGC----
AAGTTCAAGGTCAGC

RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer

Match Rank:2
Score:0.67
Offset:0
Orientation:forward strand
Alignment:AGTTCMAGGC--
AGGTCAAGGTCA

TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer

Match Rank:3
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-AGTTCMAGGC
GCATTCCAGN-

PB0090.1_Zbtb12_1/Jaspar

Match Rank:4
Score:0.64
Offset:-4
Orientation:forward strand
Alignment:----AGTTCMAGGC---
CTAAGGTTCTAGATCAC

Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer

Match Rank:5
Score:0.62
Offset:0
Orientation:forward strand
Alignment:AGTTCMAGGC
ACATCAAAGG

TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer

Match Rank:6
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-AGTTCMAGGC
RCATTCCWGG-

TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer

Match Rank:7
Score:0.60
Offset:0
Orientation:forward strand
Alignment:AGTTCMAGGC
ACWTCAAAGG

Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer

Match Rank:8
Score:0.60
Offset:2
Orientation:forward strand
Alignment:AGTTCMAGGC--
--NTCAAGGTCA

MA0158.1_HOXA5/Jaspar

Match Rank:9
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:AGTTCMAGGC
AATTAGTG--

IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer

Match Rank:10
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-AGTTCMAGGC
TGGTTTCAGT-