Information for 14-GAGGACAATATA (Motif 21)


Reverse Opposite:

p-value:1e-25
log p-value:-5.914e+01
Information Content per bp:1.970
Number of Target Sequences with motif13.0
Percentage of Target Sequences with motif0.48%
Number of Background Sequences with motif1.5
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets76.5 +/- 20.5bp
Average Position of motif in Background40.8 +/- 31.6bp
Strand Bias (log2 ratio + to - strand density)3.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0072.1_Sox5_1/Jaspar

Match Rank:1
Score:0.68
Offset:-2
Orientation:forward strand
Alignment:--GAGGACAATATA--
TTTAGAACAATAAAAT

MA0078.1_Sox17/Jaspar

Match Rank:2
Score:0.68
Offset:3
Orientation:reverse strand
Alignment:GAGGACAATATA
---GACAATGNN

PB0063.1_Sox13_1/Jaspar

Match Rank:3
Score:0.68
Offset:-2
Orientation:forward strand
Alignment:--GAGGACAATATA--
TTAAGAACAATAAATT

PB0065.1_Sox15_1/Jaspar

Match Rank:4
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--GAGGACAATATA---
TAGTGAACAATAGATTT

PB0173.1_Sox21_2/Jaspar

Match Rank:5
Score:0.64
Offset:-3
Orientation:reverse strand
Alignment:---GAGGACAATATA--
NNNNNGAACAATTGANN

PB0074.1_Sox8_1/Jaspar

Match Rank:6
Score:0.64
Offset:-2
Orientation:reverse strand
Alignment:--GAGGACAATATA---
TNNAGAACAATANATNN

PB0183.1_Sry_2/Jaspar

Match Rank:7
Score:0.63
Offset:-3
Orientation:forward strand
Alignment:---GAGGACAATATA--
TCACGGAACAATAGGTG

MA0029.1_Mecom/Jaspar

Match Rank:8
Score:0.63
Offset:1
Orientation:forward strand
Alignment:GAGGACAATATA---
-AAGATAAGATAACA

PB0067.1_Sox18_1/Jaspar

Match Rank:9
Score:0.61
Offset:-3
Orientation:reverse strand
Alignment:---GAGGACAATATA-
NNTNANAACAATTNNA

PB0062.1_Sox12_1/Jaspar

Match Rank:10
Score:0.60
Offset:-3
Orientation:reverse strand
Alignment:---GAGGACAATATA
NTTNAGAACAATTA-