Information for 19-GAACGGTGCA (Motif 29)


Reverse Opposite:

p-value:1e-15
log p-value:-3.638e+01
Information Content per bp:1.530
Number of Target Sequences with motif10.0
Percentage of Target Sequences with motif0.37%
Number of Background Sequences with motif2.9
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets161.6 +/- 52.2bp
Average Position of motif in Background129.5 +/- 59.9bp
Strand Bias (log2 ratio + to - strand density)3.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0137.1_Irf3_2/Jaspar

Match Rank:1
Score:0.71
Offset:-3
Orientation:forward strand
Alignment:---GAACGGTGCA-
GGAGAAAGGTGCGA

PB0045.1_Myb_1/Jaspar

Match Rank:2
Score:0.58
Offset:-4
Orientation:reverse strand
Alignment:----GAACGGTGCA---
NNNNTAACGGTTNNNAN

POL013.1_MED-1/Jaspar

Match Rank:3
Score:0.57
Offset:3
Orientation:reverse strand
Alignment:GAACGGTGCA
---CGGAGC-

PB0046.1_Mybl1_1/Jaspar

Match Rank:4
Score:0.56
Offset:-4
Orientation:reverse strand
Alignment:----GAACGGTGCA---
NNANTAACGGTTNNNAN

BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer

Match Rank:5
Score:0.53
Offset:-1
Orientation:forward strand
Alignment:-GAACGGTGCA
NHAACBGYYV-

PB0104.1_Zscan4_1/Jaspar

Match Rank:6
Score:0.53
Offset:0
Orientation:forward strand
Alignment:GAACGGTGCA-------
TACATGTGCACATAAAA

PB0146.1_Mafk_2/Jaspar

Match Rank:7
Score:0.53
Offset:-2
Orientation:forward strand
Alignment:--GAACGGTGCA---
GAAAAAATTGCAAGG

MA0017.1_NR2F1/Jaspar

Match Rank:8
Score:0.52
Offset:-1
Orientation:forward strand
Alignment:-GAACGGTGCA---
TGACCTTTGAACCT

MA0019.1_Ddit3::Cebpa/Jaspar

Match Rank:9
Score:0.51
Offset:3
Orientation:forward strand
Alignment:GAACGGTGCA-----
---AGATGCAATCCC

CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer

Match Rank:10
Score:0.51
Offset:1
Orientation:forward strand
Alignment:GAACGGTGCA-
-NATGTTGCAA