Information for 24-CTCGAAAAACCA (Motif 30)


Reverse Opposite:

p-value:1e-15
log p-value:-3.541e+01
Information Content per bp:1.773
Number of Target Sequences with motif133.0
Percentage of Target Sequences with motif4.86%
Number of Background Sequences with motif1011.8
Percentage of Background Sequences with motif2.23%
Average Position of motif in Targets90.6 +/- 69.2bp
Average Position of motif in Background97.8 +/- 62.2bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0048.1_Hoxa13/Jaspar

Match Rank:1
Score:0.68
Offset:-4
Orientation:forward strand
Alignment:----CTCGAAAAACCA
AAACCTCGTAAAATTT

PH0068.1_Hoxc13/Jaspar

Match Rank:2
Score:0.68
Offset:-4
Orientation:forward strand
Alignment:----CTCGAAAAACCA
AAAGCTCGTAAAATTT

PB0192.1_Tcfap2e_2/Jaspar

Match Rank:3
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--CTCGAAAAACCA
TACTGGAAAAAAAA

MA0152.1_NFATC2/Jaspar

Match Rank:4
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:CTCGAAAAACCA
-TGGAAAA----

PH0077.1_Hoxd12/Jaspar

Match Rank:5
Score:0.59
Offset:-4
Orientation:forward strand
Alignment:----CTCGAAAAACCA-
CAAGGTCGTAAAATCTT

RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer

Match Rank:6
Score:0.59
Offset:6
Orientation:forward strand
Alignment:CTCGAAAAACCA----
------AAACCACANN

PH0076.1_Hoxd11/Jaspar

Match Rank:7
Score:0.58
Offset:-4
Orientation:forward strand
Alignment:----CTCGAAAAACCA-
TAAGGTCGTAAAATCCT

PB0182.1_Srf_2/Jaspar

Match Rank:8
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-CTCGAAAAACCA----
GTTAAAAAAAAAAATTA

PH0067.1_Hoxc12/Jaspar

Match Rank:9
Score:0.57
Offset:-4
Orientation:forward strand
Alignment:----CTCGAAAAACCA-
TTAGGTCGTAAAATTTC

NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma et al.)/Homer

Match Rank:10
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-CTCGAAAAACCA
AATGGAAAAT---