Information for 4-TTTTGAGACA (Motif 6)


Reverse Opposite:

p-value:1e-68
log p-value:-1.569e+02
Information Content per bp:1.675
Number of Target Sequences with motif447.0
Percentage of Target Sequences with motif16.35%
Number of Background Sequences with motif2990.3
Percentage of Background Sequences with motif6.60%
Average Position of motif in Targets81.7 +/- 76.1bp
Average Position of motif in Background92.8 +/- 64.3bp
Strand Bias (log2 ratio + to - strand density)-0.0
Multiplicity (# of sites on avg that occur together)1.02
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0099.2_JUN::FOS/Jaspar

Match Rank:1
Score:0.65
Offset:3
Orientation:reverse strand
Alignment:TTTTGAGACA
---TGAGTCA

PB0060.1_Smad3_1/Jaspar

Match Rank:2
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--TTTTGAGACA-----
CAAATCCAGACATCACA

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:3
Score:0.63
Offset:3
Orientation:reverse strand
Alignment:TTTTGAGACA-
---CCAGACAG

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:4
Score:0.62
Offset:3
Orientation:reverse strand
Alignment:TTTTGAGACA-
---BCAGACWA

MA0478.1_FOSL2/Jaspar

Match Rank:5
Score:0.58
Offset:2
Orientation:reverse strand
Alignment:TTTTGAGACA---
--NTGAGTCATCN

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:6
Score:0.58
Offset:3
Orientation:reverse strand
Alignment:TTTTGAGACA---
---CCAGACRSVB

BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer

Match Rank:7
Score:0.58
Offset:1
Orientation:forward strand
Alignment:TTTTGAGACA-
-DATGASTCAT

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:8
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--TTTTGAGACA
AGGTGHCAGACA

MA0513.1_SMAD2::SMAD3::SMAD4/Jaspar

Match Rank:9
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--TTTTGAGACA-
AGGTGNCAGACAG

MA0490.1_JUNB/Jaspar

Match Rank:10
Score:0.58
Offset:2
Orientation:reverse strand
Alignment:TTTTGAGACA---
--ATGAGTCATCN