Information for 6-GGAGGCAGAGGC (Motif 8)


Reverse Opposite:

p-value:1e-47
log p-value:-1.088e+02
Information Content per bp:1.707
Number of Target Sequences with motif390.0
Percentage of Target Sequences with motif14.26%
Number of Background Sequences with motif2917.3
Percentage of Background Sequences with motif6.44%
Average Position of motif in Targets84.6 +/- 78.4bp
Average Position of motif in Background95.9 +/- 58.4bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0504.1_NR2C2/Jaspar

Match Rank:1
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-GGAGGCAGAGGC--
AGGGGTCAGAGGTCA

ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer

Match Rank:2
Score:0.56
Offset:8
Orientation:forward strand
Alignment:GGAGGCAGAGGC----
--------AGGCCTNG

ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer

Match Rank:3
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-GGAGGCAGAGGC
AGGAAACAGCTG-

PB0190.1_Tcfap2b_2/Jaspar

Match Rank:4
Score:0.55
Offset:0
Orientation:forward strand
Alignment:GGAGGCAGAGGC---
ATTGCCTCAGGCAAT

MA0146.2_Zfx/Jaspar

Match Rank:5
Score:0.55
Offset:1
Orientation:reverse strand
Alignment:GGAGGCAGAGGC---
-CAGGCCNNGGCCNN

RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer

Match Rank:6
Score:0.54
Offset:0
Orientation:forward strand
Alignment:GGAGGCAGAGGC--
TAGGGCAAAGGTCA

PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer

Match Rank:7
Score:0.54
Offset:0
Orientation:reverse strand
Alignment:GGAGGCAGAGGC--
TGGGGCAAAGGTCA

MA0065.2_PPARG::RXRA/Jaspar

Match Rank:8
Score:0.53
Offset:-1
Orientation:forward strand
Alignment:-GGAGGCAGAGGC--
GTAGGGCAAAGGTCA

PB0088.1_Tcfap2e_1/Jaspar

Match Rank:9
Score:0.52
Offset:0
Orientation:forward strand
Alignment:GGAGGCAGAGGC---
ATTGCCTGAGGCAAT

MA0514.1_Sox3/Jaspar

Match Rank:10
Score:0.52
Offset:1
Orientation:reverse strand
Alignment:GGAGGCAGAGGC
-AAAACAAAGG-