Information for 7-RCTCATAACY (Motif 9)


Reverse Opposite:

p-value:1e-46
log p-value:-1.065e+02
Information Content per bp:1.634
Number of Target Sequences with motif341.0
Percentage of Target Sequences with motif12.47%
Number of Background Sequences with motif2403.9
Percentage of Background Sequences with motif5.31%
Average Position of motif in Targets104.9 +/- 96.5bp
Average Position of motif in Background97.0 +/- 59.4bp
Strand Bias (log2 ratio + to - strand density)-0.0
Multiplicity (# of sites on avg that occur together)1.24
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0068.1_Hoxc13/Jaspar

Match Rank:1
Score:0.67
Offset:-3
Orientation:forward strand
Alignment:---RCTCATAACY---
AAAGCTCGTAAAATTT

PH0048.1_Hoxa13/Jaspar

Match Rank:2
Score:0.65
Offset:-3
Orientation:forward strand
Alignment:---RCTCATAACY---
AAACCTCGTAAAATTT

MA0462.1_BATF::JUN/Jaspar

Match Rank:3
Score:0.64
Offset:-2
Orientation:reverse strand
Alignment:--RCTCATAACY
TGAGTCATTTC-

MA0089.1_NFE2L1::MafG/Jaspar

Match Rank:4
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:RCTCATAACY
-GTCATN---

PH0065.1_Hoxc10/Jaspar

Match Rank:5
Score:0.62
Offset:-3
Orientation:forward strand
Alignment:---RCTCATAACY---
TAAAGTCGTAAAACGT

PB0021.1_Gata3_1/Jaspar

Match Rank:6
Score:0.61
Offset:-5
Orientation:reverse strand
Alignment:-----RCTCATAACY-------
NNTNANTTCTTATCTCTANANN

PH0047.1_Hoxa11/Jaspar

Match Rank:7
Score:0.60
Offset:-3
Orientation:forward strand
Alignment:---RCTCATAACY---
TAAAGTCGTAAAACAT

PH0066.1_Hoxc11/Jaspar

Match Rank:8
Score:0.59
Offset:-3
Orientation:forward strand
Alignment:---RCTCATAACY---
TAAAGTCGTAAAATAG

PH0077.1_Hoxd12/Jaspar

Match Rank:9
Score:0.59
Offset:-3
Orientation:forward strand
Alignment:---RCTCATAACY----
CAAGGTCGTAAAATCTT

PB0178.1_Sox8_2/Jaspar

Match Rank:10
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--RCTCATAACY--
ACATTCATGACACG