# executives
GENOME_PATH="/wgbs/resource/Bismark_bowtie2_index_mm10"
LAMBDA_PATH='/wgbs/resource/Lambda'
G_size='/wgbs/resource/mm10.chrom.sizes'
BISMARK_PATH='/wgbs/resource/Bismark-0.19.0'
PRESEQ_PATH='/usr/local/bin'
Rscript='/wgbs/resource/IHEC_WGBS'
PhiX_PATH='/wgbs/resource/PhiX174/bwa_index/phiX174.fa'
find_id='/wgbs/resource/find_image_ID_digest.sh'
cutadapt='/usr/local/bin/cutadapt'
bismark=${BISMARK_PATH}/bismark
deduplicate_bismark=${BISMARK_PATH}/deduplicate_bismark
bismark_methylation_extractor=${BISMARK_PATH}/bismark_methylation_extractor